Wall clock time and date at job start Sat Apr 11 2020 00:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 120.00275 * 2 1 4 4 C 1.52997 * 109.46743 * 269.99882 * 3 2 1 5 5 H 1.08996 * 110.83961 * 302.80654 * 4 3 2 6 6 C 1.54818 * 110.90410 * 179.15397 * 4 3 2 7 7 C 1.54096 * 104.18841 * 220.92373 * 6 4 3 8 8 O 1.43742 * 107.29548 * 357.97051 * 7 6 4 9 9 C 1.44386 * 106.97477 * 26.51811 * 8 7 6 10 10 C 1.34777 * 119.99897 * 180.02562 * 2 1 3 11 11 O 1.21613 * 120.00349 * 175.78564 * 10 2 1 12 12 C 1.47425 * 120.00029 * 355.77865 * 10 2 1 13 13 C 1.39683 * 120.21109 * 48.55494 * 12 10 2 14 14 C 1.37808 * 119.93458 * 179.97438 * 13 12 10 15 15 C 1.38661 * 120.38616 * 359.97438 * 14 13 12 16 16 C 1.37914 * 120.43336 * 0.02562 * 15 14 13 17 17 C 1.39109 * 120.05397 * 359.74628 * 16 15 14 18 18 S 1.76198 * 120.19018 * 180.25643 * 17 16 15 19 19 C 1.76190 * 99.99951 * 351.82131 * 18 17 16 20 20 H 1.08002 * 120.00501 * 4.18842 * 19 18 17 21 21 C 1.38808 * 119.99915 * 184.18420 * 19 18 17 22 22 N 1.31559 * 120.00254 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00109 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47385 * 89.99806 * 23 21 19 25 25 H 1.48505 * 109.47442 * 210.00121 * 23 21 19 26 26 H 1.48507 * 109.46971 * 329.99645 * 23 21 19 27 27 H 1.08997 * 109.47510 * 94.71915 * 1 2 3 28 28 H 1.08995 * 109.47414 * 214.72546 * 1 2 3 29 29 H 1.09004 * 109.46686 * 334.71900 * 1 2 3 30 30 H 1.09003 * 109.47045 * 150.00081 * 3 2 1 31 31 H 1.08992 * 109.46727 * 30.00152 * 3 2 1 32 32 H 1.09003 * 110.48653 * 339.60279 * 6 4 3 33 33 H 1.09000 * 110.48352 * 102.24553 * 6 4 3 34 34 H 1.09003 * 109.87657 * 117.39612 * 7 6 4 35 35 H 1.09000 * 109.87858 * 238.39740 * 7 6 4 36 36 H 1.08997 * 110.61837 * 201.43923 * 9 8 7 37 37 H 1.08997 * 110.61723 * 78.43313 * 9 8 7 38 38 H 1.07993 * 120.03631 * 0.02562 * 13 12 10 39 39 H 1.08002 * 119.80617 * 179.97438 * 14 13 12 40 40 H 1.07995 * 119.78002 * 179.97438 * 15 14 13 41 41 H 1.08001 * 119.96623 * 180.02562 * 16 15 14 42 42 H 0.96994 * 119.99954 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 1 2.9984 0.9435 -1.9920 6 6 3.2079 3.0612 -1.4814 7 6 2.5290 3.8408 -2.6241 8 8 1.5295 2.9793 -3.1943 9 6 1.1225 2.0615 -2.1567 10 6 2.1388 -1.1672 -0.0005 11 8 3.3525 -1.1687 -0.0779 12 6 1.4047 -2.4423 0.0929 13 6 0.3060 -2.6830 -0.7354 14 6 -0.3758 -3.8771 -0.6436 15 6 0.0224 -4.8440 0.2670 16 6 1.1050 -4.6226 1.0923 17 6 1.8092 -3.4257 1.0117 18 16 3.1969 -3.1419 2.0597 19 6 3.0701 -4.5423 3.1213 20 1 2.3129 -5.2908 2.9399 21 6 3.9434 -4.6837 4.1909 22 7 3.8491 -5.7296 4.9834 23 14 5.2527 -3.3890 4.5053 24 1 4.7085 -2.3439 5.4090 25 1 6.4355 -4.0248 5.1394 26 1 5.6551 -2.7691 3.2172 27 1 -0.3634 -0.0845 -1.0241 28 1 -0.3634 -0.8446 0.5854 29 1 -0.3633 0.9293 0.4389 30 1 3.1500 1.1383 0.5138 31 1 1.6085 2.0283 0.5138 32 1 3.0910 3.5909 -0.5360 33 1 4.2633 2.9018 -1.7025 34 1 2.0601 4.7425 -2.2302 35 1 3.2671 4.1072 -3.3806 36 1 0.6719 1.1683 -2.5895 37 1 0.4318 2.5450 -1.4659 38 1 -0.0084 -1.9345 -1.4476 39 1 -1.2253 -4.0609 -1.2848 40 1 -0.5192 -5.7761 0.3310 41 1 1.4088 -5.3811 1.7986 42 1 4.4591 -5.8282 5.7310 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749433329.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:05 Heat of formation + Delta-G solvation = -69.530086 kcal Electronic energy + Delta-G solvation = -24776.612303 eV Core-core repulsion = 21233.141257 eV Total energy + Delta-G solvation = -3543.471046 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.43207 -40.23935 -39.03922 -36.77568 -34.86613 -33.89207 -32.08032 -31.91748 -30.27101 -28.28494 -28.02098 -26.77003 -24.21847 -23.60334 -23.34023 -21.77421 -20.89617 -19.69714 -18.31314 -17.78870 -17.74458 -17.28343 -17.15523 -16.87059 -16.24580 -16.02104 -15.85396 -15.33941 -15.01293 -14.94426 -14.65159 -14.43598 -13.96781 -13.89468 -13.74079 -13.67978 -13.31721 -13.14159 -13.02356 -12.85373 -12.73025 -12.58527 -12.31534 -12.25370 -11.90846 -11.54212 -11.51013 -11.38968 -11.18051 -10.62089 -10.60252 -10.50166 -9.83885 -9.65961 -8.73146 -8.62862 -6.36309 0.07591 0.44662 0.96547 1.19683 1.36588 1.56844 1.71299 2.03567 2.11593 2.55058 2.72533 2.86984 3.01436 3.57315 3.61846 3.80698 3.94873 3.97141 4.18038 4.21037 4.24756 4.31865 4.39558 4.52479 4.54952 4.59798 4.71429 4.74154 4.78191 4.81060 4.87087 4.92149 4.97288 5.06508 5.07490 5.19227 5.37210 5.44664 5.59288 5.61523 5.63970 5.92266 6.02694 6.14171 6.32004 6.79497 7.15959 8.48212 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.014937 B = 0.004032 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.124678 B = 6943.453917 C = 8505.856634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.607 5.607 3 C 0.128 3.872 4 C -0.134 4.134 5 H 0.057 0.943 6 C -0.147 4.147 7 C 0.045 3.955 8 O -0.405 6.405 9 C 0.058 3.942 10 C 0.559 3.441 11 O -0.564 6.564 12 C -0.159 4.159 13 C -0.062 4.062 14 C -0.139 4.139 15 C -0.077 4.077 16 C -0.164 4.164 17 C -0.051 4.051 18 S -0.042 6.042 19 C -0.562 4.562 20 H 0.086 0.914 21 C 0.055 3.945 22 N -0.904 5.904 23 Si 0.905 3.095 24 H -0.255 1.255 25 H -0.252 1.252 26 H -0.244 1.244 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.162 0.838 39 H 0.169 0.831 40 H 0.148 0.852 41 H 0.113 0.887 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.172 17.606 -13.343 24.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.339 5.339 3 C 0.006 3.994 4 C -0.154 4.154 5 H 0.075 0.925 6 C -0.185 4.185 7 C -0.031 4.031 8 O -0.325 6.325 9 C -0.018 4.018 10 C 0.348 3.652 11 O -0.444 6.444 12 C -0.171 4.171 13 C -0.081 4.081 14 C -0.161 4.161 15 C -0.097 4.097 16 C -0.189 4.189 17 C -0.167 4.167 18 S 0.211 5.789 19 C -0.708 4.708 20 H 0.103 0.897 21 C -0.152 4.152 22 N -0.540 5.540 23 Si 0.727 3.273 24 H -0.179 1.179 25 H -0.176 1.176 26 H -0.168 1.168 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.119 0.881 30 H 0.079 0.921 31 H 0.133 0.867 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.179 0.821 39 H 0.187 0.813 40 H 0.165 0.835 41 H 0.131 0.869 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.534 18.420 -13.217 24.594 hybrid contribution 0.307 -1.439 0.987 1.772 sum -9.227 16.981 -12.230 22.870 Atomic orbital electron populations 1.22319 0.76989 1.04818 1.03465 1.47779 1.08515 1.04660 1.72907 1.21536 0.97794 0.84533 0.95584 1.23027 0.97711 0.97806 0.96867 0.92454 1.22939 1.00455 0.94515 1.00567 1.23274 0.90618 0.93414 0.95785 1.88839 1.58170 1.48742 1.36727 1.23715 0.95241 0.93055 0.89767 1.18469 0.86604 0.84672 0.75457 1.90771 1.15497 1.87705 1.50381 1.19506 1.00660 0.94312 1.02583 1.21504 0.91522 0.98573 0.96528 1.21391 1.01867 0.92912 0.99930 1.21513 0.94279 1.00304 0.93644 1.21450 0.98526 0.96636 1.02301 1.22263 0.98477 0.96807 0.99118 1.83393 1.30950 1.32648 1.31941 1.23124 1.22764 1.09689 1.15255 0.89670 1.25540 0.98401 0.97259 0.93988 1.69959 1.38443 1.29105 1.16534 0.86039 0.80081 0.80106 0.81102 1.17882 1.17592 1.16812 0.89937 0.91342 0.88091 0.92117 0.86703 0.88455 0.90772 0.90537 0.89571 0.89032 0.89676 0.82097 0.81312 0.83474 0.86906 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 8.26 127.77 1.06 2.07 16 2 N -0.61 -15.05 2.79 -850.67 -2.37 -17.43 16 3 C 0.13 2.70 4.81 86.38 0.42 3.11 16 4 C -0.13 -2.63 3.38 -9.49 -0.03 -2.66 16 5 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 6 C -0.15 -2.25 6.60 31.59 0.21 -2.04 16 7 C 0.05 0.67 7.70 72.35 0.56 1.23 16 8 O -0.41 -8.15 11.52 -148.98 -1.72 -9.86 16 9 C 0.06 0.94 6.15 72.67 0.45 1.38 16 10 C 0.56 20.17 6.72 86.66 0.58 20.75 16 11 O -0.56 -25.44 15.29 -4.07 -0.06 -25.50 16 12 C -0.16 -5.74 4.92 -19.95 -0.10 -5.84 16 13 C -0.06 -1.57 7.77 22.52 0.17 -1.39 16 14 C -0.14 -3.24 10.02 22.27 0.22 -3.01 16 15 C -0.08 -2.31 10.03 22.29 0.22 -2.09 16 16 C -0.16 -6.88 9.24 22.40 0.21 -6.67 16 17 C -0.05 -2.28 6.13 23.04 0.14 -2.13 16 18 S -0.04 -2.24 17.65 -56.49 -1.00 -3.23 16 19 C -0.56 -33.26 9.62 67.96 0.65 -32.61 16 20 H 0.09 5.29 5.09 -2.91 -0.01 5.27 16 21 C 0.06 3.23 5.50 84.87 0.47 3.70 16 22 N -0.90 -54.66 13.96 21.65 0.30 -54.36 16 23 Si 0.91 44.59 27.74 68.60 1.90 46.49 16 24 H -0.25 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.25 -11.56 7.11 99.48 0.71 -10.85 16 26 H -0.24 -12.24 6.74 99.48 0.67 -11.57 16 27 H 0.08 0.85 6.47 -2.39 -0.02 0.84 16 28 H 0.07 1.28 6.25 -2.39 -0.01 1.26 16 29 H 0.10 0.96 7.84 -2.38 -0.02 0.95 16 30 H 0.06 1.66 7.48 -2.39 -0.02 1.64 16 31 H 0.11 1.56 7.82 -2.39 -0.02 1.55 16 32 H 0.10 1.13 7.86 -2.39 -0.02 1.11 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.09 1.43 7.63 -2.39 -0.02 1.41 16 37 H 0.09 0.95 8.02 -2.39 -0.02 0.93 16 38 H 0.16 2.76 6.28 -2.91 -0.02 2.75 16 39 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 40 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 41 H 0.11 5.44 4.99 -2.91 -0.01 5.43 16 42 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -78.68 349.48 3.28 -75.40 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 1.00 Total: 14.72 kcal Atomic # 6 Polarization: -31.45 SS G_CDS: 5.23 Total: -26.22 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -2.07 Total: -71.79 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -1.78 Total: -35.36 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.90 Total: 46.49 kcal Atomic # 16 Polarization: -2.24 SS G_CDS: -1.00 Total: -3.23 kcal Total: -78.68 3.28 -75.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749433329.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.873 kcal (2) G-P(sol) polarization free energy of solvation -78.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds