Wall clock time and date at job start Sat Apr 11 2020 00:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 117.00261 * 2 1 4 4 O 1.20828 * 119.99594 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00111 * 179.97438 * 3 2 1 6 6 F 1.39899 * 110.91741 * 56.09639 * 5 3 2 7 7 C 1.55160 * 111.00324 * 179.97438 * 5 3 2 8 8 C 1.54328 * 103.10053 * 153.66440 * 7 5 3 9 9 N 1.47027 * 107.27008 * 337.71929 * 8 7 5 10 10 C 1.34779 * 125.64238 * 178.97712 * 9 8 7 11 11 O 1.21549 * 119.99514 * 174.84000 * 10 9 8 12 12 C 1.47881 * 120.00310 * 354.83548 * 10 9 8 13 13 C 1.39920 * 120.02660 * 7.91782 * 12 10 9 14 14 C 1.38330 * 120.35859 * 179.71365 * 13 12 10 15 15 C 1.37756 * 120.40975 * 0.56102 * 14 13 12 16 16 C 1.40747 * 120.03945 * 359.72053 * 15 14 13 17 17 C 1.41438 * 120.17610 * 180.02562 * 16 15 14 18 18 H 1.07992 * 119.99929 * 34.74895 * 17 16 15 19 19 C 1.39938 * 119.99793 * 214.76064 * 17 16 15 20 20 N 1.30833 * 119.99701 * 355.49780 * 19 17 16 21 21 Si 1.86794 * 120.00075 * 175.50742 * 19 17 16 22 22 H 1.48500 * 109.47180 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47434 * 119.99328 * 21 19 17 24 24 H 1.48504 * 109.47004 * 239.99492 * 21 19 17 25 25 C 1.38994 * 120.02622 * 188.18738 * 12 10 9 26 26 C 1.47423 * 108.70524 * 358.94248 * 9 8 7 27 27 H 1.08994 * 109.47734 * 300.00649 * 1 2 3 28 28 H 1.09006 * 109.47112 * 60.00423 * 1 2 3 29 29 H 1.09005 * 109.47541 * 179.97438 * 1 2 3 30 30 H 1.08997 * 110.71937 * 35.21422 * 7 5 3 31 31 H 1.08999 * 110.72056 * 272.11212 * 7 5 3 32 32 H 1.09001 * 109.87917 * 97.13337 * 8 7 5 33 33 H 1.08996 * 109.88184 * 218.14439 * 8 7 5 34 34 H 1.08001 * 119.81755 * 359.97438 * 13 12 10 35 35 H 1.07995 * 119.79537 * 180.25891 * 14 13 12 36 36 H 1.08000 * 119.97856 * 179.69697 * 15 14 13 37 37 H 0.97004 * 119.99524 * 180.02562 * 20 19 17 38 38 H 1.08003 * 120.19896 * 0.03334 * 25 12 10 39 39 H 1.08992 * 110.36858 * 142.97034 * 26 9 8 40 40 H 1.09005 * 110.36449 * 265.18142 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 9 4.1036 0.5728 -1.0837 7 6 4.0459 2.7504 -0.0002 8 6 5.4349 2.6671 0.6673 9 7 5.4627 1.4320 1.4644 10 6 6.5102 0.9865 2.1862 11 8 6.3911 -0.0017 2.8837 12 6 7.8043 1.7000 2.1293 13 6 7.8992 2.9260 1.4618 14 6 9.1049 3.6021 1.4094 15 6 10.2285 3.0710 2.0037 16 6 10.1537 1.8360 2.6746 17 6 11.3054 1.2883 3.2863 18 1 12.0360 1.9397 3.7425 19 6 11.4983 -0.0976 3.3000 20 7 10.5726 -0.8916 2.8261 21 14 13.0771 -0.8141 3.9951 22 1 13.9562 0.2872 4.4636 23 1 12.7546 -1.7096 5.1350 24 1 13.7760 -1.5894 2.9387 25 6 8.9286 1.1504 2.7342 26 6 4.1551 0.7621 1.3441 27 1 -0.3634 0.5139 0.8898 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 3.3727 3.3750 0.5870 31 1 4.1298 3.1281 -1.0192 32 1 6.2117 2.6330 -0.0966 33 1 5.5881 3.5316 1.3133 34 1 7.0253 3.3488 0.9884 35 1 9.1668 4.5498 0.8953 36 1 11.1674 3.6024 1.9543 37 1 10.7062 -1.8523 2.8360 38 1 8.8611 0.2020 3.2463 39 1 4.2845 -0.3197 1.3129 40 1 3.5075 1.0421 2.1750 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074496296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:26 Heat of formation + Delta-G solvation = -131.618000 kcal Electronic energy + Delta-G solvation = -26862.747009 eV Core-core repulsion = 22750.370453 eV Total energy + Delta-G solvation = -4112.376556 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.121 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.21497 -41.85471 -41.18845 -38.98092 -38.35572 -37.65837 -35.54254 -33.22360 -31.84203 -31.25339 -30.70203 -28.73430 -27.17271 -26.26123 -24.27585 -23.28045 -22.58489 -21.63669 -20.82593 -19.54107 -19.38083 -18.33066 -18.07772 -17.53347 -17.28929 -16.76702 -16.71919 -16.50195 -16.14480 -16.11056 -15.53979 -15.00279 -14.80047 -14.77152 -14.41883 -14.29465 -14.14551 -13.97580 -13.91523 -13.50969 -13.32400 -13.06225 -12.83749 -12.66224 -12.63489 -12.34602 -12.31490 -11.95317 -11.92816 -11.87215 -11.69660 -11.28466 -11.14452 -10.79527 -9.92867 -9.45118 -9.23688 -8.50812 -6.42482 0.34006 0.62047 1.03502 1.16646 1.37476 1.45846 1.53536 1.85331 2.02280 2.22655 2.58505 2.82462 2.87897 3.19400 3.51719 3.65831 3.73627 3.81838 4.03616 4.21094 4.30014 4.35706 4.42432 4.46163 4.54504 4.65105 4.67753 4.70224 4.88958 4.89417 5.04012 5.09054 5.13867 5.23324 5.37618 5.55013 5.83477 5.93280 6.10933 6.25830 6.29555 6.33764 6.63444 6.92735 6.97352 7.10468 8.41477 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.024216 B = 0.003022 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.987280 B = 9264.484428 C =10034.869843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.357 6.357 3 C 0.471 3.529 4 O -0.490 6.490 5 C 0.118 3.882 6 F -0.179 7.179 7 C -0.126 4.126 8 C 0.084 3.916 9 N -0.616 5.616 10 C 0.579 3.421 11 O -0.583 6.583 12 C -0.145 4.145 13 C -0.213 4.213 14 C -0.106 4.106 15 C -0.198 4.198 16 C 0.057 3.943 17 C -0.500 4.500 18 H 0.081 0.919 19 C 0.021 3.979 20 N -0.847 5.847 21 Si 0.990 3.010 22 H -0.252 1.252 23 H -0.271 1.271 24 H -0.268 1.268 25 C -0.118 4.118 26 C 0.095 3.905 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.176 0.824 35 H 0.144 0.856 36 H 0.110 0.890 37 H 0.281 0.719 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.282 6.333 -7.870 20.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.273 6.273 3 C 0.310 3.690 4 O -0.377 6.377 5 C 0.097 3.903 6 F -0.159 7.159 7 C -0.164 4.164 8 C -0.036 4.036 9 N -0.350 5.350 10 C 0.372 3.628 11 O -0.464 6.464 12 C -0.148 4.148 13 C -0.231 4.231 14 C -0.124 4.124 15 C -0.218 4.218 16 C 0.055 3.945 17 C -0.531 4.531 18 H 0.099 0.901 19 C -0.191 4.191 20 N -0.475 5.475 21 Si 0.811 3.189 22 H -0.176 1.176 23 H -0.196 1.196 24 H -0.193 1.193 25 C -0.139 4.139 26 C -0.029 4.029 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.150 0.850 30 H 0.145 0.855 31 H 0.149 0.851 32 H 0.114 0.886 33 H 0.132 0.868 34 H 0.192 0.808 35 H 0.162 0.838 36 H 0.128 0.872 37 H 0.091 0.909 38 H 0.123 0.877 39 H 0.104 0.896 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.563 5.815 -7.527 19.973 hybrid contribution 0.691 -1.092 0.352 1.339 sum -16.872 4.723 -7.175 18.933 Atomic orbital electron populations 1.23739 0.73372 1.06288 1.03397 1.86572 1.26173 1.31860 1.82649 1.23200 0.90507 0.82345 0.72900 1.90700 1.66164 1.36418 1.44442 1.21916 0.86237 0.96359 0.85768 1.92969 1.86672 1.80602 1.55651 1.23429 0.95914 0.90703 1.06304 1.22937 0.97911 0.87159 0.95630 1.48151 1.12028 1.25430 1.49360 1.18517 0.83475 0.82937 0.77829 1.90690 1.84312 1.28943 1.42490 1.19692 0.91783 0.98101 1.05264 1.22395 1.00704 0.95069 1.04911 1.21052 0.92209 0.99818 0.99286 1.21623 0.98873 0.98567 1.02727 1.17993 0.92371 0.92419 0.91730 1.19819 1.05959 0.92599 1.34753 0.90134 1.26848 1.01431 0.97382 0.93405 1.69891 1.34550 1.05504 1.37518 0.85038 0.77045 0.78554 0.78291 1.17558 1.19645 1.19256 1.21693 0.91370 1.00544 1.00265 1.22756 0.85320 0.99628 0.95171 0.90892 0.90966 0.85046 0.85468 0.85120 0.88628 0.86779 0.80762 0.83789 0.87168 0.90861 0.87713 0.89642 0.87605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.56 113.37 1.20 1.48 16 2 O -0.36 -6.98 10.56 -51.42 -0.54 -7.52 16 3 C 0.47 9.79 7.07 71.23 0.50 10.29 16 4 O -0.49 -10.81 15.46 21.96 0.34 -10.47 16 5 C 0.12 2.58 1.60 -9.98 -0.02 2.56 16 6 F -0.18 -4.63 17.01 44.97 0.77 -3.86 16 7 C -0.13 -2.06 5.88 31.79 0.19 -1.88 16 8 C 0.08 1.85 4.87 86.73 0.42 2.27 16 9 N -0.62 -19.84 3.33 -828.25 -2.76 -22.60 16 10 C 0.58 25.84 7.81 86.80 0.68 26.52 16 11 O -0.58 -30.87 16.66 -3.87 -0.06 -30.93 16 12 C -0.15 -6.84 5.86 -20.14 -0.12 -6.96 16 13 C -0.21 -7.94 8.60 22.70 0.20 -7.74 16 14 C -0.11 -3.98 10.01 22.18 0.22 -3.76 16 15 C -0.20 -9.06 9.78 22.77 0.22 -8.84 16 16 C 0.06 3.09 5.55 -21.32 -0.12 2.98 16 17 C -0.50 -27.60 9.04 23.47 0.21 -27.39 16 18 H 0.08 4.20 7.85 -2.91 -0.02 4.18 16 19 C 0.02 1.10 5.42 85.25 0.46 1.56 16 20 N -0.85 -48.42 10.60 21.83 0.23 -48.19 16 21 Si 0.99 40.69 29.56 68.60 2.03 42.72 16 22 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 23 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 24 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 25 C -0.12 -6.61 8.21 23.01 0.19 -6.42 16 26 C 0.09 2.54 6.18 87.02 0.54 3.08 16 27 H 0.07 0.78 8.13 -2.39 -0.02 0.76 16 28 H 0.07 0.77 8.13 -2.38 -0.02 0.75 16 29 H 0.13 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.13 1.73 7.39 -2.39 -0.02 1.71 16 31 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.10 2.11 6.67 -2.39 -0.02 2.09 16 33 H 0.11 2.10 6.79 -2.39 -0.02 2.08 16 34 H 0.18 4.72 2.74 -8.32 -0.02 4.70 16 35 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 36 H 0.11 4.63 8.06 -2.91 -0.02 4.60 16 37 H 0.28 14.87 8.30 -92.71 -0.77 14.10 16 38 H 0.10 6.64 5.74 -2.91 -0.02 6.62 16 39 H 0.09 2.61 8.09 -2.39 -0.02 2.59 16 40 H 0.11 2.46 8.04 -2.38 -0.02 2.44 16 Total: -1.00 -75.13 341.22 5.85 -69.27 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 1.08 Total: 23.82 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: 4.78 Total: -12.24 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -2.52 Total: -70.79 kcal Atomic # 8 Polarization: -48.65 SS G_CDS: -0.27 Total: -48.92 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.77 Total: -3.86 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -75.13 5.85 -69.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074496296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.346 kcal (2) G-P(sol) polarization free energy of solvation -75.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds