Wall clock time and date at job start Sat Apr 11 2020 00:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34226 * 116.99722 * 2 1 4 4 O 1.20828 * 120.00193 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99980 * 179.97438 * 3 2 1 6 6 F 1.39897 * 110.88921 * 310.70126 * 5 3 2 7 7 C 1.55163 * 111.00529 * 186.82073 * 5 3 2 8 8 C 1.54375 * 102.91924 * 206.45555 * 7 5 3 9 9 N 1.47018 * 107.28780 * 22.13873 * 8 7 5 10 10 C 1.34776 * 125.64488 * 181.05823 * 9 8 7 11 11 O 1.21553 * 120.00181 * 174.33607 * 10 9 8 12 12 C 1.47889 * 120.00160 * 354.33275 * 10 9 8 13 13 C 1.39913 * 120.02209 * 7.13408 * 12 10 9 14 14 C 1.38330 * 120.35463 * 179.78301 * 13 12 10 15 15 C 1.37756 * 120.41531 * 0.47675 * 14 13 12 16 16 C 1.40750 * 120.03621 * 359.78021 * 15 14 13 17 17 C 1.41441 * 120.17812 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99978 * 34.78457 * 17 16 15 19 19 C 1.39933 * 119.99839 * 214.78382 * 17 16 15 20 20 N 1.30819 * 120.00370 * 355.54277 * 19 17 16 21 21 Si 1.86803 * 119.99678 * 175.53757 * 19 17 16 22 22 H 1.48501 * 109.47070 * 60.00349 * 21 19 17 23 23 H 1.48505 * 109.46949 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47211 * 300.00058 * 21 19 17 25 25 C 1.38999 * 120.02489 * 187.41115 * 12 10 9 26 26 C 1.47422 * 108.70692 * 1.09342 * 9 8 7 27 27 H 1.09006 * 109.47206 * 60.00396 * 1 2 3 28 28 H 1.08996 * 109.47645 * 300.00003 * 1 2 3 29 29 H 1.09006 * 109.47093 * 179.97438 * 1 2 3 30 30 H 1.08996 * 110.71843 * 324.79030 * 7 5 3 31 31 H 1.08995 * 110.71762 * 88.06338 * 7 5 3 32 32 H 1.08996 * 109.84499 * 262.73311 * 8 7 5 33 33 H 1.08998 * 110.02520 * 141.64959 * 8 7 5 34 34 H 1.07996 * 119.82396 * 359.97438 * 13 12 10 35 35 H 1.08004 * 119.79666 * 180.21002 * 14 13 12 36 36 H 1.07997 * 119.98312 * 179.76434 * 15 14 13 37 37 H 0.97009 * 120.00212 * 179.97438 * 20 19 17 38 38 H 1.08007 * 120.19971 * 359.97438 * 25 12 10 39 39 H 1.08999 * 110.36573 * 217.03597 * 26 9 8 40 40 H 1.08994 * 110.46475 * 94.75792 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 9 4.1086 0.4501 0.9918 7 6 4.0462 2.7404 0.1725 8 6 5.4301 2.7328 -0.5116 9 7 5.4496 1.5975 -1.4456 10 6 6.4907 1.2367 -2.2216 11 8 6.4321 0.2179 -2.8821 12 6 7.7045 2.0801 -2.2696 13 6 7.8351 3.1691 -1.4009 14 6 8.9694 3.9600 -1.4369 15 6 9.9791 3.6907 -2.3345 16 6 9.8632 2.6027 -3.2198 17 6 10.8978 2.3238 -4.1430 18 1 11.9277 2.4991 -3.8690 19 6 10.5870 1.8209 -5.4113 20 7 9.3486 1.5264 -5.7128 21 14 11.9406 1.5702 -6.6740 22 1 12.9415 0.6103 -6.1428 23 1 11.3545 1.0318 -7.9277 24 1 12.6019 2.8697 -6.9555 25 6 8.7140 1.7950 -3.1816 26 6 4.1414 0.9198 -1.3933 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.3700 3.4295 -0.3333 31 1 4.1387 2.9945 1.2284 32 1 6.2124 2.6101 0.2373 33 1 5.5820 3.6642 -1.0570 34 1 7.0473 3.3917 -0.6965 35 1 9.0622 4.7964 -0.7599 36 1 10.8600 4.3150 -2.3591 37 1 9.1331 1.1781 -6.5922 38 1 8.6156 0.9578 -3.8568 39 1 4.2688 -0.1586 -1.4875 40 1 3.4867 1.2939 -2.1803 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074496294.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:23 Heat of formation + Delta-G solvation = -112.476890 kcal Electronic energy + Delta-G solvation = -26838.121674 eV Core-core repulsion = 22726.575138 eV Total energy + Delta-G solvation = -4111.546535 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.121 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.19238 -40.93543 -39.74386 -37.50277 -36.98794 -36.48198 -33.71828 -31.85008 -30.39934 -29.57199 -29.39820 -27.96144 -25.39859 -24.94794 -23.21960 -21.71199 -20.93577 -20.61924 -19.29377 -18.57351 -17.80819 -17.38880 -16.98386 -16.10266 -15.67907 -15.53849 -15.48193 -15.11922 -14.72938 -14.69880 -14.52002 -13.59109 -13.50656 -13.38084 -13.22606 -13.07145 -12.70217 -12.67088 -12.45594 -12.39754 -11.97828 -11.71667 -11.67269 -11.33273 -11.23305 -11.13408 -10.99814 -10.83368 -10.53940 -10.27061 -10.03621 -9.61499 -9.30506 -9.07785 -8.51934 -7.67288 -7.40409 -6.64745 -4.45915 1.52987 2.01157 2.13174 2.82256 3.09081 3.10968 3.14502 3.16817 3.59144 3.73381 3.85396 3.96188 4.06189 4.43559 4.68242 4.70541 4.72862 4.81332 4.97227 5.14464 5.26225 5.41489 5.45343 5.52832 5.62938 5.65782 5.79522 5.83274 6.04643 6.24088 6.36537 6.67476 6.96336 7.00484 7.13626 7.25345 7.36902 7.59666 7.70576 7.84114 8.00102 8.18978 8.51187 8.73920 8.83663 8.86269 10.26243 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.024792 B = 0.002973 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.116229 B = 9417.246938 C =10157.475499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.345 6.345 3 C 0.463 3.537 4 O -0.483 6.483 5 C 0.117 3.883 6 F -0.169 7.169 7 C -0.142 4.142 8 C 0.099 3.901 9 N -0.622 5.622 10 C 0.585 3.415 11 O -0.535 6.535 12 C -0.132 4.132 13 C -0.238 4.238 14 C -0.109 4.109 15 C -0.195 4.195 16 C 0.092 3.908 17 C -0.465 4.465 18 H 0.078 0.922 19 C 0.069 3.931 20 N -0.805 5.805 21 Si 0.918 3.082 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.266 1.266 25 C -0.079 4.079 26 C 0.100 3.900 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.127 0.873 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.282 0.718 38 H 0.144 0.856 39 H 0.104 0.896 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.278 0.575 10.093 17.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.260 6.260 3 C 0.303 3.697 4 O -0.369 6.369 5 C 0.096 3.904 6 F -0.149 7.149 7 C -0.180 4.180 8 C -0.023 4.023 9 N -0.358 5.358 10 C 0.379 3.621 11 O -0.412 6.412 12 C -0.136 4.136 13 C -0.257 4.257 14 C -0.127 4.127 15 C -0.215 4.215 16 C 0.090 3.910 17 C -0.495 4.495 18 H 0.096 0.904 19 C -0.147 4.147 20 N -0.431 5.431 21 Si 0.742 3.258 22 H -0.190 1.190 23 H -0.203 1.203 24 H -0.191 1.191 25 C -0.099 4.099 26 C -0.024 4.024 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.123 0.877 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.144 0.856 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.093 0.907 38 H 0.162 0.838 39 H 0.122 0.878 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.585 0.160 9.477 17.394 hybrid contribution 0.267 -0.032 -0.496 0.565 sum -14.317 0.127 8.981 16.902 Atomic orbital electron populations 1.23401 0.75506 1.04307 1.02851 1.86584 1.24044 1.32298 1.83102 1.23502 0.91002 0.82184 0.73052 1.90705 1.66076 1.36166 1.43919 1.21821 0.85604 0.93217 0.89749 1.92979 1.86300 1.73456 1.62164 1.23447 0.97925 0.92174 1.04467 1.22648 0.95529 0.91323 0.92815 1.48264 1.12753 1.30979 1.43846 1.18680 0.81720 0.84726 0.76933 1.90727 1.81318 1.25725 1.43430 1.19403 0.94411 0.97966 1.01780 1.21742 1.00524 0.99357 1.04041 1.20513 0.94663 0.98733 0.98795 1.21313 0.99412 0.99142 1.01666 1.17644 0.92850 0.89468 0.91016 1.19483 0.94405 1.38446 0.97214 0.90362 1.25912 0.96392 0.92723 0.99705 1.69709 1.18709 1.32525 1.22190 0.86214 0.80927 0.79464 0.79151 1.18975 1.20347 1.19092 1.21939 0.92540 0.99608 0.95814 1.22513 0.86363 1.01248 0.92322 0.91427 0.91556 0.87557 0.87053 0.87744 0.89187 0.88651 0.85585 0.88760 0.88515 0.90708 0.83842 0.87796 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.34 -3.69 10.57 -39.25 -0.41 -4.10 16 3 C 0.46 5.38 7.04 36.00 0.25 5.64 16 4 O -0.48 -6.11 15.43 -18.75 -0.29 -6.40 16 5 C 0.12 1.40 1.58 -89.62 -0.14 1.26 16 6 F -0.17 -2.26 17.01 2.25 0.04 -2.22 16 7 C -0.14 -1.47 5.96 -24.87 -0.15 -1.61 16 8 C 0.10 1.28 4.87 -3.04 -0.01 1.26 16 9 N -0.62 -10.43 3.33 -176.70 -0.59 -11.02 16 10 C 0.59 12.80 7.81 -12.31 -0.10 12.70 16 11 O -0.54 -13.39 16.59 5.32 0.09 -13.30 16 12 C -0.13 -3.08 5.87 -105.04 -0.62 -3.69 16 13 C -0.24 -4.77 8.62 -38.92 -0.34 -5.10 16 14 C -0.11 -2.23 10.01 -39.72 -0.40 -2.62 16 15 C -0.20 -4.54 9.78 -38.81 -0.38 -4.92 16 16 C 0.09 2.42 5.55 -106.87 -0.59 1.83 16 17 C -0.47 -12.22 9.04 -37.73 -0.34 -12.56 16 18 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 19 C 0.07 1.75 5.42 -17.35 -0.09 1.65 16 20 N -0.81 -21.43 10.60 55.55 0.59 -20.84 16 21 Si 0.92 19.02 29.56 -169.99 -5.03 14.00 16 22 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 25 C -0.08 -2.08 8.21 -38.44 -0.32 -2.40 16 26 C 0.10 1.40 6.21 -2.53 -0.02 1.38 16 27 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 28 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 29 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.11 1.07 7.29 -51.93 -0.38 0.69 16 31 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.09 1.14 6.73 -51.93 -0.35 0.79 16 33 H 0.10 1.19 6.73 -51.93 -0.35 0.84 16 34 H 0.13 2.02 2.71 -59.10 -0.16 1.86 16 35 H 0.09 1.61 8.06 -52.48 -0.42 1.19 16 36 H 0.10 2.09 8.06 -52.49 -0.42 1.66 16 37 H 0.28 6.95 8.30 -40.82 -0.34 6.62 16 38 H 0.14 4.15 5.74 -52.48 -0.30 3.85 16 39 H 0.10 1.54 7.99 -51.93 -0.41 1.12 16 40 H 0.09 1.11 8.03 -51.93 -0.42 0.69 16 LS Contribution 340.94 15.07 5.14 5.14 Total: -1.00 -31.46 340.94 -7.09 -38.54 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -4.45 Total: 6.08 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -2.17 Total: -5.88 kcal Atomic # 7 Polarization: -31.86 SS G_CDS: 0.00 Total: -31.86 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.62 Total: -23.80 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.46 -7.09 -38.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074496294.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.935 kcal (2) G-P(sol) polarization free energy of solvation -31.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds