Wall clock time and date at job start Sat Apr 11 2020 00:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 110.38742 * 2 1 4 4 C 1.53711 * 110.33991 * 122.22866 * 2 1 3 5 5 C 1.52977 * 112.51472 * 116.08066 * 4 2 1 6 6 H 1.08998 * 109.58210 * 270.12095 * 5 4 2 7 7 N 1.46506 * 109.64541 * 149.97171 * 5 4 2 8 8 C 1.34775 * 120.00439 * 154.00600 * 7 5 4 9 9 O 1.21285 * 119.99302 * 0.02562 * 8 7 5 10 10 C 1.50695 * 120.00509 * 180.02562 * 8 7 5 11 11 C 1.50696 * 109.47224 * 180.02562 * 10 8 7 12 12 C 1.38304 * 119.93020 * 269.72750 * 11 10 8 13 13 C 1.38101 * 120.06831 * 179.72920 * 12 11 10 14 14 C 1.38883 * 119.92970 * 0.51541 * 13 12 11 15 15 O 1.35747 * 120.06995 * 179.72804 * 14 13 12 16 16 C 1.34828 * 117.00313 * 174.49370 * 15 14 13 17 17 H 1.07998 * 119.99851 * 5.06312 * 16 15 14 18 18 C 1.38647 * 120.00235 * 185.06076 * 16 15 14 19 19 N 1.31556 * 120.00189 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 120.00062 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46982 * 59.99841 * 20 18 16 22 22 H 1.48497 * 109.46818 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46856 * 299.99917 * 20 18 16 24 24 C 1.38874 * 119.86097 * 359.76006 * 14 13 12 25 25 C 1.38099 * 119.93491 * 359.97438 * 24 14 13 26 26 C 1.55151 * 108.94366 * 30.03129 * 5 4 2 27 27 S 1.83395 * 110.33899 * 237.76888 * 2 1 3 28 28 H 1.08994 * 109.47148 * 180.77078 * 1 2 3 29 29 H 1.08998 * 109.47055 * 300.77293 * 1 2 3 30 30 H 1.09001 * 109.46720 * 60.77545 * 1 2 3 31 31 H 1.08999 * 108.88588 * 236.84506 * 4 2 1 32 32 H 1.08995 * 108.88574 * 355.39513 * 4 2 1 33 33 H 0.97006 * 119.99855 * 334.00790 * 7 5 4 34 34 H 1.08997 * 109.47129 * 300.00097 * 10 8 7 35 35 H 1.09003 * 109.47048 * 60.00311 * 10 8 7 36 36 H 1.07997 * 119.96711 * 359.97438 * 12 11 10 37 37 H 1.07996 * 120.03892 * 180.27740 * 13 12 11 38 38 H 0.97002 * 120.00435 * 179.97438 * 19 18 16 39 39 H 1.08002 * 120.03414 * 180.02562 * 24 14 13 40 40 H 1.07995 * 119.96911 * 179.97438 * 25 24 14 41 41 H 1.08999 * 111.13156 * 200.68729 * 26 5 4 42 42 H 1.09006 * 111.13329 * 76.54743 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0643 -0.7686 1.2192 5 6 2.8505 -2.0201 0.8242 6 1 2.1730 -2.8714 0.7583 7 7 3.8801 -2.2928 1.8302 8 6 4.3318 -3.5500 2.0085 9 8 3.8862 -4.4555 1.3358 10 6 5.3905 -3.8307 3.0436 11 6 5.7174 -5.3018 3.0417 12 6 5.0182 -6.1650 3.8656 13 6 5.3115 -7.5145 3.8621 14 6 6.3172 -8.0029 3.0380 15 8 6.6117 -9.3280 3.0364 16 6 7.5177 -9.7527 2.1327 17 1 8.0333 -9.0382 1.5083 18 6 7.7875 -11.1067 2.0051 19 7 7.1598 -11.9771 2.7661 20 14 9.0433 -11.6949 0.7534 21 1 10.3659 -11.0928 1.0588 22 1 9.1476 -13.1750 0.8151 23 1 8.6149 -11.2846 -0.6080 24 6 7.0213 -7.1326 2.2162 25 6 6.7195 -5.7850 2.2202 26 6 3.5204 -1.7798 -0.5544 27 16 2.1675 -0.9171 -1.4546 28 1 -0.3633 -1.0275 0.0138 29 1 -0.3633 0.5258 0.8830 30 1 -0.3633 0.5018 -0.8969 31 1 2.7158 -0.1101 1.7937 32 1 1.2231 -1.0656 1.8454 33 1 4.2367 -1.5685 2.3679 34 1 6.2884 -3.2591 2.8091 35 1 5.0221 -3.5412 4.0278 36 1 4.2392 -5.7840 4.5093 37 1 4.7622 -8.1889 4.5023 38 1 7.3483 -12.9244 2.6766 39 1 7.8036 -7.5094 1.5740 40 1 7.2670 -5.1077 1.5816 41 1 3.7747 -2.7233 -1.0374 42 1 4.3985 -1.1410 -0.4586 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839828560.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:49 Heat of formation + Delta-G solvation = -69.463494 kcal Electronic energy + Delta-G solvation = -23582.166775 eV Core-core repulsion = 20038.698617 eV Total energy + Delta-G solvation = -3543.468158 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.16520 -40.48472 -38.45246 -37.66257 -34.76034 -34.39608 -32.99355 -31.78086 -31.41603 -28.20337 -27.70047 -26.98209 -24.34074 -23.63063 -22.56388 -21.52451 -21.25929 -19.84163 -18.86500 -18.20011 -18.02225 -16.77541 -16.59903 -16.36587 -16.08681 -15.98566 -15.52905 -15.50568 -15.30682 -15.01352 -14.73440 -14.50223 -14.39543 -14.18745 -14.04554 -13.60124 -13.29460 -12.95840 -12.81708 -12.73062 -12.49015 -12.39591 -12.30880 -12.25878 -12.19538 -12.13977 -11.83897 -11.17977 -11.07979 -10.89303 -10.72654 -10.13971 -9.75568 -8.89487 -8.81468 -8.47589 -6.15825 0.62265 0.65711 0.76008 1.27319 1.32964 1.44243 1.49727 1.73035 2.17098 2.24699 2.85145 3.17726 3.45612 3.53253 3.70865 3.80236 3.85980 3.92442 4.06418 4.08320 4.18791 4.25108 4.37036 4.51239 4.52120 4.60615 4.63104 4.74104 4.79176 4.81772 4.86031 4.96512 5.04605 5.10407 5.14511 5.28171 5.31495 5.45195 5.57385 5.72338 5.78585 6.02655 6.24363 6.61576 6.96792 7.36017 7.78446 8.75635 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.022920 B = 0.002239 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.337543 B =12502.439330 C =13100.515991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.022 4.022 3 H 0.119 0.881 4 C -0.127 4.127 5 C 0.147 3.853 6 H 0.072 0.928 7 N -0.709 5.709 8 C 0.512 3.488 9 O -0.577 6.577 10 C -0.076 4.076 11 C -0.146 4.146 12 C -0.057 4.057 13 C -0.208 4.208 14 C 0.110 3.890 15 O -0.234 6.234 16 C -0.414 4.414 17 H 0.099 0.901 18 C -0.025 4.025 19 N -0.921 5.921 20 Si 1.019 2.981 21 H -0.255 1.255 22 H -0.270 1.270 23 H -0.261 1.261 24 C -0.246 4.246 25 C -0.061 4.061 26 C -0.069 4.069 27 S -0.347 6.347 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.422 0.578 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.148 0.852 37 H 0.111 0.889 38 H 0.273 0.727 39 H 0.116 0.884 40 H 0.138 0.862 41 H 0.082 0.918 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.944 30.941 -0.607 31.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.151 4.151 3 H 0.137 0.863 4 C -0.166 4.166 5 C 0.039 3.961 6 H 0.090 0.910 7 N -0.363 5.363 8 C 0.300 3.700 9 O -0.455 6.455 10 C -0.115 4.115 11 C -0.147 4.147 12 C -0.075 4.075 13 C -0.227 4.227 14 C 0.060 3.940 15 O -0.141 6.141 16 C -0.491 4.491 17 H 0.117 0.883 18 C -0.222 4.222 19 N -0.560 5.560 20 Si 0.838 3.162 21 H -0.179 1.179 22 H -0.194 1.194 23 H -0.185 1.185 24 C -0.265 4.265 25 C -0.079 4.079 26 C -0.218 4.218 27 S -0.122 6.122 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.129 0.871 32 H 0.117 0.883 33 H 0.260 0.740 34 H 0.149 0.851 35 H 0.153 0.847 36 H 0.166 0.834 37 H 0.129 0.871 38 H 0.082 0.918 39 H 0.134 0.866 40 H 0.156 0.844 41 H 0.101 0.899 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.707 29.883 -2.066 31.194 hybrid contribution 0.988 -0.923 0.496 1.440 sum -7.719 28.960 -1.570 30.012 Atomic orbital electron populations 1.21864 0.91298 1.02942 1.03440 1.23731 0.99804 1.01053 0.90483 0.86304 1.22237 1.01665 0.94864 0.97798 1.21786 0.89319 0.99239 0.85765 0.90996 1.45918 1.41327 1.09499 1.39601 1.21273 0.82786 0.82119 0.83840 1.90783 1.59498 1.46227 1.49035 1.20540 0.98806 0.92313 0.99879 1.19283 0.99153 0.95870 1.00367 1.20896 0.97882 0.90820 0.97926 1.20457 1.00590 0.97164 1.04480 1.19958 0.94278 0.84566 0.95167 1.83933 1.56647 1.19826 1.53670 1.21769 1.17973 0.93064 1.16254 0.88324 1.26615 1.00779 0.94409 1.00395 1.70180 1.42936 1.02764 1.40075 0.84649 0.77056 0.77657 0.76834 1.17867 1.19425 1.18511 1.21233 1.05019 0.95014 1.05215 1.20945 0.96655 0.93489 0.96775 1.24727 0.98389 1.02156 0.96558 1.88307 1.41823 1.59269 1.22764 0.92484 0.88775 0.92216 0.87100 0.88317 0.73964 0.85111 0.84745 0.83409 0.87091 0.91832 0.86625 0.84384 0.89902 0.87211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.04 71.98 0.65 -0.52 16 2 C -0.02 -0.21 3.92 30.83 0.12 -0.09 16 3 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 4 C -0.13 -0.94 5.73 30.83 0.18 -0.76 16 5 C 0.15 2.18 2.85 45.72 0.13 2.31 16 6 H 0.07 1.60 7.54 -2.39 -0.02 1.58 16 7 N -0.71 -8.73 5.09 -439.07 -2.23 -10.97 16 8 C 0.51 11.03 7.81 87.66 0.68 11.72 16 9 O -0.58 -19.95 15.68 -3.04 -0.05 -20.00 16 10 C -0.08 -1.33 5.83 29.10 0.17 -1.16 16 11 C -0.15 -4.48 4.38 -19.83 -0.09 -4.57 16 12 C -0.06 -1.98 9.69 22.25 0.22 -1.76 16 13 C -0.21 -9.35 9.99 22.39 0.22 -9.13 16 14 C 0.11 5.82 6.65 22.58 0.15 5.97 16 15 O -0.23 -14.75 9.76 -22.70 -0.22 -14.97 16 16 C -0.41 -25.20 9.49 67.92 0.64 -24.55 16 17 H 0.10 5.53 5.20 -2.91 -0.02 5.52 16 18 C -0.02 -1.46 5.49 84.83 0.47 -0.99 16 19 N -0.92 -58.30 13.67 21.61 0.30 -58.01 16 20 Si 1.02 44.41 29.55 68.60 2.03 46.44 16 21 H -0.25 -10.30 7.11 99.48 0.71 -9.60 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 24 C -0.25 -11.32 9.17 22.39 0.21 -11.12 16 25 C -0.06 -2.17 9.69 22.25 0.22 -1.95 16 26 C -0.07 -1.21 7.14 72.72 0.52 -0.69 16 27 S -0.35 -6.48 22.66 -56.49 -1.28 -7.76 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.11 0.18 7.68 -2.39 -0.02 0.16 16 32 H 0.10 0.63 7.62 -2.39 -0.02 0.61 16 33 H 0.42 1.54 8.31 -92.70 -0.77 0.77 16 34 H 0.13 1.45 8.08 -2.39 -0.02 1.43 16 35 H 0.13 1.39 8.08 -2.39 -0.02 1.37 16 36 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 37 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 38 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 39 H 0.12 5.43 5.64 -2.91 -0.02 5.41 16 40 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 41 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -85.81 364.09 3.29 -82.52 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.27 Total: 20.04 kcal Atomic # 6 Polarization: -41.78 SS G_CDS: 4.49 Total: -37.30 kcal Atomic # 7 Polarization: -67.04 SS G_CDS: -1.94 Total: -68.98 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -0.27 Total: -34.98 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: -6.48 SS G_CDS: -1.28 Total: -7.76 kcal Total: -85.81 3.29 -82.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839828560.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.055 kcal (2) G-P(sol) polarization free energy of solvation -85.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds