Wall clock time and date at job start Sat Apr 11 2020 00:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34226 * 116.99722 * 2 1 4 4 O 1.20828 * 120.00193 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99980 * 179.97438 * 3 2 1 6 6 F 1.39897 * 110.88921 * 310.70126 * 5 3 2 7 7 C 1.55163 * 111.00529 * 186.82073 * 5 3 2 8 8 C 1.54375 * 102.91924 * 206.45555 * 7 5 3 9 9 N 1.47018 * 107.28780 * 22.13873 * 8 7 5 10 10 C 1.34776 * 125.64488 * 181.05823 * 9 8 7 11 11 O 1.21553 * 120.00181 * 174.33607 * 10 9 8 12 12 C 1.47889 * 120.00160 * 354.33275 * 10 9 8 13 13 C 1.39913 * 120.02209 * 7.13408 * 12 10 9 14 14 C 1.38330 * 120.35463 * 179.78301 * 13 12 10 15 15 C 1.37756 * 120.41531 * 0.47675 * 14 13 12 16 16 C 1.40750 * 120.03621 * 359.78021 * 15 14 13 17 17 C 1.41441 * 120.17812 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99978 * 34.78457 * 17 16 15 19 19 C 1.39933 * 119.99839 * 214.78382 * 17 16 15 20 20 N 1.30819 * 120.00370 * 355.54277 * 19 17 16 21 21 Si 1.86803 * 119.99678 * 175.53757 * 19 17 16 22 22 H 1.48501 * 109.47070 * 60.00349 * 21 19 17 23 23 H 1.48505 * 109.46949 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47211 * 300.00058 * 21 19 17 25 25 C 1.38999 * 120.02489 * 187.41115 * 12 10 9 26 26 C 1.47422 * 108.70692 * 1.09342 * 9 8 7 27 27 H 1.09006 * 109.47206 * 60.00396 * 1 2 3 28 28 H 1.08996 * 109.47645 * 300.00003 * 1 2 3 29 29 H 1.09006 * 109.47093 * 179.97438 * 1 2 3 30 30 H 1.08996 * 110.71843 * 324.79030 * 7 5 3 31 31 H 1.08995 * 110.71762 * 88.06338 * 7 5 3 32 32 H 1.08996 * 109.84499 * 262.73311 * 8 7 5 33 33 H 1.08998 * 110.02520 * 141.64959 * 8 7 5 34 34 H 1.07996 * 119.82396 * 359.97438 * 13 12 10 35 35 H 1.08004 * 119.79666 * 180.21002 * 14 13 12 36 36 H 1.07997 * 119.98312 * 179.76434 * 15 14 13 37 37 H 0.97009 * 120.00212 * 179.97438 * 20 19 17 38 38 H 1.08007 * 120.19971 * 359.97438 * 25 12 10 39 39 H 1.08999 * 110.36573 * 217.03597 * 26 9 8 40 40 H 1.08994 * 110.46475 * 94.75792 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 9 4.1086 0.4501 0.9918 7 6 4.0462 2.7404 0.1725 8 6 5.4301 2.7328 -0.5116 9 7 5.4496 1.5975 -1.4456 10 6 6.4907 1.2367 -2.2216 11 8 6.4321 0.2179 -2.8821 12 6 7.7045 2.0801 -2.2696 13 6 7.8351 3.1691 -1.4009 14 6 8.9694 3.9600 -1.4369 15 6 9.9791 3.6907 -2.3345 16 6 9.8632 2.6027 -3.2198 17 6 10.8978 2.3238 -4.1430 18 1 11.9277 2.4991 -3.8690 19 6 10.5870 1.8209 -5.4113 20 7 9.3486 1.5264 -5.7128 21 14 11.9406 1.5702 -6.6740 22 1 12.9415 0.6103 -6.1428 23 1 11.3545 1.0318 -7.9277 24 1 12.6019 2.8697 -6.9555 25 6 8.7140 1.7950 -3.1816 26 6 4.1414 0.9198 -1.3933 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.3700 3.4295 -0.3333 31 1 4.1387 2.9945 1.2284 32 1 6.2124 2.6101 0.2373 33 1 5.5820 3.6642 -1.0570 34 1 7.0473 3.3917 -0.6965 35 1 9.0622 4.7964 -0.7599 36 1 10.8600 4.3150 -2.3591 37 1 9.1331 1.1781 -6.5922 38 1 8.6156 0.9578 -3.8568 39 1 4.2688 -0.1586 -1.4875 40 1 3.4867 1.2939 -2.1803 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074496294.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:23 Heat of formation + Delta-G solvation = -131.332300 kcal Electronic energy + Delta-G solvation = -26838.939306 eV Core-core repulsion = 22726.575138 eV Total energy + Delta-G solvation = -4112.364167 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.121 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.20121 -41.86414 -41.19202 -38.98915 -38.37214 -37.64216 -35.54420 -33.22926 -31.84553 -31.25315 -30.70902 -28.75450 -27.17324 -26.25986 -24.27976 -23.28805 -22.58369 -21.62469 -20.83319 -19.54651 -19.40693 -18.33633 -18.03670 -17.53940 -17.29840 -16.73427 -16.72915 -16.51757 -16.12996 -16.09163 -15.55326 -15.03153 -14.82058 -14.72818 -14.40942 -14.31034 -14.15122 -13.98150 -13.88699 -13.52450 -13.31342 -13.06024 -12.81251 -12.71370 -12.59207 -12.37541 -12.31827 -11.95342 -11.93222 -11.90254 -11.70040 -11.28202 -11.12144 -10.79673 -9.93042 -9.45351 -9.23884 -8.50563 -6.42409 0.33660 0.62390 1.04344 1.16870 1.37384 1.47916 1.50662 1.85227 2.02546 2.22766 2.60782 2.82288 2.87439 3.16527 3.52767 3.65655 3.73358 3.81607 4.01788 4.21129 4.29827 4.34487 4.39043 4.48354 4.56405 4.64858 4.67332 4.69842 4.87979 4.89987 5.04456 5.08557 5.13475 5.23150 5.37340 5.54919 5.83270 5.93208 6.10765 6.25786 6.29683 6.33678 6.63152 6.92543 6.97307 7.10160 8.41339 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.024792 B = 0.002973 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.116229 B = 9417.246938 C =10157.475499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.356 6.356 3 C 0.469 3.531 4 O -0.492 6.492 5 C 0.120 3.880 6 F -0.177 7.177 7 C -0.127 4.127 8 C 0.084 3.916 9 N -0.616 5.616 10 C 0.579 3.421 11 O -0.584 6.584 12 C -0.145 4.145 13 C -0.214 4.214 14 C -0.106 4.106 15 C -0.198 4.198 16 C 0.057 3.943 17 C -0.502 4.502 18 H 0.081 0.919 19 C 0.022 3.978 20 N -0.846 5.846 21 Si 0.989 3.011 22 H -0.260 1.260 23 H -0.275 1.275 24 H -0.256 1.256 25 C -0.118 4.118 26 C 0.093 3.907 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.132 0.868 30 H 0.125 0.875 31 H 0.134 0.866 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.176 0.824 35 H 0.144 0.856 36 H 0.110 0.890 37 H 0.281 0.719 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.573 2.631 12.397 20.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C 0.309 3.691 4 O -0.379 6.379 5 C 0.100 3.900 6 F -0.157 7.157 7 C -0.164 4.164 8 C -0.036 4.036 9 N -0.350 5.350 10 C 0.372 3.628 11 O -0.465 6.465 12 C -0.148 4.148 13 C -0.232 4.232 14 C -0.123 4.123 15 C -0.218 4.218 16 C 0.055 3.945 17 C -0.533 4.533 18 H 0.099 0.901 19 C -0.190 4.190 20 N -0.474 5.474 21 Si 0.810 3.190 22 H -0.184 1.184 23 H -0.199 1.199 24 H -0.180 1.180 25 C -0.139 4.139 26 C -0.031 4.031 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.150 0.850 30 H 0.143 0.857 31 H 0.152 0.848 32 H 0.120 0.880 33 H 0.127 0.873 34 H 0.193 0.807 35 H 0.162 0.838 36 H 0.128 0.872 37 H 0.092 0.908 38 H 0.123 0.877 39 H 0.107 0.893 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.917 2.245 11.840 19.965 hybrid contribution 0.467 -0.637 -1.001 1.275 sum -15.450 1.608 10.840 18.942 Atomic orbital electron populations 1.23738 0.73410 1.06298 1.03359 1.86570 1.26133 1.31822 1.82672 1.23253 0.90615 0.82354 0.72877 1.90704 1.66167 1.36448 1.44567 1.21806 0.86097 0.94143 0.87976 1.92967 1.86498 1.73948 1.62308 1.23460 0.95979 0.90862 1.06109 1.22943 0.97989 0.90201 0.92497 1.48144 1.12324 1.31802 1.42684 1.18531 0.82618 0.84147 0.77457 1.90692 1.82371 1.27647 1.45752 1.19684 0.94323 0.99187 1.01609 1.22410 1.01396 0.96741 1.02618 1.21053 0.93351 0.99657 0.98276 1.21624 1.00776 0.98226 1.01183 1.17985 0.93199 0.90882 0.92398 1.19774 0.94696 1.40481 0.98354 0.90123 1.26835 0.98630 0.92013 1.01508 1.69871 1.20816 1.34173 1.22538 0.85143 0.77793 0.79709 0.76357 1.18414 1.19940 1.17993 1.21693 0.94758 0.99859 0.97562 1.22674 0.85337 1.00428 0.94643 0.91088 0.90876 0.84984 0.85714 0.84785 0.88049 0.87332 0.80737 0.83788 0.87168 0.90832 0.87708 0.89278 0.88030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.56 113.37 1.20 1.48 16 2 O -0.36 -6.94 10.57 -51.38 -0.54 -7.48 16 3 C 0.47 9.77 7.04 71.24 0.50 10.28 16 4 O -0.49 -11.01 15.43 21.96 0.34 -10.67 16 5 C 0.12 2.59 1.58 -10.14 -0.02 2.58 16 6 F -0.18 -4.35 17.01 44.97 0.76 -3.59 16 7 C -0.13 -2.07 5.96 31.80 0.19 -1.88 16 8 C 0.08 1.85 4.87 86.75 0.42 2.27 16 9 N -0.62 -19.89 3.33 -831.23 -2.76 -22.66 16 10 C 0.58 25.88 7.81 86.80 0.68 26.56 16 11 O -0.58 -30.97 16.59 -3.88 -0.06 -31.04 16 12 C -0.14 -6.82 5.87 -20.13 -0.12 -6.94 16 13 C -0.21 -7.97 8.62 22.70 0.20 -7.77 16 14 C -0.11 -3.96 10.01 22.18 0.22 -3.74 16 15 C -0.20 -9.06 9.78 22.77 0.22 -8.83 16 16 C 0.06 3.12 5.55 -21.32 -0.12 3.00 16 17 C -0.50 -27.66 9.04 23.47 0.21 -27.45 16 18 H 0.08 4.19 7.85 -2.91 -0.02 4.16 16 19 C 0.02 1.15 5.42 85.25 0.46 1.61 16 20 N -0.85 -48.18 10.60 21.82 0.23 -47.95 16 21 Si 0.99 40.52 29.56 68.60 2.03 42.55 16 22 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 23 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 24 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 25 C -0.12 -6.60 8.21 23.01 0.19 -6.41 16 26 C 0.09 2.50 6.21 86.86 0.54 3.04 16 27 H 0.07 0.80 8.13 -2.38 -0.02 0.78 16 28 H 0.07 0.77 8.13 -2.39 -0.02 0.75 16 29 H 0.13 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.12 1.81 7.29 -2.39 -0.02 1.79 16 31 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.10 2.07 6.73 -2.39 -0.02 2.05 16 33 H 0.11 2.18 6.73 -2.39 -0.02 2.17 16 34 H 0.18 4.74 2.71 -9.12 -0.02 4.71 16 35 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 36 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 37 H 0.28 14.88 8.30 -92.70 -0.77 14.11 16 38 H 0.11 6.63 5.74 -2.91 -0.02 6.61 16 39 H 0.09 2.69 7.99 -2.39 -0.02 2.67 16 40 H 0.10 2.47 8.03 -2.39 -0.02 2.45 16 Total: -1.00 -74.71 340.94 5.84 -68.87 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 1.08 Total: 24.17 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 4.78 Total: -12.20 kcal Atomic # 7 Polarization: -68.07 SS G_CDS: -2.53 Total: -70.61 kcal Atomic # 8 Polarization: -48.92 SS G_CDS: -0.27 Total: -49.19 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.76 Total: -3.59 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -74.71 5.84 -68.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074496294.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.466 kcal (2) G-P(sol) polarization free energy of solvation -74.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds