Wall clock time and date at job start Sat Apr 11 2020 00:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00077 * 2 1 4 4 H 1.08998 * 109.49847 * 329.99548 * 3 2 1 5 5 C 1.53040 * 109.49724 * 209.93479 * 3 2 1 6 6 C 1.53038 * 109.54059 * 178.65233 * 5 3 2 7 7 C 1.53190 * 109.31599 * 61.35856 * 6 5 3 8 8 N 1.46927 * 108.77850 * 305.37086 * 7 6 5 9 9 C 1.34768 * 120.63038 * 233.60698 * 8 7 6 10 10 O 1.21609 * 120.00528 * 356.04802 * 9 8 7 11 11 C 1.47429 * 119.99896 * 176.05343 * 9 8 7 12 12 C 1.39681 * 120.21709 * 54.03192 * 11 9 8 13 13 C 1.37807 * 119.94325 * 180.02562 * 12 11 9 14 14 C 1.38662 * 120.37749 * 0.02562 * 13 12 11 15 15 C 1.37916 * 120.43917 * 359.97438 * 14 13 12 16 16 C 1.39118 * 120.04730 * 359.71687 * 15 14 13 17 17 S 1.76201 * 120.18757 * 180.27740 * 16 15 14 18 18 C 1.76203 * 100.00039 * 7.79795 * 17 16 15 19 19 H 1.08004 * 120.00199 * 355.59598 * 18 17 16 20 20 C 1.38801 * 120.00123 * 175.60173 * 18 17 16 21 21 N 1.31553 * 120.00221 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00029 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47025 * 90.00223 * 22 20 18 24 24 H 1.48499 * 109.47299 * 210.00210 * 22 20 18 25 25 H 1.48507 * 109.47001 * 330.00242 * 22 20 18 26 26 C 1.46928 * 118.73447 * 53.60234 * 8 7 6 27 27 H 1.09005 * 109.47074 * 60.00160 * 1 2 3 28 28 H 1.08997 * 109.47468 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46968 * 300.00586 * 1 2 3 30 30 H 1.08999 * 109.45682 * 298.67075 * 5 3 2 31 31 H 1.09001 * 109.46138 * 58.62973 * 5 3 2 32 32 H 1.08998 * 109.49946 * 181.31961 * 6 5 3 33 33 H 1.09003 * 109.49714 * 301.41239 * 6 5 3 34 34 H 1.09000 * 109.58232 * 65.15614 * 7 6 5 35 35 H 1.08992 * 109.59195 * 185.57934 * 7 6 5 36 36 H 1.08004 * 120.02810 * 359.97423 * 12 11 9 37 37 H 1.07999 * 119.81031 * 179.97438 * 13 12 11 38 38 H 1.07994 * 119.77921 * 180.02562 * 14 13 12 39 39 H 1.07994 * 119.97520 * 180.02562 * 15 14 13 40 40 H 0.97001 * 120.00475 * 180.02562 * 21 20 18 41 41 H 1.09010 * 109.58224 * 186.60467 * 26 8 7 42 42 H 1.08997 * 109.58821 * 66.18459 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3454 1.9997 -0.5138 5 6 3.3601 1.2635 -0.7199 6 6 3.9680 2.6677 -0.7499 7 6 4.2002 3.1501 0.6853 8 7 2.9351 3.0560 1.4265 9 6 2.4396 4.1267 2.0779 10 8 3.0750 5.1628 2.1164 11 6 1.1271 4.0418 2.7441 12 6 0.8742 3.0295 3.6727 13 6 -0.3548 2.9551 4.2916 14 6 -1.3449 3.8804 3.9979 15 6 -1.1122 4.8864 3.0837 16 6 0.1241 4.9821 2.4530 17 16 0.4280 6.2702 1.2897 18 6 -1.0365 7.2267 1.5029 19 1 -1.8178 6.8783 2.1621 20 6 -1.1860 8.4278 0.8235 21 7 -2.2791 9.1421 0.9830 22 14 0.1656 9.0306 -0.3163 23 1 -0.0745 8.5116 -1.6868 24 1 0.1656 10.5154 -0.3423 25 1 1.4803 8.5441 0.1740 26 6 2.2204 1.7724 1.4438 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 4.0327 0.5879 -0.1914 31 1 3.2166 0.9080 -1.7403 32 1 4.9182 2.6414 -1.2832 33 1 3.2847 3.3492 -1.2567 34 1 4.9519 2.5229 1.1645 35 1 4.5399 4.1857 0.6724 36 1 1.6409 2.3051 3.9047 37 1 -0.5481 2.1712 5.0089 38 1 -2.3044 3.8133 4.4890 39 1 -1.8885 5.6032 2.8609 40 1 -2.3838 9.9813 0.5079 41 1 1.2536 1.8990 1.9312 42 1 2.8106 1.0328 1.9848 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076246529.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:31 Heat of formation + Delta-G solvation = -49.619389 kcal Electronic energy + Delta-G solvation = -25378.697076 eV Core-core repulsion = 21836.089423 eV Total energy + Delta-G solvation = -3542.607653 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.35548 -38.59285 -37.68653 -36.17602 -32.96847 -32.75449 -30.92768 -30.53522 -30.00966 -26.66952 -26.03718 -25.67055 -23.42292 -22.63579 -22.10284 -20.91383 -19.40283 -18.06155 -17.18920 -16.46646 -16.34106 -16.09502 -15.51674 -15.32214 -15.18154 -14.84177 -14.64805 -14.04088 -13.95870 -13.59479 -13.44459 -13.13605 -13.01532 -12.73195 -12.59111 -12.26387 -12.00671 -11.98402 -11.48880 -11.30006 -11.25950 -11.17055 -11.05288 -10.96834 -10.71132 -10.59654 -10.01130 -9.81578 -9.53694 -9.52184 -8.92915 -8.76129 -8.52874 -8.37668 -6.89018 -6.53682 -4.28038 1.48430 1.81692 2.76617 2.93295 3.13082 3.16025 3.31337 3.37454 3.64791 4.08118 4.17140 4.49434 4.61154 4.67624 4.81472 4.87196 4.88388 5.05930 5.09033 5.21942 5.26518 5.29894 5.36341 5.44882 5.51826 5.59515 5.62243 5.71603 5.73760 5.76315 5.84537 5.98232 6.00700 6.12288 6.16535 6.40715 6.56828 6.70642 6.87119 6.97859 7.03707 7.36081 7.53196 7.69364 8.26722 8.46843 8.88509 10.53180 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.012428 B = 0.005016 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.347578 B = 5581.157667 C = 6437.704108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.383 6.383 3 C 0.073 3.927 4 H 0.069 0.931 5 C -0.114 4.114 6 C -0.133 4.133 7 C 0.110 3.890 8 N -0.609 5.609 9 C 0.571 3.429 10 O -0.514 6.514 11 C -0.157 4.157 12 C -0.075 4.075 13 C -0.169 4.169 14 C -0.081 4.081 15 C -0.141 4.141 16 C -0.023 4.023 17 S 0.004 5.996 18 C -0.550 4.550 19 H 0.110 0.890 20 C 0.104 3.896 21 N -0.862 5.862 22 Si 0.846 3.154 23 H -0.264 1.264 24 H -0.267 1.267 25 H -0.232 1.232 26 C 0.083 3.917 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.147 0.853 40 H 0.276 0.724 41 H 0.099 0.901 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.523 -17.574 -0.939 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.301 6.301 3 C 0.015 3.985 4 H 0.087 0.913 5 C -0.152 4.152 6 C -0.172 4.172 7 C -0.012 4.012 8 N -0.346 5.346 9 C 0.359 3.641 10 O -0.389 6.389 11 C -0.170 4.170 12 C -0.095 4.095 13 C -0.192 4.192 14 C -0.102 4.102 15 C -0.166 4.166 16 C -0.141 4.141 17 S 0.261 5.739 18 C -0.697 4.697 19 H 0.128 0.872 20 C -0.108 4.108 21 N -0.495 5.495 22 Si 0.670 3.330 23 H -0.189 1.189 24 H -0.191 1.191 25 H -0.156 1.156 26 C -0.041 4.041 27 H 0.062 0.938 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.164 0.836 40 H 0.086 0.914 41 H 0.117 0.883 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.810 -16.512 -1.922 18.814 hybrid contribution -1.040 0.360 0.369 1.161 sum 7.770 -16.152 -1.553 17.991 Atomic orbital electron populations 1.22844 0.80725 1.02646 1.00658 1.87866 1.19963 1.27226 1.95046 1.22504 0.95538 0.84805 0.95686 0.91325 1.21576 0.95219 0.97398 1.00982 1.21924 1.01857 0.96279 0.97098 1.21590 0.85289 1.03456 0.90864 1.47932 1.23527 1.10729 1.52373 1.18335 0.85331 0.82521 0.77874 1.90800 1.59646 1.28846 1.59642 1.19200 0.93703 0.99956 1.04108 1.20919 0.96927 0.95995 0.95632 1.20763 0.94066 1.01290 1.03081 1.21139 0.98557 0.94106 0.96387 1.21566 0.97136 0.99818 0.98048 1.22256 0.94918 0.97777 0.99116 1.83368 1.28028 1.20555 1.41923 1.22917 1.03603 1.08827 1.34305 0.87245 1.24763 0.95682 0.94892 0.95429 1.69878 1.25623 1.13760 1.40257 0.86920 0.84155 0.79997 0.81976 1.18906 1.19126 1.15561 1.22358 0.99126 0.85106 0.97514 0.93829 0.89619 0.93529 0.90987 0.91060 0.90049 0.90996 0.91592 0.88599 0.86477 0.86544 0.86453 0.83559 0.91393 0.88291 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.36 16 2 O -0.38 -4.41 10.35 -35.23 -0.36 -4.78 16 3 C 0.07 0.86 2.76 -26.61 -0.07 0.78 16 4 H 0.07 0.89 7.79 -51.93 -0.40 0.48 16 5 C -0.11 -1.14 5.54 -26.69 -0.15 -1.28 16 6 C -0.13 -1.37 6.08 -26.61 -0.16 -1.54 16 7 C 0.11 1.36 6.42 -3.71 -0.02 1.34 16 8 N -0.61 -8.96 2.97 -174.04 -0.52 -9.48 16 9 C 0.57 10.78 6.57 -12.52 -0.08 10.70 16 10 O -0.51 -11.51 15.45 5.27 0.08 -11.43 16 11 C -0.16 -2.97 4.90 -104.75 -0.51 -3.48 16 12 C -0.07 -1.15 7.42 -39.20 -0.29 -1.44 16 13 C -0.17 -2.44 10.02 -39.58 -0.40 -2.83 16 14 C -0.08 -1.31 10.03 -39.54 -0.40 -1.71 16 15 C -0.14 -2.85 9.25 -39.37 -0.36 -3.21 16 16 C -0.02 -0.51 6.14 -38.39 -0.24 -0.74 16 17 S 0.00 0.09 17.87 -107.50 -1.92 -1.83 16 18 C -0.55 -15.19 9.62 30.94 0.30 -14.89 16 19 H 0.11 3.10 5.08 -52.48 -0.27 2.83 16 20 C 0.10 2.89 5.50 -17.46 -0.10 2.79 16 21 N -0.86 -24.74 13.96 55.49 0.77 -23.96 16 22 Si 0.85 20.56 27.74 -169.99 -4.71 15.84 16 23 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.23 -5.69 6.74 56.52 0.38 -5.31 16 26 C 0.08 1.02 5.14 -3.71 -0.02 1.00 16 27 H 0.04 0.41 8.09 -51.93 -0.42 -0.01 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.46 8.03 -51.93 -0.42 0.04 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 1.35 7.03 -51.93 -0.36 0.99 16 36 H 0.12 1.49 7.36 -52.48 -0.39 1.11 16 37 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.15 3.22 4.98 -52.49 -0.26 2.96 16 40 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.10 1.29 4.62 -51.92 -0.24 1.05 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 349.89 15.07 5.27 5.27 Total: -1.00 -31.50 349.89 -8.52 -40.02 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -5.72 Total: 3.51 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -1.41 Total: -13.15 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 0.26 Total: -33.45 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.28 Total: -16.21 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.71 Total: 15.84 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -1.92 Total: -1.83 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.50 -8.52 -40.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076246529.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.600 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds