Wall clock time and date at job start Sat Apr 11 2020 00:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.74868 * 2 1 4 4 C 1.54379 * 110.84857 * 123.47633 * 2 1 3 5 5 O 1.43244 * 107.58461 * 139.54798 * 4 2 1 6 6 C 1.43645 * 109.97338 * 1.70954 * 5 4 2 7 7 H 1.08998 * 110.30758 * 94.58957 * 6 5 4 8 8 C 1.50701 * 110.31112 * 216.65679 * 6 5 4 9 9 O 1.21305 * 119.99381 * 3.54843 * 8 6 5 10 10 N 1.34766 * 120.00081 * 183.54866 * 8 6 5 11 11 C 1.40145 * 119.99840 * 184.48018 * 10 8 6 12 12 C 1.38646 * 120.09737 * 325.32535 * 11 10 8 13 13 C 1.38253 * 120.00872 * 179.97438 * 12 11 10 14 14 C 1.38298 * 120.20839 * 0.02562 * 13 12 11 15 15 C 1.38203 * 120.20220 * 359.71336 * 14 13 12 16 16 C 1.38789 * 119.98167 * 0.56321 * 15 14 13 17 17 S 1.76205 * 120.09953 * 179.72099 * 16 15 14 18 18 C 1.81397 * 103.00050 * 359.72111 * 17 16 15 19 19 C 1.50700 * 109.46989 * 180.02562 * 18 17 16 20 20 H 1.08011 * 120.00157 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00247 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99634 * 0.27758 * 21 19 18 23 23 Si 1.86802 * 120.00118 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46925 * 90.00474 * 23 21 19 25 25 H 1.48505 * 109.46903 * 209.99893 * 23 21 19 26 26 H 1.48490 * 109.47121 * 330.00255 * 23 21 19 27 27 C 1.54940 * 105.13744 * 335.57491 * 6 5 4 28 28 H 1.09000 * 109.47012 * 297.97417 * 1 2 3 29 29 H 1.09003 * 109.47456 * 57.97631 * 1 2 3 30 30 H 1.09001 * 109.47322 * 177.97649 * 1 2 3 31 31 H 1.09002 * 109.83231 * 20.03577 * 4 2 1 32 32 H 1.08996 * 109.90434 * 259.10035 * 4 2 1 33 33 H 0.97003 * 120.00524 * 4.47599 * 10 8 6 34 34 H 1.07999 * 120.00062 * 0.02562 * 12 11 10 35 35 H 1.08001 * 119.90032 * 180.02562 * 13 12 11 36 36 H 1.07997 * 119.90196 * 179.97438 * 14 13 12 37 37 H 1.07997 * 120.01216 * 180.29540 * 15 14 13 38 38 H 1.08992 * 109.47030 * 60.00329 * 18 17 16 39 39 H 1.09001 * 109.46791 * 299.99843 * 18 17 16 40 40 H 0.96996 * 119.99745 * 359.72196 * 22 21 19 41 41 H 1.08996 * 111.12607 * 154.36155 * 27 6 5 42 42 H 1.09006 * 111.12400 * 278.52895 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9162 1.0193 0.0000 4 6 2.0794 -0.7958 1.2034 5 8 3.2045 -1.5539 0.7436 6 6 3.4464 -1.2795 -0.6455 7 1 4.1948 -0.4941 -0.7513 8 6 3.8981 -2.5300 -1.3548 9 8 3.9460 -3.5835 -0.7554 10 7 4.2487 -2.4780 -2.6550 11 6 4.5784 -3.6556 -3.3396 12 6 5.2332 -4.6837 -2.6790 13 6 5.5571 -5.8448 -3.3559 14 6 5.2304 -5.9853 -4.6924 15 6 4.5729 -4.9682 -5.3580 16 6 4.2489 -3.7967 -4.6879 17 16 3.4171 -2.4949 -5.5354 18 6 3.2253 -3.1575 -7.2131 19 6 2.5190 -2.1436 -8.0759 20 1 2.2163 -1.1952 -7.6569 21 6 2.2602 -2.4261 -9.4003 22 7 2.6249 -3.5827 -9.9094 23 14 1.3842 -1.1696 -10.4695 24 1 2.3863 -0.2821 -11.1124 25 1 0.6005 -1.8718 -11.5174 26 1 0.4695 -0.3562 -9.6289 27 6 2.0827 -0.8051 -1.2077 28 1 -0.3633 0.4821 0.9076 29 1 -0.3634 0.5449 -0.8713 30 1 -0.3634 -1.0270 -0.0363 31 1 1.3108 -1.4685 1.5838 32 1 2.3926 -0.1096 1.9902 33 1 4.2729 -1.6254 -3.1172 34 1 5.4897 -4.5779 -1.6352 35 1 6.0668 -6.6448 -2.8395 36 1 5.4861 -6.8943 -5.2165 37 1 4.3150 -5.0830 -6.4004 38 1 2.6386 -4.0754 -7.1764 39 1 4.2078 -3.3708 -7.6341 40 1 3.0795 -4.2352 -9.3540 41 1 2.2185 -0.1636 -2.0784 42 1 1.4385 -1.6524 -1.4428 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888861294.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:54 Heat of formation + Delta-G solvation = -86.914783 kcal Electronic energy + Delta-G solvation = -24176.693738 eV Core-core repulsion = 20632.468835 eV Total energy + Delta-G solvation = -3544.224903 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.92196 -40.46064 -39.12916 -36.08192 -35.69890 -34.59159 -32.27366 -32.08339 -30.23523 -30.04522 -27.32587 -25.62108 -25.11245 -24.12033 -23.19897 -21.79143 -21.22925 -19.69210 -18.75562 -18.63483 -18.00741 -17.57132 -16.71703 -16.53154 -16.34069 -16.08608 -15.66072 -15.65702 -15.36274 -14.98614 -14.95078 -14.58254 -14.51533 -14.00990 -13.91268 -13.79407 -13.51019 -13.39737 -13.03981 -12.77892 -12.59768 -12.23694 -12.16984 -12.00886 -11.92982 -11.73856 -11.54317 -11.23540 -11.06220 -10.98389 -10.85058 -10.61873 -10.50210 -9.48426 -8.84298 -8.32117 -6.59365 0.08161 0.22647 0.62822 1.33740 1.53511 1.61067 1.61533 1.68537 1.80909 2.50234 2.65019 2.84730 3.02408 3.22333 3.49352 3.74991 3.76582 3.91253 4.00170 4.06674 4.19347 4.27998 4.37009 4.40775 4.50321 4.54141 4.57175 4.64803 4.70689 4.76628 4.77394 4.87270 4.99878 5.07151 5.16755 5.17353 5.33761 5.35365 5.44175 5.56097 5.77387 5.90458 5.94368 6.22598 6.32099 6.89538 7.20266 8.56903 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.011225 B = 0.003717 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.859029 B = 7530.436388 C = 9777.378821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 H 0.114 0.886 4 C 0.045 3.955 5 O -0.384 6.384 6 C 0.071 3.929 7 H 0.132 0.868 8 C 0.512 3.488 9 O -0.545 6.545 10 N -0.654 5.654 11 C 0.145 3.855 12 C -0.115 4.115 13 C -0.108 4.108 14 C -0.110 4.110 15 C -0.136 4.136 16 C -0.121 4.121 17 S -0.125 6.125 18 C 0.058 3.942 19 C -0.612 4.612 20 H 0.062 0.938 21 C -0.020 4.020 22 N -0.925 5.925 23 Si 1.125 2.875 24 H -0.268 1.268 25 H -0.280 1.280 26 H -0.267 1.267 27 C -0.144 4.144 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.421 0.579 34 H 0.140 0.860 35 H 0.160 0.840 36 H 0.152 0.848 37 H 0.112 0.888 38 H 0.015 0.985 39 H 0.018 0.982 40 H 0.258 0.742 41 H 0.114 0.886 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.215 6.962 19.088 20.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.132 4.132 3 H 0.132 0.868 4 C -0.031 4.031 5 O -0.303 6.303 6 C 0.011 3.989 7 H 0.149 0.851 8 C 0.300 3.700 9 O -0.421 6.421 10 N -0.301 5.301 11 C 0.045 3.955 12 C -0.137 4.137 13 C -0.129 4.129 14 C -0.130 4.130 15 C -0.160 4.160 16 C -0.236 4.236 17 S 0.120 5.880 18 C -0.090 4.090 19 C -0.650 4.650 20 H 0.081 0.919 21 C -0.220 4.220 22 N -0.560 5.560 23 Si 0.944 3.056 24 H -0.194 1.194 25 H -0.206 1.206 26 H -0.192 1.192 27 C -0.182 4.182 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.259 0.741 34 H 0.157 0.843 35 H 0.177 0.823 36 H 0.169 0.831 37 H 0.130 0.870 38 H 0.033 0.967 39 H 0.036 0.964 40 H 0.067 0.933 41 H 0.132 0.868 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.336 7.538 18.527 20.005 hybrid contribution 0.980 -1.598 0.462 1.931 sum 1.317 5.940 18.989 19.940 Atomic orbital electron populations 1.21745 0.92773 1.02108 1.03412 1.22728 0.97856 1.00534 0.92114 0.86779 1.23546 0.87640 0.94551 0.97347 1.88483 1.50583 1.68721 1.22555 1.22908 1.00364 0.92797 0.82866 0.85064 1.21298 0.75947 0.91586 0.81164 1.90676 1.52665 1.32763 1.66040 1.43380 1.66761 1.09137 1.10835 1.17278 0.99534 0.89398 0.89325 1.21326 0.97839 0.93712 1.00820 1.21391 0.99795 0.97652 0.94017 1.21349 0.97836 0.98771 0.95053 1.21213 1.01303 0.93570 0.99931 1.21943 1.05261 0.99780 0.96641 1.84587 1.70711 1.23096 1.09641 1.21125 0.98516 0.98777 0.90591 1.21847 1.42462 1.03212 0.97508 0.91930 1.27497 0.96168 1.00715 0.97622 1.70898 1.37994 1.07327 1.39815 0.82838 0.75923 0.72604 0.74188 1.19352 1.20579 1.19151 1.23408 0.93280 1.01004 1.00494 0.90508 0.91365 0.93384 0.91343 0.88805 0.74061 0.84278 0.82277 0.83054 0.86958 0.96697 0.96358 0.93254 0.86760 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.14 71.98 0.66 -1.04 16 2 C -0.11 -1.47 3.60 -9.53 -0.03 -1.50 16 3 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 4 C 0.05 0.73 7.40 72.45 0.54 1.27 16 5 O -0.38 -9.45 10.61 -130.50 -1.38 -10.83 16 6 C 0.07 1.50 3.86 30.51 0.12 1.61 16 7 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 8 C 0.51 14.76 7.02 87.66 0.62 15.38 16 9 O -0.55 -19.88 13.97 15.37 0.21 -19.66 16 10 N -0.65 -18.68 5.02 -303.01 -1.52 -20.20 16 11 C 0.15 4.90 6.32 38.22 0.24 5.14 16 12 C -0.12 -3.63 8.70 22.37 0.19 -3.44 16 13 C -0.11 -2.93 10.04 22.29 0.22 -2.70 16 14 C -0.11 -3.22 10.04 22.28 0.22 -3.00 16 15 C -0.14 -4.97 9.36 22.39 0.21 -4.76 16 16 C -0.12 -4.57 6.12 22.71 0.14 -4.43 16 17 S -0.13 -5.17 20.72 -56.49 -1.17 -6.34 16 18 C 0.06 2.92 3.40 71.24 0.24 3.17 16 19 C -0.61 -33.50 9.13 25.60 0.23 -33.27 16 20 H 0.06 3.36 7.71 -2.91 -0.02 3.34 16 21 C -0.02 -1.07 5.46 84.65 0.46 -0.61 16 22 N -0.92 -54.52 13.65 21.45 0.29 -54.23 16 23 Si 1.12 47.58 29.90 68.60 2.05 49.63 16 24 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 25 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 27 C -0.14 -2.52 6.02 32.05 0.19 -2.33 16 28 H 0.08 0.67 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.05 0.69 8.12 -2.39 -0.02 0.67 16 31 H 0.07 1.15 7.81 -2.39 -0.02 1.13 16 32 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.42 10.33 7.97 -92.71 -0.74 9.59 16 34 H 0.14 4.41 6.20 -2.91 -0.02 4.39 16 35 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 36 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 37 H 0.11 4.47 5.88 -2.91 -0.02 4.46 16 38 H 0.01 0.80 7.60 -2.39 -0.02 0.78 16 39 H 0.02 0.97 7.63 -2.39 -0.02 0.95 16 40 H 0.26 15.33 7.22 -92.71 -0.67 14.66 16 41 H 0.11 1.60 8.14 -2.39 -0.02 1.59 16 42 H 0.07 1.47 7.93 -2.38 -0.02 1.45 16 Total: -1.00 -70.95 359.85 3.14 -67.81 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.40 Total: 24.33 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: 4.26 Total: -30.51 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -1.23 Total: -74.43 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -1.17 Total: -30.49 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.05 Total: 49.63 kcal Atomic # 16 Polarization: -5.17 SS G_CDS: -1.17 Total: -6.34 kcal Total: -70.95 3.14 -67.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888861294.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.100 kcal (2) G-P(sol) polarization free energy of solvation -70.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds