Wall clock time and date at job start Sat Apr 11 2020 00:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 114.00598 * 2 1 4 4 H 1.09006 * 109.52171 * 330.08587 * 3 2 1 5 5 C 1.53034 * 109.50225 * 210.00054 * 3 2 1 6 6 C 1.53039 * 109.54192 * 178.68359 * 5 3 2 7 7 C 1.53199 * 109.33749 * 61.34751 * 6 5 3 8 8 N 1.46927 * 108.77056 * 305.41652 * 7 6 5 9 9 C 1.34778 * 120.60752 * 233.57442 * 8 7 6 10 10 O 1.21552 * 120.00288 * 173.62894 * 9 8 7 11 11 C 1.47863 * 119.99613 * 353.63609 * 9 8 7 12 12 C 1.39680 * 120.10227 * 321.12419 * 11 9 8 13 13 C 1.38034 * 120.03978 * 179.78946 * 12 11 9 14 14 C 1.38184 * 120.24236 * 0.46571 * 13 12 11 15 15 C 1.39173 * 120.20450 * 359.79023 * 14 13 12 16 16 S 1.76202 * 120.02488 * 179.97438 * 15 14 13 17 17 C 1.76202 * 99.99827 * 275.51379 * 16 15 14 18 18 H 1.07995 * 120.00424 * 355.51133 * 17 16 15 19 19 C 1.38732 * 119.99673 * 175.51195 * 17 16 15 20 20 N 1.31627 * 120.00161 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 119.99822 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47325 * 60.00320 * 21 19 17 23 23 H 1.48501 * 109.47129 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47556 * 300.00198 * 21 19 17 25 25 C 1.38880 * 119.95650 * 359.97438 * 15 14 13 26 26 C 1.46928 * 118.76787 * 53.55856 * 8 7 6 27 27 H 1.09003 * 109.47140 * 59.99543 * 1 2 3 28 28 H 1.08998 * 109.47414 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47069 * 299.99995 * 1 2 3 30 30 H 1.09002 * 109.45926 * 58.66082 * 5 3 2 31 31 H 1.09004 * 109.44926 * 298.69666 * 5 3 2 32 32 H 1.08996 * 109.50106 * 181.31683 * 6 5 3 33 33 H 1.09000 * 109.49693 * 301.38444 * 6 5 3 34 34 H 1.08993 * 109.58418 * 65.17072 * 7 6 5 35 35 H 1.09002 * 109.58463 * 185.59991 * 7 6 5 36 36 H 1.07996 * 119.97708 * 0.02562 * 12 11 9 37 37 H 1.07995 * 119.88365 * 180.25191 * 13 12 11 38 38 H 1.08003 * 119.89832 * 179.75962 * 14 13 12 39 39 H 0.96995 * 119.99546 * 179.97438 * 20 19 17 40 40 H 1.08006 * 120.11930 * 179.97438 * 25 15 14 41 41 H 1.09000 * 109.59124 * 186.62266 * 26 8 7 42 42 H 1.09000 * 109.70468 * 66.26106 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 2.0004 -0.5124 5 6 3.3594 1.2638 -0.7213 6 6 3.9676 2.6678 -0.7506 7 6 4.2014 3.1494 0.6848 8 7 2.9371 3.0541 1.4273 9 6 2.4426 4.1243 2.0805 10 8 1.3420 4.0681 2.5934 11 6 3.2388 5.3668 2.1730 12 6 4.6202 5.3007 2.3688 13 6 5.3629 6.4613 2.4506 14 6 4.7436 7.6925 2.3491 15 6 3.3671 7.7703 2.1592 16 16 2.5822 9.3426 2.0310 17 6 2.3587 9.7131 3.7390 18 1 2.6256 8.9837 4.4893 19 6 1.8398 10.9420 4.1201 20 7 1.5149 11.8314 3.2057 21 14 1.6022 11.3346 5.9308 22 1 2.9115 11.2664 6.6281 23 1 1.0379 12.7011 6.0711 24 1 0.6688 10.3489 6.5328 25 6 2.6124 6.6078 2.0708 26 6 2.2220 1.7708 1.4441 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.2147 0.9094 -1.7419 31 1 4.0322 0.5875 -0.1939 32 1 4.9173 2.6419 -1.2848 33 1 3.2842 3.3499 -1.2564 34 1 4.9535 2.5219 1.1628 35 1 4.5410 4.1851 0.6720 36 1 5.1080 4.3408 2.4525 37 1 6.4313 6.4072 2.5980 38 1 5.3295 8.5971 2.4177 39 1 1.1517 12.6904 3.4722 40 1 1.5439 6.6651 1.9239 41 1 1.2558 1.8971 1.9327 42 1 2.8105 1.0292 1.9844 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079541207.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:38 Heat of formation + Delta-G solvation = -54.589251 kcal Electronic energy + Delta-G solvation = -24332.102549 eV Core-core repulsion = 20789.279386 eV Total energy + Delta-G solvation = -3542.823163 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.64690 -38.86926 -37.75492 -36.61316 -32.90204 -32.51699 -31.51041 -30.65733 -29.97700 -26.89533 -25.94699 -25.57959 -23.37587 -23.07568 -22.22885 -21.08338 -19.52402 -18.07768 -17.26455 -16.69219 -16.48049 -16.22721 -15.67532 -15.35102 -15.07142 -14.89888 -14.84841 -14.25051 -14.14064 -13.82933 -13.49015 -13.26361 -13.16052 -13.07843 -12.92739 -12.41495 -12.13499 -11.68076 -11.59986 -11.36743 -11.27706 -11.21140 -11.07795 -11.03788 -10.88106 -10.72449 -10.10781 -9.95980 -9.81819 -9.15690 -9.00002 -8.81355 -8.58090 -8.03596 -6.73567 -6.29655 -4.03846 1.21861 1.62008 2.67412 2.89099 3.20091 3.22267 3.26088 3.43469 3.48717 3.99229 4.21777 4.33748 4.48925 4.62920 4.68927 4.72316 4.87052 5.04527 5.06527 5.10280 5.14171 5.15940 5.21321 5.29172 5.40081 5.45031 5.46374 5.51360 5.55343 5.61522 5.70614 5.79156 5.83125 5.89750 5.96348 6.22364 6.28499 6.54566 6.62052 6.85972 6.89915 7.15051 7.27456 7.56893 8.14931 8.31964 9.16328 10.77092 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.020863 B = 0.002901 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.736162 B = 9649.751120 C =10232.971862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.383 6.383 3 C 0.076 3.924 4 H 0.066 0.934 5 C -0.116 4.116 6 C -0.134 4.134 7 C 0.094 3.906 8 N -0.609 5.609 9 C 0.568 3.432 10 O -0.532 6.532 11 C -0.149 4.149 12 C -0.095 4.095 13 C -0.139 4.139 14 C -0.057 4.057 15 C -0.103 4.103 16 S -0.035 6.035 17 C -0.520 4.520 18 H 0.076 0.924 19 C 0.074 3.926 20 N -0.871 5.871 21 Si 0.921 3.079 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.026 4.026 26 C 0.093 3.907 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.131 0.869 39 H 0.270 0.730 40 H 0.134 0.866 41 H 0.093 0.907 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.526 -20.702 -8.013 23.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.301 6.301 3 C 0.017 3.983 4 H 0.084 0.916 5 C -0.153 4.153 6 C -0.172 4.172 7 C -0.029 4.029 8 N -0.345 5.345 9 C 0.358 3.642 10 O -0.409 6.409 11 C -0.154 4.154 12 C -0.114 4.114 13 C -0.159 4.159 14 C -0.078 4.078 15 C -0.214 4.214 16 S 0.199 5.801 17 C -0.668 4.668 18 H 0.094 0.906 19 C -0.135 4.135 20 N -0.507 5.507 21 Si 0.747 3.253 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.047 4.047 26 C -0.030 4.030 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.123 0.877 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.149 0.851 39 H 0.080 0.920 40 H 0.152 0.848 41 H 0.111 0.889 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.625 -20.044 -8.703 22.564 hybrid contribution 0.037 -0.322 2.203 2.226 sum 5.661 -20.366 -6.501 22.115 Atomic orbital electron populations 1.22843 0.80724 1.02797 1.00455 1.87884 1.19986 1.27184 1.95003 1.22480 0.95539 0.84784 0.95503 0.91553 1.21592 0.95176 0.97466 1.01099 1.21942 1.02083 0.96267 0.96911 1.22204 0.85397 1.03902 0.91355 1.47888 1.24103 1.10430 1.52050 1.18559 0.85417 0.82806 0.77410 1.90774 1.20242 1.82872 1.46994 1.19750 0.93938 0.92907 1.08782 1.21258 0.92349 0.98587 0.99181 1.21082 0.99728 0.92344 1.02726 1.21988 0.94299 0.97674 0.93875 1.22814 0.96081 1.01284 1.01180 1.83580 1.74281 1.09601 1.12590 1.22800 1.49650 1.03872 0.90436 0.90621 1.24995 0.94619 0.94898 0.99020 1.69975 1.40544 1.06882 1.33266 0.86173 0.78837 0.77620 0.82685 1.19833 1.20737 1.19732 1.21802 1.00076 0.89736 0.93126 1.21992 0.99163 0.84664 0.97228 0.93877 0.89493 0.93642 0.90907 0.90827 0.89713 0.91036 0.91092 0.87730 0.85859 0.85792 0.85078 0.91999 0.84841 0.88863 0.90717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.82 101.05 1.09 1.32 16 2 O -0.38 -3.87 10.35 -35.23 -0.36 -4.24 16 3 C 0.08 0.74 2.76 -26.61 -0.07 0.67 16 4 H 0.07 0.69 7.79 -51.93 -0.40 0.29 16 5 C -0.12 -0.91 5.54 -26.69 -0.15 -1.06 16 6 C -0.13 -1.01 6.08 -26.61 -0.16 -1.17 16 7 C 0.09 0.84 4.84 -3.71 -0.02 0.83 16 8 N -0.61 -7.46 2.97 -173.87 -0.52 -7.98 16 9 C 0.57 9.26 7.33 -12.32 -0.09 9.17 16 10 O -0.53 -10.62 16.32 5.32 0.09 -10.53 16 11 C -0.15 -2.47 5.16 -104.99 -0.54 -3.01 16 12 C -0.09 -1.29 7.38 -39.12 -0.29 -1.58 16 13 C -0.14 -1.96 10.02 -39.68 -0.40 -2.36 16 14 C -0.06 -1.02 9.79 -39.25 -0.38 -1.40 16 15 C -0.10 -2.16 5.45 -39.00 -0.21 -2.38 16 16 S -0.04 -0.90 21.41 -107.50 -2.30 -3.20 16 17 C -0.52 -14.68 9.46 30.92 0.29 -14.39 16 18 H 0.08 2.13 7.79 -52.49 -0.41 1.72 16 19 C 0.07 2.06 5.49 -17.46 -0.10 1.97 16 20 N -0.87 -25.39 13.22 55.49 0.73 -24.65 16 21 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 C -0.03 -0.51 9.38 -38.92 -0.36 -0.87 16 26 C 0.09 1.04 6.06 -3.71 -0.02 1.02 16 27 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.38 8.03 -51.93 -0.42 -0.04 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 35 H 0.10 1.00 4.71 -51.93 -0.24 0.76 16 36 H 0.12 1.29 6.45 -52.49 -0.34 0.95 16 37 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 38 H 0.13 2.28 8.06 -52.48 -0.42 1.86 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.13 2.79 8.05 -52.48 -0.42 2.37 16 41 H 0.09 1.21 6.89 -51.93 -0.36 0.86 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 359.87 15.07 5.42 5.42 Total: -1.00 -32.76 359.87 -9.33 -42.09 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -5.95 Total: -0.12 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -1.41 Total: -13.25 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.22 Total: -32.63 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.28 Total: -14.77 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.30 Total: -3.20 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.76 -9.33 -42.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079541207.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.500 kcal (2) G-P(sol) polarization free energy of solvation -32.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds