Wall clock time and date at job start Sat Apr 11 2020 00:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 117.00261 * 2 1 4 4 O 1.20828 * 119.99594 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00111 * 179.97438 * 3 2 1 6 6 F 1.39899 * 110.91741 * 56.09639 * 5 3 2 7 7 C 1.55160 * 111.00324 * 179.97438 * 5 3 2 8 8 C 1.54328 * 103.10053 * 153.66440 * 7 5 3 9 9 N 1.47027 * 107.27008 * 337.71929 * 8 7 5 10 10 C 1.34779 * 125.64238 * 178.97712 * 9 8 7 11 11 O 1.21549 * 119.99514 * 174.84000 * 10 9 8 12 12 C 1.47881 * 120.00310 * 354.83548 * 10 9 8 13 13 C 1.39920 * 120.02660 * 7.91782 * 12 10 9 14 14 C 1.38330 * 120.35859 * 179.71365 * 13 12 10 15 15 C 1.37756 * 120.40975 * 0.56102 * 14 13 12 16 16 C 1.40747 * 120.03945 * 359.72053 * 15 14 13 17 17 C 1.41438 * 120.17610 * 180.02562 * 16 15 14 18 18 H 1.07992 * 119.99929 * 34.74895 * 17 16 15 19 19 C 1.39938 * 119.99793 * 214.76064 * 17 16 15 20 20 N 1.30833 * 119.99701 * 355.49780 * 19 17 16 21 21 Si 1.86794 * 120.00075 * 175.50742 * 19 17 16 22 22 H 1.48500 * 109.47180 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47434 * 119.99328 * 21 19 17 24 24 H 1.48504 * 109.47004 * 239.99492 * 21 19 17 25 25 C 1.38994 * 120.02622 * 188.18738 * 12 10 9 26 26 C 1.47423 * 108.70524 * 358.94248 * 9 8 7 27 27 H 1.08994 * 109.47734 * 300.00649 * 1 2 3 28 28 H 1.09006 * 109.47112 * 60.00423 * 1 2 3 29 29 H 1.09005 * 109.47541 * 179.97438 * 1 2 3 30 30 H 1.08997 * 110.71937 * 35.21422 * 7 5 3 31 31 H 1.08999 * 110.72056 * 272.11212 * 7 5 3 32 32 H 1.09001 * 109.87917 * 97.13337 * 8 7 5 33 33 H 1.08996 * 109.88184 * 218.14439 * 8 7 5 34 34 H 1.08001 * 119.81755 * 359.97438 * 13 12 10 35 35 H 1.07995 * 119.79537 * 180.25891 * 14 13 12 36 36 H 1.08000 * 119.97856 * 179.69697 * 15 14 13 37 37 H 0.97004 * 119.99524 * 180.02562 * 20 19 17 38 38 H 1.08003 * 120.19896 * 0.03334 * 25 12 10 39 39 H 1.08992 * 110.36858 * 142.97034 * 26 9 8 40 40 H 1.09005 * 110.36449 * 265.18142 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 9 4.1036 0.5728 -1.0837 7 6 4.0459 2.7504 -0.0002 8 6 5.4349 2.6671 0.6673 9 7 5.4627 1.4320 1.4644 10 6 6.5102 0.9865 2.1862 11 8 6.3911 -0.0017 2.8837 12 6 7.8043 1.7000 2.1293 13 6 7.8992 2.9260 1.4618 14 6 9.1049 3.6021 1.4094 15 6 10.2285 3.0710 2.0037 16 6 10.1537 1.8360 2.6746 17 6 11.3054 1.2883 3.2863 18 1 12.0360 1.9397 3.7425 19 6 11.4983 -0.0976 3.3000 20 7 10.5726 -0.8916 2.8261 21 14 13.0771 -0.8141 3.9951 22 1 13.9562 0.2872 4.4636 23 1 12.7546 -1.7096 5.1350 24 1 13.7760 -1.5894 2.9387 25 6 8.9286 1.1504 2.7342 26 6 4.1551 0.7621 1.3441 27 1 -0.3634 0.5139 0.8898 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 3.3727 3.3750 0.5870 31 1 4.1298 3.1281 -1.0192 32 1 6.2117 2.6330 -0.0966 33 1 5.5881 3.5316 1.3133 34 1 7.0253 3.3488 0.9884 35 1 9.1668 4.5498 0.8953 36 1 11.1674 3.6024 1.9543 37 1 10.7062 -1.8523 2.8360 38 1 8.8611 0.2020 3.2463 39 1 4.2845 -0.3197 1.3129 40 1 3.5075 1.0421 2.1750 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074496296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:27 Heat of formation + Delta-G solvation = -112.620792 kcal Electronic energy + Delta-G solvation = -26861.923228 eV Core-core repulsion = 22750.370453 eV Total energy + Delta-G solvation = -4111.552775 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.121 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.18182 -40.93022 -39.73703 -37.48197 -36.99229 -36.49506 -33.71239 -31.84480 -30.39044 -29.57253 -29.39578 -27.94042 -25.39672 -24.94649 -23.21540 -21.70424 -20.93640 -20.62774 -19.28768 -18.54359 -17.80160 -17.40144 -16.99078 -16.11146 -15.65636 -15.53076 -15.49997 -15.12545 -14.74054 -14.68906 -14.51301 -13.55350 -13.52387 -13.37861 -13.20177 -13.08374 -12.72555 -12.64735 -12.45668 -12.41669 -11.98889 -11.68681 -11.65740 -11.32553 -11.23247 -11.14817 -11.00089 -10.81983 -10.54945 -10.23663 -10.02608 -9.61134 -9.31652 -9.07487 -8.52192 -7.66959 -7.39988 -6.64511 -4.45561 1.52545 2.01315 2.13147 2.81258 3.09548 3.12262 3.15674 3.16516 3.55319 3.75913 3.85470 3.96611 4.08427 4.43655 4.68115 4.71218 4.73083 4.81193 4.97867 5.14435 5.26914 5.42515 5.45422 5.53571 5.59961 5.66352 5.81425 5.82529 6.04765 6.24159 6.36931 6.67719 6.96669 7.00838 7.13009 7.25798 7.37213 7.59994 7.70826 7.84390 8.00653 8.19270 8.51954 8.74034 8.83992 8.86808 10.26547 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.024216 B = 0.003022 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.987280 B = 9264.484428 C =10034.869843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.345 6.345 3 C 0.464 3.536 4 O -0.483 6.483 5 C 0.116 3.884 6 F -0.167 7.167 7 C -0.142 4.142 8 C 0.099 3.901 9 N -0.622 5.622 10 C 0.586 3.414 11 O -0.535 6.535 12 C -0.133 4.133 13 C -0.237 4.237 14 C -0.109 4.109 15 C -0.195 4.195 16 C 0.092 3.908 17 C -0.464 4.464 18 H 0.079 0.921 19 C 0.068 3.932 20 N -0.804 5.804 21 Si 0.917 3.083 22 H -0.262 1.262 23 H -0.273 1.273 24 H -0.274 1.274 25 C -0.079 4.079 26 C 0.101 3.899 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.126 0.874 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.281 0.719 38 H 0.144 0.856 39 H 0.103 0.897 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.788 3.803 -6.209 17.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.260 6.260 3 C 0.304 3.696 4 O -0.369 6.369 5 C 0.096 3.904 6 F -0.147 7.147 7 C -0.180 4.180 8 C -0.023 4.023 9 N -0.359 5.359 10 C 0.379 3.621 11 O -0.412 6.412 12 C -0.136 4.136 13 C -0.256 4.256 14 C -0.127 4.127 15 C -0.215 4.215 16 C 0.090 3.910 17 C -0.495 4.495 18 H 0.097 0.903 19 C -0.148 4.148 20 N -0.431 5.431 21 Si 0.742 3.258 22 H -0.186 1.186 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.099 4.099 26 C -0.023 4.023 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.144 0.856 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.162 0.838 39 H 0.121 0.879 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.025 3.239 -5.825 17.356 hybrid contribution 0.472 -0.421 -0.053 0.635 sum -15.553 2.818 -5.878 16.863 Atomic orbital electron populations 1.23401 0.75495 1.04327 1.02833 1.86584 1.24056 1.32302 1.83068 1.23483 0.90965 0.82163 0.73035 1.90702 1.66128 1.36189 1.43843 1.21878 0.85652 0.95413 0.87489 1.92988 1.86408 1.80117 1.55230 1.23413 0.97764 0.92011 1.04770 1.22642 0.95718 0.88440 0.95534 1.48275 1.12416 1.24305 1.50868 1.18673 0.82626 0.83423 0.77336 1.90726 1.83416 1.26962 1.40114 1.19404 0.91887 0.96811 1.05465 1.21725 0.98877 0.97168 1.07827 1.20511 0.93413 0.98304 1.00490 1.21313 0.96986 0.99799 1.03415 1.17655 0.92389 0.90738 0.90242 1.19548 1.05254 0.91693 1.32985 0.90286 1.25922 0.98194 0.97267 0.93404 1.69732 1.32469 1.05404 1.35463 0.86116 0.81286 0.79339 0.79073 1.18580 1.19879 1.19936 1.21940 0.89501 1.00808 0.97656 1.22588 0.86286 1.00519 0.92905 0.91434 0.91561 0.87538 0.87272 0.87714 0.88949 0.88910 0.85643 0.88761 0.88512 0.90807 0.83838 0.87905 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.34 -3.69 10.56 -39.26 -0.41 -4.11 16 3 C 0.46 5.40 7.07 36.00 0.25 5.65 16 4 O -0.48 -6.07 15.46 -18.75 -0.29 -6.36 16 5 C 0.12 1.41 1.60 -89.36 -0.14 1.27 16 6 F -0.17 -2.31 17.01 2.25 0.04 -2.28 16 7 C -0.14 -1.47 5.88 -24.89 -0.15 -1.61 16 8 C 0.10 1.28 4.87 -3.06 -0.01 1.26 16 9 N -0.62 -10.42 3.33 -175.76 -0.58 -11.00 16 10 C 0.59 12.79 7.81 -12.31 -0.10 12.69 16 11 O -0.54 -13.37 16.66 5.32 0.09 -13.28 16 12 C -0.13 -3.08 5.86 -105.04 -0.62 -3.70 16 13 C -0.24 -4.76 8.60 -38.92 -0.33 -5.09 16 14 C -0.11 -2.23 10.01 -39.72 -0.40 -2.63 16 15 C -0.20 -4.54 9.78 -38.81 -0.38 -4.92 16 16 C 0.09 2.41 5.55 -106.87 -0.59 1.82 16 17 C -0.46 -12.21 9.04 -37.73 -0.34 -12.55 16 18 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 19 C 0.07 1.74 5.42 -17.34 -0.09 1.64 16 20 N -0.80 -21.48 10.60 55.55 0.59 -20.89 16 21 Si 0.92 19.06 29.56 -169.99 -5.03 14.03 16 22 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 C -0.08 -2.09 8.21 -38.44 -0.32 -2.40 16 26 C 0.10 1.41 6.18 -2.27 -0.01 1.40 16 27 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 28 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 29 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.11 1.02 7.39 -51.93 -0.38 0.64 16 31 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.09 1.23 6.67 -51.93 -0.35 0.88 16 33 H 0.09 1.10 6.79 -51.93 -0.35 0.75 16 34 H 0.13 2.01 2.74 -58.25 -0.16 1.85 16 35 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 37 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 38 H 0.14 4.16 5.74 -52.48 -0.30 3.86 16 39 H 0.10 1.54 8.09 -51.93 -0.42 1.12 16 40 H 0.09 1.07 8.04 -51.93 -0.42 0.65 16 LS Contribution 341.22 15.07 5.14 5.14 Total: -1.00 -31.58 341.22 -7.08 -38.67 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -4.46 Total: 5.94 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -2.17 Total: -5.86 kcal Atomic # 7 Polarization: -31.90 SS G_CDS: 0.00 Total: -31.90 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.62 Total: -23.74 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.58 -7.08 -38.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074496296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.953 kcal (2) G-P(sol) polarization free energy of solvation -31.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds