Wall clock time and date at job start Sat Apr 11 2020 00:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34771 * 120.00409 * 2 1 4 4 O 1.21618 * 120.00215 * 181.64761 * 3 2 1 5 5 C 1.47427 * 119.99987 * 1.65180 * 3 2 1 6 6 C 1.39675 * 120.21256 * 25.62420 * 5 3 2 7 7 C 1.37815 * 119.93274 * 179.76804 * 6 5 3 8 8 C 1.38654 * 120.38467 * 0.48439 * 7 6 5 9 9 C 1.37915 * 120.43815 * 359.77398 * 8 7 6 10 10 C 1.39110 * 120.04550 * 359.97438 * 9 8 7 11 11 S 1.76204 * 120.18371 * 179.97438 * 10 9 8 12 12 C 1.76195 * 100.00326 * 352.80300 * 11 10 9 13 13 H 1.08007 * 119.99823 * 4.66484 * 12 11 10 14 14 C 1.38803 * 120.00062 * 184.66553 * 12 11 10 15 15 N 1.31555 * 120.00085 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00024 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47101 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47501 * 119.99722 * 16 14 12 19 19 H 1.48504 * 109.47148 * 240.00296 * 16 14 12 20 20 C 1.46508 * 119.99667 * 179.97438 * 2 1 3 21 21 H 1.09004 * 110.43318 * 177.45933 * 20 2 1 22 22 C 1.55239 * 110.58183 * 54.87546 * 20 2 1 23 23 C 1.54883 * 102.59027 * 203.33970 * 22 20 2 24 24 C 1.54268 * 104.31347 * 37.93007 * 23 22 20 25 25 C 1.53876 * 106.59757 * 336.32436 * 24 23 22 26 26 H 1.09009 * 110.02974 * 119.28075 * 25 24 23 27 27 O 1.42900 * 110.03387 * 240.71257 * 25 24 23 28 28 H 1.08997 * 109.47425 * 263.98804 * 1 2 3 29 29 H 1.09003 * 109.46718 * 23.98112 * 1 2 3 30 30 H 1.09000 * 109.47180 * 143.97851 * 1 2 3 31 31 H 1.07993 * 120.03510 * 359.97438 * 6 5 3 32 32 H 1.08004 * 119.80337 * 180.23297 * 7 6 5 33 33 H 1.08006 * 119.78045 * 179.73849 * 8 7 6 34 34 H 1.07996 * 119.97306 * 179.97438 * 9 8 7 35 35 H 0.96998 * 119.99663 * 179.97438 * 15 14 12 36 36 H 1.09005 * 110.89668 * 85.04264 * 22 20 2 37 37 H 1.09005 * 110.76105 * 321.57262 * 22 20 2 38 38 H 1.09005 * 110.48212 * 279.18845 * 23 22 20 39 39 H 1.08996 * 110.48524 * 156.67799 * 23 22 20 40 40 H 1.09002 * 110.03324 * 95.60934 * 24 23 22 41 41 H 1.09000 * 110.03443 * 216.98984 * 24 23 22 42 42 H 0.96699 * 114.00263 * 298.54935 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3547 1.1673 -0.0303 5 6 1.4024 2.4436 0.0368 6 6 0.1219 2.5005 0.5918 7 6 -0.5596 3.6979 0.6275 8 6 0.0144 4.8473 0.1061 9 6 1.2756 4.8079 -0.4504 10 6 1.9818 3.6100 -0.4912 11 16 3.5932 3.5553 -1.2020 12 6 3.6907 5.1849 -1.8649 13 1 2.8937 5.8906 -1.6827 14 6 4.7918 5.5616 -2.6214 15 7 5.7628 4.7022 -2.8430 16 14 4.8955 7.2895 -3.3237 17 1 3.6851 8.0561 -2.9331 18 1 6.1047 7.9682 -2.7922 19 1 4.9788 7.2177 -4.8046 20 6 2.1975 -1.2688 0.0006 21 1 3.2715 -1.0883 -0.0448 22 6 1.7461 -2.1600 -1.1877 23 6 2.1165 -3.5833 -0.7019 24 6 1.7901 -3.5687 0.8057 25 6 1.8416 -2.0971 1.2524 26 1 0.8699 -1.7902 1.6394 27 8 2.8451 -1.9247 2.2550 28 1 -0.3634 -0.1076 1.0220 29 1 -0.3633 0.9390 -0.4177 30 1 -0.3633 -0.8312 -0.6044 31 1 -0.3324 1.6078 0.9955 32 1 -1.5481 3.7402 1.0606 33 1 -0.5301 5.7796 0.1354 34 1 1.7153 5.7076 -0.8547 35 1 6.5321 4.9654 -3.3720 36 1 2.2952 -1.9062 -2.0945 37 1 0.6715 -2.0742 -1.3487 38 1 3.1775 -3.7765 -0.8608 39 1 1.5124 -4.3310 -1.2158 40 1 0.7935 -3.9760 0.9760 41 1 2.5301 -4.1521 1.3537 42 1 2.6892 -2.4373 3.0599 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708583001.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:35 Heat of formation + Delta-G solvation = -35.273162 kcal Electronic energy + Delta-G solvation = -24971.588408 eV Core-core repulsion = 21429.602853 eV Total energy + Delta-G solvation = -3541.985554 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.22879 -38.59786 -37.23362 -35.49323 -34.33804 -32.74075 -30.86279 -30.29026 -28.13257 -27.60512 -26.65848 -25.79190 -23.10685 -21.99682 -20.93846 -20.54153 -19.29233 -17.87467 -17.37285 -16.62173 -16.47899 -16.15576 -15.46073 -15.10757 -14.93938 -14.70287 -14.07273 -14.02834 -13.60319 -13.26827 -13.06364 -12.95459 -12.75864 -12.60752 -12.46932 -12.19123 -11.77141 -11.60963 -11.56630 -11.33066 -11.20340 -10.96768 -10.88146 -10.72332 -10.59939 -10.24398 -10.03328 -9.74512 -9.54751 -9.42782 -8.70915 -8.42422 -8.26246 -8.13178 -6.52241 -6.44983 -4.15654 1.58521 2.02090 3.11336 3.12850 3.21026 3.21630 3.42525 3.47073 4.05822 4.06723 4.39782 4.48293 4.60309 4.79073 4.96318 5.01364 5.05734 5.18743 5.22806 5.26712 5.34201 5.38337 5.44657 5.51497 5.52541 5.62008 5.68666 5.77764 5.81851 5.88016 5.99284 6.05040 6.13856 6.24979 6.40074 6.59598 6.79478 6.89324 7.03787 7.15198 7.46677 7.60371 7.61159 7.76012 8.18151 8.76489 9.01389 10.59266 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.016212 B = 0.003892 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.649177 B = 7192.256890 C = 8344.683337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.612 5.612 3 C 0.560 3.440 4 O -0.506 6.506 5 C -0.172 4.172 6 C -0.082 4.082 7 C -0.188 4.188 8 C -0.077 4.077 9 C -0.155 4.155 10 C -0.050 4.050 11 S 0.154 5.846 12 C -0.586 4.586 13 H 0.093 0.907 14 C 0.082 3.918 15 N -0.858 5.858 16 Si 0.921 3.079 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.277 1.277 20 C 0.145 3.855 21 H 0.118 0.882 22 C -0.134 4.134 23 C -0.120 4.120 24 C -0.155 4.155 25 C 0.088 3.912 26 H 0.060 0.940 27 O -0.556 6.556 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.132 0.868 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.139 0.861 35 H 0.274 0.726 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.325 -13.713 6.162 20.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.346 5.346 3 C 0.351 3.649 4 O -0.381 6.381 5 C -0.186 4.186 6 C -0.102 4.102 7 C -0.213 4.213 8 C -0.099 4.099 9 C -0.180 4.180 10 C -0.170 4.170 11 S 0.417 5.583 12 C -0.732 4.732 13 H 0.110 0.890 14 C -0.129 4.129 15 N -0.491 5.491 16 Si 0.746 3.254 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.202 1.202 20 C 0.041 3.959 21 H 0.136 0.864 22 C -0.172 4.172 23 C -0.158 4.158 24 C -0.193 4.193 25 C 0.028 3.972 26 H 0.078 0.922 27 O -0.361 6.361 28 H 0.071 0.929 29 H 0.117 0.883 30 H 0.082 0.918 31 H 0.150 0.850 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.156 0.844 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -11.003 -14.167 5.373 18.725 hybrid contribution -1.341 1.640 0.117 2.121 sum -12.344 -12.527 5.490 18.424 Atomic orbital electron populations 1.22451 0.80771 1.04265 1.00786 1.47562 1.06222 1.05203 1.75612 1.18383 0.87237 0.83251 0.76034 1.90801 1.13149 1.86249 1.47924 1.19091 0.96143 0.92271 1.11110 1.21667 0.93068 0.98154 0.97273 1.20677 1.00559 0.93091 1.06941 1.21096 0.94913 0.97595 0.96260 1.21420 0.95327 0.98130 1.03143 1.23009 1.02087 0.94021 0.97872 1.84541 1.03623 1.15401 1.54752 1.23922 1.09850 1.00679 1.38780 0.88964 1.25103 0.94323 0.98910 0.94564 1.69991 1.08127 1.34940 1.36051 0.86070 0.78650 0.81887 0.78747 1.19149 1.20219 1.20249 1.21822 0.99731 0.82445 0.91874 0.86432 1.22888 1.01907 0.94226 0.98208 1.22236 1.01978 0.96725 0.94815 1.22863 1.02010 0.96854 0.97602 1.22857 0.91117 0.93831 0.89412 0.92205 1.86675 1.49425 1.71654 1.28312 0.92916 0.88340 0.91802 0.85022 0.87058 0.87058 0.84389 0.91606 0.90226 0.90658 0.91012 0.91300 0.91347 0.90730 0.78117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.67 7.80 59.85 0.47 1.14 16 2 N -0.61 -9.57 2.86 -173.08 -0.50 -10.07 16 3 C 0.56 11.58 7.33 -12.52 -0.09 11.48 16 4 O -0.51 -12.53 13.78 5.26 0.07 -12.46 16 5 C -0.17 -3.51 5.55 -104.75 -0.58 -4.09 16 6 C -0.08 -1.33 7.49 -39.20 -0.29 -1.62 16 7 C -0.19 -2.90 10.02 -39.58 -0.40 -3.30 16 8 C -0.08 -1.32 10.03 -39.55 -0.40 -1.72 16 9 C -0.15 -3.28 9.25 -39.38 -0.36 -3.65 16 10 C -0.05 -1.18 6.14 -38.39 -0.24 -1.42 16 11 S 0.15 4.22 18.92 -107.50 -2.03 2.18 16 12 C -0.59 -16.36 9.08 30.94 0.28 -16.08 16 13 H 0.09 2.44 4.84 -52.48 -0.25 2.19 16 14 C 0.08 2.27 5.49 -17.46 -0.10 2.17 16 15 N -0.86 -25.05 13.22 55.49 0.73 -24.31 16 16 Si 0.92 20.87 29.55 -169.99 -5.02 15.84 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 20 C 0.15 2.07 3.00 -66.08 -0.20 1.88 16 21 H 0.12 2.12 6.91 -51.93 -0.36 1.76 16 22 C -0.13 -1.48 6.46 -24.55 -0.16 -1.64 16 23 C -0.12 -1.07 6.82 -25.07 -0.17 -1.24 16 24 C -0.16 -1.31 6.60 -25.61 -0.17 -1.48 16 25 C 0.09 1.00 3.89 -25.61 -0.10 0.90 16 26 H 0.06 0.62 6.84 -51.92 -0.36 0.26 16 27 O -0.56 -7.18 13.22 -35.23 -0.47 -7.64 16 28 H 0.05 0.50 6.83 -51.93 -0.35 0.14 16 29 H 0.10 1.19 4.80 -51.93 -0.25 0.94 16 30 H 0.06 0.57 6.06 -51.93 -0.31 0.26 16 31 H 0.13 1.68 4.40 -52.49 -0.23 1.44 16 32 H 0.11 1.35 8.06 -52.48 -0.42 0.92 16 33 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 34 H 0.14 3.05 4.96 -52.49 -0.26 2.79 16 35 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.72 6.07 -51.93 -0.32 0.41 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.59 7.96 -51.93 -0.41 0.18 16 42 H 0.37 2.90 9.10 45.56 0.41 3.32 16 LS Contribution 343.59 15.07 5.18 5.18 Total: -1.00 -34.32 343.59 -8.90 -43.23 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -4.36 Total: 6.70 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -2.50 Total: -18.66 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.24 Total: -34.38 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.39 Total: -20.10 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 4.22 SS G_CDS: -2.03 Total: 2.18 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.32 -8.90 -43.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708583001.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.954 kcal (2) G-P(sol) polarization free energy of solvation -34.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds