Wall clock time and date at job start Sat Apr 11 2020 00:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42907 * 113.99957 * 2 1 4 4 H 1.09001 * 109.52083 * 29.91844 * 3 2 1 5 5 C 1.53032 * 109.49785 * 149.99793 * 3 2 1 6 6 C 1.53040 * 109.54201 * 181.31843 * 5 3 2 7 7 C 1.53189 * 109.30935 * 298.63759 * 6 5 3 8 8 N 1.46935 * 108.89586 * 54.56177 * 7 6 5 9 9 C 1.34770 * 120.63172 * 126.46071 * 8 7 6 10 10 O 1.21605 * 120.00085 * 176.17444 * 9 8 7 11 11 C 1.47428 * 120.00286 * 356.17135 * 9 8 7 12 12 C 1.39682 * 120.21594 * 34.83143 * 11 9 8 13 13 C 1.37801 * 119.94142 * 179.97438 * 12 11 9 14 14 C 1.38661 * 120.38351 * 359.97438 * 13 12 11 15 15 C 1.37916 * 120.43326 * 0.02562 * 14 13 12 16 16 C 1.39111 * 120.05043 * 359.74552 * 15 14 13 17 17 S 1.76202 * 120.18478 * 180.25644 * 16 15 14 18 18 C 1.76197 * 100.00281 * 352.37104 * 17 16 15 19 19 H 1.07999 * 119.99818 * 354.41289 * 18 17 16 20 20 C 1.38811 * 119.99805 * 174.40510 * 18 17 16 21 21 N 1.31546 * 120.00055 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99637 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47136 * 60.00408 * 22 20 18 24 24 H 1.48496 * 109.47150 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47473 * 300.00165 * 22 20 18 26 26 C 1.46959 * 118.71002 * 306.63999 * 8 7 6 27 27 H 1.09000 * 109.47260 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47190 * 300.00007 * 1 2 3 29 29 H 1.09000 * 109.47183 * 59.99841 * 1 2 3 30 30 H 1.09001 * 109.46215 * 61.29516 * 5 3 2 31 31 H 1.08999 * 109.46204 * 301.34403 * 5 3 2 32 32 H 1.08990 * 109.49911 * 178.68566 * 6 5 3 33 33 H 1.09001 * 109.49572 * 58.58586 * 6 5 3 34 34 H 1.09001 * 109.58869 * 174.41631 * 7 6 5 35 35 H 1.08999 * 109.59069 * 294.70294 * 7 6 5 36 36 H 1.08007 * 120.02840 * 359.95958 * 12 11 9 37 37 H 1.08006 * 119.80663 * 180.02562 * 13 12 11 38 38 H 1.07992 * 119.78002 * 180.02562 * 14 13 12 39 39 H 1.07997 * 119.96803 * 179.97438 * 15 14 13 40 40 H 0.97003 * 120.00181 * 179.97438 * 21 20 18 41 41 H 1.08995 * 109.46824 * 293.57214 * 26 8 7 42 42 H 1.09001 * 109.70661 * 173.28183 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 2.0004 0.5124 5 6 3.3593 1.2640 0.7213 6 6 3.9675 2.6681 0.7507 7 6 4.2013 3.1490 -0.6848 8 7 2.9386 3.0539 -1.4302 9 6 2.4457 4.1235 -2.0852 10 8 1.4369 4.0143 -2.7554 11 6 3.1294 5.4262 -1.9893 12 6 4.5222 5.4842 -1.9005 13 6 5.1554 6.7049 -1.8116 14 6 4.4179 7.8791 -1.8102 15 6 3.0420 7.8400 -1.8971 16 6 2.3845 6.6178 -1.9924 17 16 0.6273 6.5640 -2.1105 18 6 0.2497 8.2624 -1.8320 19 1 1.0359 8.9541 -1.5679 20 6 -1.0583 8.7114 -1.9523 21 7 -2.0160 7.8687 -2.2736 22 14 -1.4584 10.5121 -1.6578 23 1 -0.7011 11.3514 -2.6208 24 1 -2.9147 10.7329 -1.8466 25 1 -1.0777 10.8835 -0.2713 26 6 2.2219 1.7710 -1.4440 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 4.0323 0.5877 0.1943 31 1 3.2147 0.9095 1.7418 32 1 4.9171 2.6421 1.2849 33 1 3.2837 3.3502 1.2561 34 1 4.5412 4.1846 -0.6725 35 1 4.9552 2.5227 -1.1618 36 1 5.1022 4.5732 -1.9013 37 1 6.2325 6.7473 -1.7435 38 1 4.9242 8.8304 -1.7405 39 1 2.4750 8.7592 -1.8949 40 1 -2.9301 8.1824 -2.3573 41 1 2.8126 1.0307 -1.9836 42 1 1.2558 1.8949 -1.9333 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076246530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:34 Heat of formation + Delta-G solvation = -54.228128 kcal Electronic energy + Delta-G solvation = -25027.614061 eV Core-core repulsion = 21484.806557 eV Total energy + Delta-G solvation = -3542.807503 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.63270 -39.73881 -38.83470 -37.47501 -34.80049 -33.76088 -32.64491 -31.84400 -30.82709 -27.90773 -27.62018 -26.83312 -24.34182 -24.05123 -23.23585 -22.01045 -20.75885 -19.60634 -18.46423 -17.85274 -17.54369 -17.11526 -17.06615 -16.64337 -16.21814 -16.14040 -15.65680 -15.48129 -15.13112 -14.78868 -14.64050 -14.57440 -14.10067 -13.97094 -13.74542 -13.54114 -13.34303 -13.00165 -12.97691 -12.82253 -12.55690 -12.26463 -12.14937 -12.02827 -11.75831 -11.60586 -11.48645 -11.36446 -11.07988 -10.80776 -10.38990 -10.21834 -9.76687 -9.56671 -8.52853 -8.46758 -6.28810 0.07603 0.49862 1.24746 1.37553 1.43306 1.59841 1.73206 2.00165 2.19332 2.76304 2.82649 2.95894 3.20122 3.55078 3.76692 3.85957 3.96267 4.01020 4.09976 4.18100 4.25815 4.38858 4.42564 4.52081 4.56028 4.61129 4.66082 4.70341 4.76555 4.78371 4.85071 4.92992 5.02617 5.10676 5.14835 5.31727 5.33781 5.44131 5.48441 5.57055 5.66488 6.07519 6.10505 6.14410 6.37070 6.92460 7.19329 8.58270 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.013276 B = 0.004331 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.552146 B = 6463.114793 C = 7981.919216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.389 6.389 3 C 0.077 3.923 4 H 0.045 0.955 5 C -0.108 4.108 6 C -0.128 4.128 7 C 0.064 3.936 8 N -0.601 5.601 9 C 0.552 3.448 10 O -0.567 6.567 11 C -0.172 4.172 12 C -0.073 4.073 13 C -0.149 4.149 14 C -0.071 4.071 15 C -0.171 4.171 16 C -0.068 4.068 17 S 0.013 5.987 18 C -0.585 4.585 19 H 0.098 0.902 20 C 0.022 3.978 21 N -0.907 5.907 22 Si 0.997 3.003 23 H -0.259 1.259 24 H -0.275 1.275 25 H -0.259 1.259 26 C 0.095 3.905 27 H 0.110 0.890 28 H 0.045 0.955 29 H 0.031 0.969 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.050 0.950 34 H 0.123 0.877 35 H 0.105 0.895 36 H 0.176 0.824 37 H 0.172 0.828 38 H 0.152 0.848 39 H 0.119 0.881 40 H 0.276 0.724 41 H 0.089 0.911 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.428 -10.285 7.363 21.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.307 6.307 3 C 0.019 3.981 4 H 0.063 0.937 5 C -0.146 4.146 6 C -0.166 4.166 7 C -0.056 4.056 8 N -0.336 5.336 9 C 0.343 3.657 10 O -0.447 6.447 11 C -0.185 4.185 12 C -0.092 4.092 13 C -0.172 4.172 14 C -0.092 4.092 15 C -0.196 4.196 16 C -0.185 4.185 17 S 0.270 5.730 18 C -0.731 4.731 19 H 0.116 0.884 20 C -0.183 4.183 21 N -0.541 5.541 22 Si 0.818 3.182 23 H -0.184 1.184 24 H -0.200 1.200 25 H -0.184 1.184 26 C -0.028 4.028 27 H 0.128 0.872 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.138 0.862 33 H 0.068 0.932 34 H 0.140 0.860 35 H 0.123 0.877 36 H 0.193 0.807 37 H 0.189 0.811 38 H 0.170 0.830 39 H 0.137 0.863 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.715 -11.471 6.755 20.595 hybrid contribution -0.861 2.159 0.009 2.325 sum 14.854 -9.311 6.764 18.791 Atomic orbital electron populations 1.22966 0.80108 1.04065 1.00077 1.87845 1.20736 1.27132 1.94958 1.22484 0.96805 0.84323 0.94538 0.93693 1.21591 0.93557 0.98197 1.01224 1.21943 1.03124 0.95262 0.96274 1.23089 0.84538 1.05897 0.92105 1.47924 1.24979 1.09426 1.51235 1.18647 0.83436 0.84585 0.79064 1.90783 1.26957 1.84761 1.42211 1.19400 0.95342 0.90338 1.13394 1.21830 0.90893 1.00559 0.95917 1.21398 1.01509 0.90739 1.03531 1.21564 0.91956 1.00541 0.95099 1.21449 0.96395 0.96331 1.05457 1.22813 1.00088 0.96136 0.99475 1.84556 0.94855 1.12116 1.81452 1.23915 0.97731 0.96093 1.55396 0.88444 1.26198 0.94725 1.04456 0.92946 1.70133 1.01740 1.37649 1.44618 0.85027 0.77630 0.75928 0.79661 1.18377 1.19950 1.18362 1.21967 0.97901 0.84841 0.98119 0.87157 0.93614 0.95005 0.89335 0.90066 0.86202 0.93153 0.85999 0.87703 0.80686 0.81091 0.83044 0.86307 0.91507 0.89261 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 10.82 113.37 1.23 1.76 16 2 O -0.39 -9.60 10.35 -148.98 -1.54 -11.14 16 3 C 0.08 1.93 2.76 30.67 0.08 2.01 16 4 H 0.04 1.30 7.79 -2.39 -0.02 1.28 16 5 C -0.11 -1.89 5.53 30.62 0.17 -1.72 16 6 C -0.13 -2.06 6.08 30.67 0.19 -1.88 16 7 C 0.06 1.20 4.98 86.36 0.43 1.63 16 8 N -0.60 -18.07 2.98 -822.70 -2.45 -20.52 16 9 C 0.55 22.65 7.15 86.67 0.62 23.27 16 10 O -0.57 -29.25 14.29 -4.05 -0.06 -29.30 16 11 C -0.17 -6.70 5.53 -19.95 -0.11 -6.81 16 12 C -0.07 -1.92 7.43 22.52 0.17 -1.75 16 13 C -0.15 -3.41 10.02 22.27 0.22 -3.19 16 14 C -0.07 -2.04 10.03 22.29 0.22 -1.82 16 15 C -0.17 -7.00 9.21 22.40 0.21 -6.79 16 16 C -0.07 -3.18 6.13 23.04 0.14 -3.04 16 17 S 0.01 0.79 19.18 -56.49 -1.08 -0.30 16 18 C -0.58 -34.12 8.99 67.96 0.61 -33.51 16 19 H 0.10 5.31 5.00 -2.91 -0.01 5.29 16 20 C 0.02 1.28 5.49 84.87 0.47 1.75 16 21 N -0.91 -55.86 13.22 21.65 0.29 -55.57 16 22 Si 1.00 43.70 29.55 68.60 2.03 45.73 16 23 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 26 C 0.09 2.75 6.03 86.35 0.52 3.27 16 27 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.05 0.97 8.09 -2.39 -0.02 0.95 16 29 H 0.03 0.78 8.03 -2.39 -0.02 0.77 16 30 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.12 2.27 3.50 -3.57 -0.01 2.26 16 35 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.18 3.08 5.42 -2.91 -0.02 3.06 16 37 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 38 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 39 H 0.12 5.26 5.06 -2.91 -0.01 5.25 16 40 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 41 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.06 2.09 6.93 -2.39 -0.02 2.07 16 Total: -1.00 -81.15 348.32 3.38 -77.76 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 1.04 Total: 20.15 kcal Atomic # 6 Polarization: -31.98 SS G_CDS: 5.17 Total: -26.81 kcal Atomic # 7 Polarization: -73.93 SS G_CDS: -2.17 Total: -76.09 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -1.60 Total: -40.44 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -1.08 Total: -0.30 kcal Total: -81.15 3.38 -77.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076246530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.537 kcal (2) G-P(sol) polarization free energy of solvation -81.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds