Wall clock time and date at job start Sat Apr 11 2020 00:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 114.00598 * 2 1 4 4 H 1.09006 * 109.52171 * 330.08587 * 3 2 1 5 5 C 1.53034 * 109.50225 * 210.00054 * 3 2 1 6 6 C 1.53039 * 109.54192 * 178.68359 * 5 3 2 7 7 C 1.53199 * 109.33749 * 61.34751 * 6 5 3 8 8 N 1.46927 * 108.77056 * 305.41652 * 7 6 5 9 9 C 1.34778 * 120.60752 * 233.57442 * 8 7 6 10 10 O 1.21552 * 120.00288 * 173.62894 * 9 8 7 11 11 C 1.47863 * 119.99613 * 353.63609 * 9 8 7 12 12 C 1.39680 * 120.10227 * 321.12419 * 11 9 8 13 13 C 1.38034 * 120.03978 * 179.78946 * 12 11 9 14 14 C 1.38184 * 120.24236 * 0.46571 * 13 12 11 15 15 C 1.39173 * 120.20450 * 359.79023 * 14 13 12 16 16 S 1.76202 * 120.02488 * 179.97438 * 15 14 13 17 17 C 1.76202 * 99.99827 * 275.51379 * 16 15 14 18 18 H 1.07995 * 120.00424 * 355.51133 * 17 16 15 19 19 C 1.38732 * 119.99673 * 175.51195 * 17 16 15 20 20 N 1.31627 * 120.00161 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 119.99822 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47325 * 60.00320 * 21 19 17 23 23 H 1.48501 * 109.47129 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47556 * 300.00198 * 21 19 17 25 25 C 1.38880 * 119.95650 * 359.97438 * 15 14 13 26 26 C 1.46928 * 118.76787 * 53.55856 * 8 7 6 27 27 H 1.09003 * 109.47140 * 59.99543 * 1 2 3 28 28 H 1.08998 * 109.47414 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47069 * 299.99995 * 1 2 3 30 30 H 1.09002 * 109.45926 * 58.66082 * 5 3 2 31 31 H 1.09004 * 109.44926 * 298.69666 * 5 3 2 32 32 H 1.08996 * 109.50106 * 181.31683 * 6 5 3 33 33 H 1.09000 * 109.49693 * 301.38444 * 6 5 3 34 34 H 1.08993 * 109.58418 * 65.17072 * 7 6 5 35 35 H 1.09002 * 109.58463 * 185.59991 * 7 6 5 36 36 H 1.07996 * 119.97708 * 0.02562 * 12 11 9 37 37 H 1.07995 * 119.88365 * 180.25191 * 13 12 11 38 38 H 1.08003 * 119.89832 * 179.75962 * 14 13 12 39 39 H 0.96995 * 119.99546 * 179.97438 * 20 19 17 40 40 H 1.08006 * 120.11930 * 179.97438 * 25 15 14 41 41 H 1.09000 * 109.59124 * 186.62266 * 26 8 7 42 42 H 1.09000 * 109.70468 * 66.26106 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 2.0004 -0.5124 5 6 3.3594 1.2638 -0.7213 6 6 3.9676 2.6678 -0.7506 7 6 4.2014 3.1494 0.6848 8 7 2.9371 3.0541 1.4273 9 6 2.4426 4.1243 2.0805 10 8 1.3420 4.0681 2.5934 11 6 3.2388 5.3668 2.1730 12 6 4.6202 5.3007 2.3688 13 6 5.3629 6.4613 2.4506 14 6 4.7436 7.6925 2.3491 15 6 3.3671 7.7703 2.1592 16 16 2.5822 9.3426 2.0310 17 6 2.3587 9.7131 3.7390 18 1 2.6256 8.9837 4.4893 19 6 1.8398 10.9420 4.1201 20 7 1.5149 11.8314 3.2057 21 14 1.6022 11.3346 5.9308 22 1 2.9115 11.2664 6.6281 23 1 1.0379 12.7011 6.0711 24 1 0.6688 10.3489 6.5328 25 6 2.6124 6.6078 2.0708 26 6 2.2220 1.7708 1.4441 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.2147 0.9094 -1.7419 31 1 4.0322 0.5875 -0.1939 32 1 4.9173 2.6419 -1.2848 33 1 3.2842 3.3499 -1.2564 34 1 4.9535 2.5219 1.1628 35 1 4.5410 4.1851 0.6720 36 1 5.1080 4.3408 2.4525 37 1 6.4313 6.4072 2.5980 38 1 5.3295 8.5971 2.4177 39 1 1.1517 12.6904 3.4722 40 1 1.5439 6.6651 1.9239 41 1 1.2558 1.8971 1.9327 42 1 2.8105 1.0292 1.9844 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079541207.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:37 Heat of formation + Delta-G solvation = -75.082975 kcal Electronic energy + Delta-G solvation = -24332.991223 eV Core-core repulsion = 20789.279386 eV Total energy + Delta-G solvation = -3543.711837 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.75583 -39.86997 -38.98863 -37.54159 -34.66183 -33.83894 -32.58273 -32.00576 -30.96770 -27.76742 -27.63084 -26.87266 -24.39445 -24.13731 -23.44729 -22.02072 -20.62916 -19.82669 -18.62269 -17.80521 -17.48282 -17.19745 -16.93791 -16.73376 -16.38689 -16.22632 -16.03188 -15.29888 -15.26748 -14.95927 -14.73080 -14.55428 -14.21509 -14.08552 -13.82493 -13.76641 -13.28680 -13.18369 -12.97398 -12.81665 -12.64794 -12.45134 -12.27468 -12.06103 -11.93838 -11.74109 -11.61765 -11.25856 -11.18810 -10.84898 -10.67653 -10.01959 -9.72264 -9.64541 -8.81879 -8.40110 -6.20102 -0.12376 0.22741 1.28335 1.37896 1.42485 1.50487 1.73179 1.76857 2.22844 2.68144 2.74527 2.92725 3.33807 3.40429 3.74168 3.76904 3.93039 3.94219 3.95849 4.08350 4.15303 4.32265 4.37984 4.43591 4.45879 4.47957 4.59306 4.63907 4.68675 4.75821 4.79782 4.87607 4.90876 5.02584 5.13074 5.20440 5.26841 5.30799 5.37464 5.40116 5.49606 5.84749 6.10102 6.14768 6.19353 6.94341 7.00295 8.66704 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.020863 B = 0.002901 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.736162 B = 9649.751120 C =10232.971862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.391 6.391 3 C 0.078 3.922 4 H 0.052 0.948 5 C -0.111 4.111 6 C -0.129 4.129 7 C 0.084 3.916 8 N -0.596 5.596 9 C 0.563 3.437 10 O -0.584 6.584 11 C -0.149 4.149 12 C -0.067 4.067 13 C -0.116 4.116 14 C -0.065 4.065 15 C -0.124 4.124 16 S -0.093 6.093 17 C -0.538 4.538 18 H 0.066 0.934 19 C 0.022 3.978 20 N -0.906 5.906 21 Si 0.990 3.010 22 H -0.261 1.261 23 H -0.270 1.270 24 H -0.271 1.271 25 C -0.049 4.049 26 C 0.091 3.909 27 H 0.047 0.953 28 H 0.106 0.894 29 H 0.036 0.964 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.055 0.945 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.172 0.828 37 H 0.176 0.824 38 H 0.131 0.869 39 H 0.274 0.726 40 H 0.102 0.898 41 H 0.066 0.934 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.866 -23.413 -7.661 26.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.309 6.309 3 C 0.019 3.981 4 H 0.070 0.930 5 C -0.148 4.148 6 C -0.167 4.167 7 C -0.037 4.037 8 N -0.329 5.329 9 C 0.353 3.647 10 O -0.464 6.464 11 C -0.154 4.154 12 C -0.086 4.086 13 C -0.135 4.135 14 C -0.086 4.086 15 C -0.235 4.235 16 S 0.141 5.859 17 C -0.685 4.685 18 H 0.084 0.916 19 C -0.184 4.184 20 N -0.542 5.542 21 Si 0.812 3.188 22 H -0.185 1.185 23 H -0.195 1.195 24 H -0.197 1.197 25 C -0.070 4.070 26 C -0.031 4.031 27 H 0.066 0.934 28 H 0.125 0.875 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.134 0.866 33 H 0.073 0.927 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.189 0.811 37 H 0.194 0.806 38 H 0.149 0.851 39 H 0.083 0.917 40 H 0.120 0.880 41 H 0.085 0.915 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.005 -22.788 -8.396 25.901 hybrid contribution -0.960 0.305 1.991 2.232 sum 8.045 -22.482 -6.405 24.723 Atomic orbital electron populations 1.22978 0.79953 1.04058 1.00280 1.87867 1.20912 1.27179 1.94953 1.22481 0.96688 0.84487 0.94457 0.93027 1.21598 0.93849 0.97970 1.01388 1.21941 1.03243 0.95492 0.96000 1.22575 0.84270 1.04647 0.92177 1.47957 1.24951 1.09497 1.50539 1.18592 0.84830 0.83613 0.77675 1.90751 1.22306 1.83773 1.49616 1.19814 0.95527 0.91593 1.08432 1.21765 0.90584 1.00689 0.95524 1.21538 1.02026 0.90275 0.99703 1.22062 0.92697 0.99799 0.94070 1.22440 0.97505 0.98363 1.05201 1.83453 1.76170 1.13897 1.12344 1.23025 1.50067 1.04095 0.91324 0.91621 1.25974 0.93983 0.94572 1.03859 1.70094 1.41254 1.07338 1.35491 0.85123 0.79177 0.77711 0.76796 1.18535 1.19466 1.19658 1.21510 0.98842 0.91209 0.95474 1.22083 0.98250 0.84382 0.98415 0.93428 0.87543 0.94511 0.90102 0.89459 0.86593 0.92661 0.87491 0.88007 0.81070 0.80647 0.85093 0.91654 0.88002 0.91519 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.82 113.37 1.23 1.59 16 2 O -0.39 -7.35 10.35 -148.98 -1.54 -8.89 16 3 C 0.08 1.41 2.76 30.67 0.08 1.50 16 4 H 0.05 1.07 7.79 -2.38 -0.02 1.06 16 5 C -0.11 -1.37 5.54 30.62 0.17 -1.20 16 6 C -0.13 -1.46 6.08 30.67 0.19 -1.27 16 7 C 0.08 1.15 4.84 86.36 0.42 1.56 16 8 N -0.60 -13.46 2.97 -822.26 -2.44 -15.91 16 9 C 0.56 18.31 7.33 86.79 0.64 18.94 16 10 O -0.58 -24.46 16.32 -3.88 -0.06 -24.52 16 11 C -0.15 -4.83 5.16 -20.11 -0.10 -4.93 16 12 C -0.07 -1.56 7.38 22.57 0.17 -1.39 16 13 C -0.12 -2.77 10.02 22.21 0.22 -2.55 16 14 C -0.07 -2.27 9.79 22.48 0.22 -2.05 16 15 C -0.12 -5.41 5.45 22.65 0.12 -5.29 16 16 S -0.09 -5.09 21.41 -56.49 -1.21 -6.30 16 17 C -0.54 -31.72 9.46 67.94 0.64 -31.08 16 18 H 0.07 3.85 7.79 -2.91 -0.02 3.83 16 19 C 0.02 1.24 5.49 84.84 0.47 1.70 16 20 N -0.91 -54.54 13.22 21.64 0.29 -54.25 16 21 Si 0.99 44.80 29.55 68.60 2.03 46.83 16 22 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 25 C -0.05 -2.02 9.38 22.70 0.21 -1.81 16 26 C 0.09 1.94 6.06 86.36 0.52 2.47 16 27 H 0.05 0.69 8.09 -2.39 -0.02 0.67 16 28 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.04 0.63 8.03 -2.39 -0.02 0.61 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.11 0.82 8.09 -2.39 -0.02 0.80 16 35 H 0.10 1.48 4.71 -2.39 -0.01 1.47 16 36 H 0.17 2.41 6.45 -2.91 -0.02 2.39 16 37 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 38 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 39 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 40 H 0.10 4.74 8.05 -2.91 -0.02 4.72 16 41 H 0.07 1.79 6.89 -2.39 -0.02 1.77 16 42 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -77.99 359.87 3.27 -74.72 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 1.02 Total: 12.11 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: 5.20 Total: -23.79 kcal Atomic # 7 Polarization: -68.00 SS G_CDS: -2.16 Total: -70.16 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -1.61 Total: -33.41 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: -5.09 SS G_CDS: -1.21 Total: -6.30 kcal Total: -77.99 3.27 -74.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079541207.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.363 kcal (2) G-P(sol) polarization free energy of solvation -77.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds