Wall clock time and date at job start Sat Apr 11 2020 00:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42907 * 113.99957 * 2 1 4 4 H 1.09001 * 109.52083 * 29.91844 * 3 2 1 5 5 C 1.53032 * 109.49785 * 149.99793 * 3 2 1 6 6 C 1.53040 * 109.54201 * 181.31843 * 5 3 2 7 7 C 1.53189 * 109.30935 * 298.63759 * 6 5 3 8 8 N 1.46935 * 108.89586 * 54.56177 * 7 6 5 9 9 C 1.34770 * 120.63172 * 126.46071 * 8 7 6 10 10 O 1.21605 * 120.00085 * 176.17444 * 9 8 7 11 11 C 1.47428 * 120.00286 * 356.17135 * 9 8 7 12 12 C 1.39682 * 120.21594 * 34.83143 * 11 9 8 13 13 C 1.37801 * 119.94142 * 179.97438 * 12 11 9 14 14 C 1.38661 * 120.38351 * 359.97438 * 13 12 11 15 15 C 1.37916 * 120.43326 * 0.02562 * 14 13 12 16 16 C 1.39111 * 120.05043 * 359.74552 * 15 14 13 17 17 S 1.76202 * 120.18478 * 180.25644 * 16 15 14 18 18 C 1.76197 * 100.00281 * 352.37104 * 17 16 15 19 19 H 1.07999 * 119.99818 * 354.41289 * 18 17 16 20 20 C 1.38811 * 119.99805 * 174.40510 * 18 17 16 21 21 N 1.31546 * 120.00055 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99637 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47136 * 60.00408 * 22 20 18 24 24 H 1.48496 * 109.47150 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47473 * 300.00165 * 22 20 18 26 26 C 1.46959 * 118.71002 * 306.63999 * 8 7 6 27 27 H 1.09000 * 109.47260 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47190 * 300.00007 * 1 2 3 29 29 H 1.09000 * 109.47183 * 59.99841 * 1 2 3 30 30 H 1.09001 * 109.46215 * 61.29516 * 5 3 2 31 31 H 1.08999 * 109.46204 * 301.34403 * 5 3 2 32 32 H 1.08990 * 109.49911 * 178.68566 * 6 5 3 33 33 H 1.09001 * 109.49572 * 58.58586 * 6 5 3 34 34 H 1.09001 * 109.58869 * 174.41631 * 7 6 5 35 35 H 1.08999 * 109.59069 * 294.70294 * 7 6 5 36 36 H 1.08007 * 120.02840 * 359.95958 * 12 11 9 37 37 H 1.08006 * 119.80663 * 180.02562 * 13 12 11 38 38 H 1.07992 * 119.78002 * 180.02562 * 14 13 12 39 39 H 1.07997 * 119.96803 * 179.97438 * 15 14 13 40 40 H 0.97003 * 120.00181 * 179.97438 * 21 20 18 41 41 H 1.08995 * 109.46824 * 293.57214 * 26 8 7 42 42 H 1.09001 * 109.70661 * 173.28183 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 2.0004 0.5124 5 6 3.3593 1.2640 0.7213 6 6 3.9675 2.6681 0.7507 7 6 4.2013 3.1490 -0.6848 8 7 2.9386 3.0539 -1.4302 9 6 2.4457 4.1235 -2.0852 10 8 1.4369 4.0143 -2.7554 11 6 3.1294 5.4262 -1.9893 12 6 4.5222 5.4842 -1.9005 13 6 5.1554 6.7049 -1.8116 14 6 4.4179 7.8791 -1.8102 15 6 3.0420 7.8400 -1.8971 16 6 2.3845 6.6178 -1.9924 17 16 0.6273 6.5640 -2.1105 18 6 0.2497 8.2624 -1.8320 19 1 1.0359 8.9541 -1.5679 20 6 -1.0583 8.7114 -1.9523 21 7 -2.0160 7.8687 -2.2736 22 14 -1.4584 10.5121 -1.6578 23 1 -0.7011 11.3514 -2.6208 24 1 -2.9147 10.7329 -1.8466 25 1 -1.0777 10.8835 -0.2713 26 6 2.2219 1.7710 -1.4440 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 4.0323 0.5877 0.1943 31 1 3.2147 0.9095 1.7418 32 1 4.9171 2.6421 1.2849 33 1 3.2837 3.3502 1.2561 34 1 4.5412 4.1846 -0.6725 35 1 4.9552 2.5227 -1.1618 36 1 5.1022 4.5732 -1.9013 37 1 6.2325 6.7473 -1.7435 38 1 4.9242 8.8304 -1.7405 39 1 2.4750 8.7592 -1.8949 40 1 -2.9301 8.1824 -2.3573 41 1 2.8126 1.0307 -1.9836 42 1 1.2558 1.8949 -1.9333 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076246530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:34 Heat of formation + Delta-G solvation = -33.377824 kcal Electronic energy + Delta-G solvation = -25026.709923 eV Core-core repulsion = 21484.806557 eV Total energy + Delta-G solvation = -3541.903366 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.31825 -38.54952 -37.41609 -36.29987 -32.80213 -32.59227 -31.40343 -30.37901 -29.64920 -26.63100 -25.96625 -25.60414 -23.18181 -22.77281 -21.90896 -20.82651 -19.41170 -17.87132 -17.11140 -16.51441 -16.29129 -15.90955 -15.52588 -15.14057 -15.08040 -14.74818 -14.40565 -14.12887 -13.79944 -13.53443 -13.36833 -13.01484 -12.89478 -12.76844 -12.70179 -12.09223 -11.87272 -11.68056 -11.38654 -11.30512 -11.21484 -11.10868 -11.04683 -10.68755 -10.60187 -10.29932 -9.86957 -9.81602 -9.53337 -9.48773 -8.76539 -8.49229 -8.30800 -8.26063 -6.59390 -6.49654 -4.21933 1.53670 1.93192 3.05528 3.06563 3.11611 3.15899 3.34858 3.39118 3.74280 4.01666 4.32175 4.66277 4.75299 4.89880 4.91688 4.96841 5.06752 5.14151 5.14993 5.28521 5.32917 5.36906 5.43610 5.54181 5.56048 5.63403 5.69955 5.75993 5.80842 5.85070 5.91475 6.06751 6.07970 6.15501 6.32229 6.51474 6.64665 6.80233 6.96699 7.08284 7.12121 7.39792 7.53380 7.69364 8.11678 8.64941 8.95823 10.54329 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.013276 B = 0.004331 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.552146 B = 6463.114793 C = 7981.919216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.384 6.384 3 C 0.075 3.925 4 H 0.067 0.933 5 C -0.114 4.114 6 C -0.133 4.133 7 C 0.073 3.927 8 N -0.611 5.611 9 C 0.564 3.436 10 O -0.513 6.513 11 C -0.167 4.167 12 C -0.081 4.081 13 C -0.183 4.183 14 C -0.078 4.078 15 C -0.151 4.151 16 C -0.049 4.049 17 S 0.136 5.864 18 C -0.580 4.580 19 H 0.092 0.908 20 C 0.082 3.918 21 N -0.859 5.859 22 Si 0.921 3.079 23 H -0.269 1.269 24 H -0.280 1.280 25 H -0.270 1.270 26 C 0.096 3.904 27 H 0.085 0.915 28 H 0.042 0.958 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.123 0.877 35 H 0.067 0.933 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.139 0.861 40 H 0.275 0.725 41 H 0.069 0.931 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.038 -10.134 5.877 16.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.302 6.302 3 C 0.016 3.984 4 H 0.085 0.915 5 C -0.152 4.152 6 C -0.172 4.172 7 C -0.049 4.049 8 N -0.347 5.347 9 C 0.354 3.646 10 O -0.389 6.389 11 C -0.182 4.182 12 C -0.101 4.101 13 C -0.207 4.207 14 C -0.099 4.099 15 C -0.177 4.177 16 C -0.168 4.168 17 S 0.398 5.602 18 C -0.727 4.727 19 H 0.110 0.890 20 C -0.129 4.129 21 N -0.491 5.491 22 Si 0.747 3.253 23 H -0.194 1.194 24 H -0.205 1.205 25 H -0.195 1.195 26 C -0.028 4.028 27 H 0.103 0.897 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.140 0.860 35 H 0.085 0.915 36 H 0.148 0.852 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.157 0.843 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.184 -11.284 5.228 16.074 hybrid contribution 0.437 2.301 0.432 2.382 sum 10.621 -8.983 5.660 15.018 Atomic orbital electron populations 1.22837 0.80766 1.02589 1.00639 1.87860 1.19957 1.27354 1.95054 1.22491 0.95420 0.84671 0.95820 0.91475 1.21578 0.95275 0.97511 1.00828 1.21936 1.01737 0.96226 0.97282 1.22713 0.85932 1.04979 0.91263 1.47840 1.23964 1.10441 1.52460 1.18365 0.83882 0.83356 0.78965 1.90803 1.24670 1.83909 1.39473 1.19086 0.93383 0.91449 1.14259 1.21289 0.92989 0.97864 0.97937 1.20686 0.98854 0.92390 1.08818 1.21102 0.93952 0.97649 0.97233 1.21429 0.94311 0.97902 1.04040 1.22951 1.03186 0.93894 0.96776 1.84356 0.88915 1.10527 1.76388 1.23699 0.97165 0.96432 1.55411 0.89042 1.25106 0.95058 0.99485 0.93241 1.69964 1.01416 1.35350 1.42370 0.86162 0.77705 0.82147 0.79331 1.19415 1.20525 1.19471 1.21908 0.99186 0.84904 0.96763 0.89669 0.93896 0.93488 0.91051 0.91201 0.90128 0.91032 0.86005 0.91509 0.85203 0.86853 0.86915 0.84333 0.91453 0.91234 0.88841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.82 101.05 1.09 1.40 16 2 O -0.38 -4.85 10.35 -35.23 -0.36 -5.21 16 3 C 0.07 0.94 2.76 -26.62 -0.07 0.87 16 4 H 0.07 0.92 7.79 -51.93 -0.40 0.52 16 5 C -0.11 -1.18 5.53 -26.69 -0.15 -1.32 16 6 C -0.13 -1.33 6.08 -26.61 -0.16 -1.49 16 7 C 0.07 0.84 4.98 -3.71 -0.02 0.82 16 8 N -0.61 -9.39 2.98 -174.01 -0.52 -9.91 16 9 C 0.56 11.18 7.15 -12.52 -0.09 11.09 16 10 O -0.51 -12.13 14.29 5.27 0.08 -12.06 16 11 C -0.17 -3.28 5.53 -104.75 -0.58 -3.86 16 12 C -0.08 -1.25 7.43 -39.20 -0.29 -1.55 16 13 C -0.18 -2.68 10.02 -39.59 -0.40 -3.08 16 14 C -0.08 -1.28 10.03 -39.54 -0.40 -1.68 16 15 C -0.15 -3.09 9.21 -39.38 -0.36 -3.46 16 16 C -0.05 -1.10 6.13 -38.39 -0.24 -1.34 16 17 S 0.14 3.62 19.18 -107.50 -2.06 1.56 16 18 C -0.58 -15.82 8.99 30.94 0.28 -15.54 16 19 H 0.09 2.35 5.00 -52.49 -0.26 2.09 16 20 C 0.08 2.23 5.49 -17.46 -0.10 2.13 16 21 N -0.86 -24.59 13.22 55.49 0.73 -23.85 16 22 Si 0.92 20.44 29.55 -169.99 -5.02 15.41 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 C 0.10 1.37 6.03 -3.69 -0.02 1.34 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.43 8.09 -51.93 -0.42 0.01 16 29 H 0.05 0.53 8.03 -51.93 -0.42 0.11 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.12 1.44 3.50 -53.19 -0.19 1.26 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.13 1.58 5.42 -52.48 -0.28 1.29 16 37 H 0.11 1.29 8.06 -52.48 -0.42 0.86 16 38 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 39 H 0.14 2.95 5.06 -52.49 -0.27 2.69 16 40 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.09 1.54 6.93 -51.93 -0.36 1.18 16 LS Contribution 348.32 15.07 5.25 5.25 Total: -1.00 -31.91 348.32 -8.95 -40.86 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.54 Total: 3.61 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -1.50 Total: -15.66 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: 0.21 Total: -33.76 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.29 Total: -17.27 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -2.06 Total: 1.56 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.91 -8.95 -40.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076246530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.477 kcal (2) G-P(sol) polarization free energy of solvation -31.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds