Wall clock time and date at job start Sat Apr 11 2020 00:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00077 * 2 1 4 4 H 1.08998 * 109.49847 * 329.99548 * 3 2 1 5 5 C 1.53040 * 109.49724 * 209.93479 * 3 2 1 6 6 C 1.53038 * 109.54059 * 178.65233 * 5 3 2 7 7 C 1.53190 * 109.31599 * 61.35856 * 6 5 3 8 8 N 1.46927 * 108.77850 * 305.37086 * 7 6 5 9 9 C 1.34768 * 120.63038 * 233.60698 * 8 7 6 10 10 O 1.21609 * 120.00528 * 356.04802 * 9 8 7 11 11 C 1.47429 * 119.99896 * 176.05343 * 9 8 7 12 12 C 1.39681 * 120.21709 * 54.03192 * 11 9 8 13 13 C 1.37807 * 119.94325 * 180.02562 * 12 11 9 14 14 C 1.38662 * 120.37749 * 0.02562 * 13 12 11 15 15 C 1.37916 * 120.43917 * 359.97438 * 14 13 12 16 16 C 1.39118 * 120.04730 * 359.71687 * 15 14 13 17 17 S 1.76201 * 120.18757 * 180.27740 * 16 15 14 18 18 C 1.76203 * 100.00039 * 7.79795 * 17 16 15 19 19 H 1.08004 * 120.00199 * 355.59598 * 18 17 16 20 20 C 1.38801 * 120.00123 * 175.60173 * 18 17 16 21 21 N 1.31553 * 120.00221 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00029 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47025 * 90.00223 * 22 20 18 24 24 H 1.48499 * 109.47299 * 210.00210 * 22 20 18 25 25 H 1.48507 * 109.47001 * 330.00242 * 22 20 18 26 26 C 1.46928 * 118.73447 * 53.60234 * 8 7 6 27 27 H 1.09005 * 109.47074 * 60.00160 * 1 2 3 28 28 H 1.08997 * 109.47468 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46968 * 300.00586 * 1 2 3 30 30 H 1.08999 * 109.45682 * 298.67075 * 5 3 2 31 31 H 1.09001 * 109.46138 * 58.62973 * 5 3 2 32 32 H 1.08998 * 109.49946 * 181.31961 * 6 5 3 33 33 H 1.09003 * 109.49714 * 301.41239 * 6 5 3 34 34 H 1.09000 * 109.58232 * 65.15614 * 7 6 5 35 35 H 1.08992 * 109.59195 * 185.57934 * 7 6 5 36 36 H 1.08004 * 120.02810 * 359.97423 * 12 11 9 37 37 H 1.07999 * 119.81031 * 179.97438 * 13 12 11 38 38 H 1.07994 * 119.77921 * 180.02562 * 14 13 12 39 39 H 1.07994 * 119.97520 * 180.02562 * 15 14 13 40 40 H 0.97001 * 120.00475 * 180.02562 * 21 20 18 41 41 H 1.09010 * 109.58224 * 186.60467 * 26 8 7 42 42 H 1.08997 * 109.58821 * 66.18459 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3454 1.9997 -0.5138 5 6 3.3601 1.2635 -0.7199 6 6 3.9680 2.6677 -0.7499 7 6 4.2002 3.1501 0.6853 8 7 2.9351 3.0560 1.4265 9 6 2.4396 4.1267 2.0779 10 8 3.0750 5.1628 2.1164 11 6 1.1271 4.0418 2.7441 12 6 0.8742 3.0295 3.6727 13 6 -0.3548 2.9551 4.2916 14 6 -1.3449 3.8804 3.9979 15 6 -1.1122 4.8864 3.0837 16 6 0.1241 4.9821 2.4530 17 16 0.4280 6.2702 1.2897 18 6 -1.0365 7.2267 1.5029 19 1 -1.8178 6.8783 2.1621 20 6 -1.1860 8.4278 0.8235 21 7 -2.2791 9.1421 0.9830 22 14 0.1656 9.0306 -0.3163 23 1 -0.0745 8.5116 -1.6868 24 1 0.1656 10.5154 -0.3423 25 1 1.4803 8.5441 0.1740 26 6 2.2204 1.7724 1.4438 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 4.0327 0.5879 -0.1914 31 1 3.2166 0.9080 -1.7403 32 1 4.9182 2.6414 -1.2832 33 1 3.2847 3.3492 -1.2567 34 1 4.9519 2.5229 1.1645 35 1 4.5399 4.1857 0.6724 36 1 1.6409 2.3051 3.9047 37 1 -0.5481 2.1712 5.0089 38 1 -2.3044 3.8133 4.4890 39 1 -1.8885 5.6032 2.8609 40 1 -2.3838 9.9813 0.5079 41 1 1.2536 1.8990 1.9312 42 1 2.8106 1.0328 1.9848 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076246529.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:30 Heat of formation + Delta-G solvation = -69.654649 kcal Electronic energy + Delta-G solvation = -25379.565870 eV Core-core repulsion = 21836.089423 eV Total energy + Delta-G solvation = -3543.476447 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.61006 -39.71977 -39.01329 -37.28154 -34.88484 -34.06644 -32.15349 -31.97216 -31.09735 -28.08373 -27.48734 -26.82903 -24.58007 -23.85539 -23.40206 -22.05049 -20.73328 -19.71828 -18.54036 -17.88174 -17.46424 -17.27409 -17.23427 -16.62358 -16.20047 -16.12165 -15.93062 -15.23131 -15.21770 -15.14810 -14.71703 -14.39845 -14.21577 -13.89830 -13.84754 -13.71315 -13.57988 -13.15799 -13.05247 -12.88548 -12.72961 -12.34221 -12.22443 -12.08290 -11.89012 -11.62827 -11.57315 -11.40389 -11.24898 -10.83332 -10.63414 -10.50317 -9.87779 -9.60796 -8.75010 -8.63626 -6.37693 0.05441 0.39014 0.94888 1.17976 1.35860 1.52355 1.59083 1.92941 2.10279 2.50170 2.69620 2.75888 2.82510 3.53852 3.69617 3.82016 3.93858 3.97368 4.09752 4.17851 4.18924 4.40407 4.47261 4.51286 4.52829 4.54411 4.64590 4.69529 4.73670 4.83265 4.85631 4.91294 4.94938 5.00764 5.13374 5.27259 5.33630 5.40232 5.50731 5.56147 5.62045 5.98420 6.12030 6.13932 6.27664 6.77766 7.08761 8.46586 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.012428 B = 0.005016 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.347578 B = 5581.157667 C = 6437.704108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.386 6.386 3 C 0.074 3.926 4 H 0.046 0.954 5 C -0.108 4.108 6 C -0.126 4.126 7 C 0.104 3.896 8 N -0.600 5.600 9 C 0.562 3.438 10 O -0.562 6.562 11 C -0.159 4.159 12 C -0.067 4.067 13 C -0.137 4.137 14 C -0.076 4.076 15 C -0.161 4.161 16 C -0.049 4.049 17 S -0.050 6.050 18 C -0.556 4.556 19 H 0.088 0.912 20 C 0.056 3.944 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.255 1.255 24 H -0.251 1.251 25 H -0.241 1.241 26 C 0.081 3.919 27 H 0.039 0.961 28 H 0.108 0.892 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.048 0.952 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.156 0.844 37 H 0.170 0.830 38 H 0.150 0.850 39 H 0.116 0.884 40 H 0.281 0.719 41 H 0.092 0.908 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.955 -21.679 0.125 23.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.304 6.304 3 C 0.015 3.985 4 H 0.064 0.936 5 C -0.146 4.146 6 C -0.164 4.164 7 C -0.017 4.017 8 N -0.334 5.334 9 C 0.351 3.649 10 O -0.441 6.441 11 C -0.171 4.171 12 C -0.087 4.087 13 C -0.158 4.158 14 C -0.096 4.096 15 C -0.186 4.186 16 C -0.165 4.165 17 S 0.203 5.797 18 C -0.703 4.703 19 H 0.105 0.895 20 C -0.151 4.151 21 N -0.538 5.538 22 Si 0.722 3.278 23 H -0.180 1.180 24 H -0.175 1.175 25 H -0.165 1.165 26 C -0.042 4.042 27 H 0.057 0.943 28 H 0.126 0.874 29 H 0.062 0.938 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.066 0.934 34 H 0.115 0.885 35 H 0.090 0.910 36 H 0.174 0.826 37 H 0.188 0.812 38 H 0.168 0.832 39 H 0.134 0.866 40 H 0.091 0.909 41 H 0.110 0.890 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.232 -20.721 -0.834 23.124 hybrid contribution -1.507 1.278 0.235 1.990 sum 8.725 -19.443 -0.599 21.319 Atomic orbital electron populations 1.22989 0.79920 1.04055 1.00376 1.87860 1.20847 1.26689 1.95014 1.22453 0.96175 0.84635 0.95187 0.93584 1.21561 0.94351 0.97122 1.01556 1.21892 1.02841 0.96060 0.95655 1.21826 0.84810 1.02917 0.92191 1.47989 1.24030 1.10512 1.50874 1.18455 0.85237 0.82884 0.78319 1.90776 1.60850 1.30742 1.61700 1.19478 0.93107 0.99916 1.04554 1.21392 0.98435 0.95154 0.93692 1.21381 0.92330 1.00579 1.01557 1.21519 1.00671 0.92684 0.94707 1.21477 0.96099 1.01100 0.99923 1.22204 0.96679 0.97713 0.99913 1.83204 1.27414 1.23225 1.45866 1.23020 1.04161 1.09374 1.33735 0.89462 1.25514 0.97618 0.95109 0.96856 1.69949 1.27287 1.14592 1.41970 0.86102 0.81180 0.80117 0.80424 1.17968 1.17519 1.16537 1.22537 0.99017 0.84223 0.98388 0.94262 0.87370 0.93754 0.89181 0.90208 0.87179 0.93356 0.88488 0.91025 0.82642 0.81237 0.83187 0.86608 0.90927 0.89000 0.88010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.82 113.37 1.23 1.61 16 2 O -0.39 -7.76 10.35 -148.98 -1.54 -9.30 16 3 C 0.07 1.57 2.76 30.67 0.08 1.65 16 4 H 0.05 1.18 7.79 -2.39 -0.02 1.16 16 5 C -0.11 -1.83 5.54 30.62 0.17 -1.66 16 6 C -0.13 -2.37 6.08 30.67 0.19 -2.18 16 7 C 0.10 2.40 6.42 86.36 0.55 2.96 16 8 N -0.60 -16.74 2.97 -822.79 -2.45 -19.19 16 9 C 0.56 21.19 6.57 86.67 0.57 21.76 16 10 O -0.56 -25.97 15.45 -4.06 -0.06 -26.04 16 11 C -0.16 -5.90 4.90 -19.95 -0.10 -5.99 16 12 C -0.07 -1.79 7.42 22.52 0.17 -1.63 16 13 C -0.14 -3.23 10.02 22.27 0.22 -3.01 16 14 C -0.08 -2.25 10.03 22.29 0.22 -2.02 16 15 C -0.16 -6.68 9.25 22.40 0.21 -6.47 16 16 C -0.05 -2.21 6.14 23.04 0.14 -2.07 16 17 S -0.05 -2.65 17.87 -56.49 -1.01 -3.66 16 18 C -0.56 -32.81 9.62 67.95 0.65 -32.15 16 19 H 0.09 5.37 5.08 -2.91 -0.01 5.36 16 20 C 0.06 3.30 5.50 84.87 0.47 3.77 16 21 N -0.90 -54.33 13.96 21.64 0.30 -54.03 16 22 Si 0.90 44.49 27.74 68.60 1.90 46.39 16 23 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 24 H -0.25 -11.59 7.11 99.48 0.71 -10.88 16 25 H -0.24 -12.19 6.74 99.48 0.67 -11.52 16 26 C 0.08 1.75 5.14 86.36 0.44 2.19 16 27 H 0.04 0.70 8.09 -2.38 -0.02 0.68 16 28 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.04 0.77 8.03 -2.39 -0.02 0.75 16 30 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.11 1.46 8.14 -2.39 -0.02 1.45 16 33 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 2.04 7.03 -2.39 -0.02 2.02 16 36 H 0.16 3.05 7.36 -2.91 -0.02 3.03 16 37 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 38 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 39 H 0.12 5.50 4.98 -2.91 -0.01 5.48 16 40 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 41 H 0.09 2.11 4.62 -2.38 -0.01 2.09 16 42 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -75.27 349.89 3.36 -71.91 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 1.00 Total: 17.15 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: 5.22 Total: -23.25 kcal Atomic # 7 Polarization: -71.07 SS G_CDS: -2.14 Total: -73.21 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -1.61 Total: -35.33 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.90 Total: 46.39 kcal Atomic # 16 Polarization: -2.65 SS G_CDS: -1.01 Total: -3.66 kcal Total: -75.27 3.36 -71.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076246529.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.260 kcal (2) G-P(sol) polarization free energy of solvation -75.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds