Wall clock time and date at job start Sat Apr 11 2020 00:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42899 * 113.99796 * 2 1 4 4 H 1.08991 * 109.50204 * 30.06281 * 3 2 1 5 5 C 1.53041 * 109.51905 * 150.14781 * 3 2 1 6 6 C 1.53361 * 109.60455 * 181.33994 * 5 3 2 7 7 C 1.53190 * 109.14592 * 298.70937 * 6 5 3 8 8 N 1.46924 * 108.89547 * 54.57827 * 7 6 5 9 9 C 1.34783 * 120.62834 * 126.33746 * 8 7 6 10 10 O 1.21550 * 119.99723 * 178.45653 * 9 8 7 11 11 C 1.47859 * 120.00154 * 358.46066 * 9 8 7 12 12 C 1.39679 * 120.10145 * 32.49851 * 11 9 8 13 13 C 1.38033 * 120.03765 * 180.02562 * 12 11 9 14 14 C 1.38183 * 120.24642 * 359.97438 * 13 12 11 15 15 C 1.39187 * 120.20063 * 0.02562 * 14 13 12 16 16 S 1.76203 * 120.02081 * 180.02562 * 15 14 13 17 17 C 1.76198 * 99.99671 * 274.38624 * 16 15 14 18 18 H 1.07999 * 120.00153 * 354.85312 * 17 16 15 19 19 C 1.38726 * 119.99753 * 174.85664 * 17 16 15 20 20 N 1.31627 * 120.00299 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00130 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46959 * 90.00019 * 21 19 17 23 23 H 1.48499 * 109.47331 * 209.99796 * 21 19 17 24 24 H 1.48498 * 109.47080 * 330.00503 * 21 19 17 25 25 C 1.38881 * 119.95586 * 359.76718 * 15 14 13 26 26 C 1.46920 * 118.74059 * 306.31900 * 8 7 6 27 27 H 1.09002 * 109.47015 * 59.99664 * 1 2 3 28 28 H 1.08992 * 109.47253 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46905 * 300.00102 * 1 2 3 30 30 H 1.09004 * 109.46194 * 301.34571 * 5 3 2 31 31 H 1.08994 * 109.46187 * 61.30989 * 5 3 2 32 32 H 1.08999 * 109.68020 * 178.74524 * 6 5 3 33 33 H 1.09003 * 109.47265 * 58.54659 * 6 5 3 34 34 H 1.09002 * 109.58821 * 294.71654 * 7 6 5 35 35 H 1.09002 * 109.58370 * 174.43796 * 7 6 5 36 36 H 1.07996 * 119.97967 * 359.97438 * 12 11 9 37 37 H 1.07995 * 119.88013 * 180.02562 * 13 12 11 38 38 H 1.07996 * 119.90013 * 180.02562 * 14 13 12 39 39 H 0.96993 * 120.00308 * 179.97438 * 20 19 17 40 40 H 1.07995 * 120.11545 * 180.27487 * 25 15 14 41 41 H 1.09003 * 109.58881 * 173.39249 * 26 8 7 42 42 H 1.08993 * 109.58598 * 293.81979 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3459 1.9995 0.5147 5 6 3.3611 1.2638 0.7180 6 6 3.9713 2.6705 0.7485 7 6 4.1988 3.1507 -0.6883 8 7 2.9327 3.0563 -1.4277 9 6 2.4362 4.1269 -2.0788 10 8 1.4022 4.0285 -2.7101 11 6 3.1494 5.4210 -2.0251 12 6 4.5432 5.4496 -1.9388 13 6 5.2077 6.6585 -1.8883 14 6 4.4990 7.8443 -1.9233 15 6 3.1099 7.8275 -2.0093 16 16 2.2110 9.3423 -2.0543 17 6 2.0621 9.6611 -0.3278 18 1 2.4130 8.9325 0.3881 19 6 1.4941 10.8479 0.1119 20 7 1.3824 11.0859 1.4016 21 14 0.8879 12.1083 -1.1264 22 1 -0.5354 11.8372 -1.4522 23 1 1.0124 13.4703 -0.5478 24 1 1.7045 12.0193 -2.3635 25 6 2.4331 6.6160 -2.0650 26 6 2.2183 1.7725 -1.4441 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.2192 0.9082 1.7386 31 1 4.0331 0.5885 0.1885 32 1 4.9231 2.6463 1.2791 33 1 3.2884 3.3518 1.2560 34 1 4.9501 2.5237 -1.1685 35 1 4.5395 4.1861 -0.6778 36 1 5.1013 4.5255 -1.9107 37 1 6.2854 6.6777 -1.8219 38 1 5.0246 8.7869 -1.8839 39 1 0.9856 11.9158 1.7091 40 1 1.3557 6.6000 -2.1362 41 1 1.2508 1.8989 -1.9302 42 1 2.8079 1.0332 -1.9860 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079541211.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:41 Heat of formation + Delta-G solvation = -59.076105 kcal Electronic energy + Delta-G solvation = -24485.882999 eV Core-core repulsion = 20942.865272 eV Total energy + Delta-G solvation = -3543.017727 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.85026 -39.88911 -39.02364 -37.59295 -34.72075 -33.87843 -32.75167 -32.09706 -30.90380 -27.93056 -27.65698 -26.99134 -24.46816 -24.29345 -23.41794 -22.05713 -20.72730 -19.91405 -18.62221 -17.85542 -17.65989 -17.19240 -17.12476 -16.74737 -16.35118 -16.22095 -16.02570 -15.39619 -15.19503 -14.98292 -14.91777 -14.60848 -14.26669 -14.07855 -13.91023 -13.81496 -13.56887 -13.19570 -13.09281 -12.92613 -12.63551 -12.43518 -12.28014 -12.08913 -11.91019 -11.68523 -11.61320 -11.25264 -11.06670 -10.96461 -10.83370 -10.06547 -9.73639 -9.65041 -9.15633 -8.54101 -6.28472 -0.19582 0.17305 1.05719 1.30473 1.43895 1.52126 1.64725 1.80901 2.21235 2.51866 2.72266 2.83725 2.92234 3.30720 3.71550 3.74253 3.87348 3.88751 3.95075 4.04525 4.12915 4.28087 4.34401 4.41220 4.42504 4.46105 4.56240 4.59286 4.66312 4.72263 4.78084 4.84797 4.87851 5.00047 5.10986 5.14786 5.23830 5.26860 5.36327 5.42148 5.68482 5.80220 6.07951 6.09373 6.17900 6.88371 6.93085 8.59023 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.017112 B = 0.003161 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.856520 B = 8855.220369 C = 9316.250986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.390 6.390 3 C 0.076 3.924 4 H 0.048 0.952 5 C -0.111 4.111 6 C -0.131 4.131 7 C 0.062 3.938 8 N -0.596 5.596 9 C 0.562 3.438 10 O -0.582 6.582 11 C -0.152 4.152 12 C -0.077 4.077 13 C -0.117 4.117 14 C -0.062 4.062 15 C -0.113 4.113 16 S -0.121 6.121 17 C -0.521 4.521 18 H 0.049 0.951 19 C 0.044 3.956 20 N -0.918 5.918 21 Si 0.915 3.085 22 H -0.265 1.265 23 H -0.257 1.257 24 H -0.224 1.224 25 C -0.045 4.045 26 C 0.093 3.907 27 H 0.038 0.962 28 H 0.108 0.892 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.049 0.951 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.189 0.811 37 H 0.180 0.820 38 H 0.137 0.863 39 H 0.278 0.722 40 H 0.106 0.894 41 H 0.068 0.932 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.307 -20.994 -3.184 23.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.308 6.308 3 C 0.018 3.982 4 H 0.066 0.934 5 C -0.148 4.148 6 C -0.169 4.169 7 C -0.058 4.058 8 N -0.329 5.329 9 C 0.352 3.648 10 O -0.463 6.463 11 C -0.157 4.157 12 C -0.095 4.095 13 C -0.136 4.136 14 C -0.082 4.082 15 C -0.224 4.224 16 S 0.113 5.887 17 C -0.668 4.668 18 H 0.067 0.933 19 C -0.162 4.162 20 N -0.556 5.556 21 Si 0.736 3.264 22 H -0.190 1.190 23 H -0.181 1.181 24 H -0.147 1.147 25 C -0.067 4.067 26 C -0.030 4.030 27 H 0.057 0.943 28 H 0.126 0.874 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.135 0.865 33 H 0.068 0.932 34 H 0.131 0.869 35 H 0.138 0.862 36 H 0.206 0.794 37 H 0.198 0.802 38 H 0.155 0.845 39 H 0.087 0.913 40 H 0.125 0.875 41 H 0.086 0.914 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.397 -20.465 -4.236 22.914 hybrid contribution -1.028 0.395 1.124 1.573 sum 8.369 -20.071 -3.112 21.967 Atomic orbital electron populations 1.22986 0.79940 1.04116 1.00257 1.87867 1.20918 1.27050 1.94961 1.22476 0.96635 0.84505 0.94628 0.93356 1.21651 0.93897 0.97942 1.01342 1.22012 1.03173 0.95437 0.96267 1.23153 0.84566 1.05844 0.92267 1.47939 1.24705 1.09539 1.50692 1.18537 0.83691 0.84132 0.78484 1.90735 1.25943 1.85082 1.44533 1.19816 0.95627 0.91589 1.08646 1.22197 0.91549 1.00731 0.95024 1.21604 1.02136 0.90282 0.99617 1.22109 0.92052 1.00636 0.93434 1.22002 0.97415 0.96575 1.06429 1.82710 1.72128 1.23490 1.10386 1.22345 1.47115 1.07401 0.89901 0.93315 1.25659 0.94215 0.99131 0.97155 1.70019 1.43798 1.26757 1.15035 0.85858 0.80476 0.79117 0.80925 1.18994 1.18089 1.14673 1.21529 0.99486 0.91154 0.94516 1.22072 0.98336 0.84444 0.98127 0.94344 0.87414 0.93667 0.90365 0.89209 0.86522 0.93191 0.86912 0.86236 0.79383 0.80249 0.84528 0.91269 0.87547 0.91357 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.82 113.37 1.23 1.61 16 2 O -0.39 -7.74 10.35 -148.98 -1.54 -9.29 16 3 C 0.08 1.50 2.76 30.67 0.08 1.58 16 4 H 0.05 1.11 7.79 -2.39 -0.02 1.09 16 5 C -0.11 -1.56 5.54 30.73 0.17 -1.39 16 6 C -0.13 -1.74 6.11 30.78 0.19 -1.55 16 7 C 0.06 0.88 4.89 86.36 0.42 1.30 16 8 N -0.60 -13.78 2.97 -822.30 -2.45 -16.23 16 9 C 0.56 18.12 7.45 86.79 0.65 18.76 16 10 O -0.58 -23.66 16.18 -3.87 -0.06 -23.72 16 11 C -0.15 -4.85 5.53 -20.11 -0.11 -4.96 16 12 C -0.08 -1.71 7.44 22.57 0.17 -1.54 16 13 C -0.12 -2.66 10.02 22.21 0.22 -2.43 16 14 C -0.06 -2.04 9.79 22.48 0.22 -1.82 16 15 C -0.11 -4.75 5.45 22.65 0.12 -4.63 16 16 S -0.12 -6.01 19.38 -56.49 -1.09 -7.11 16 17 C -0.52 -30.74 10.01 67.94 0.68 -30.06 16 18 H 0.05 3.17 8.02 -2.91 -0.02 3.15 16 19 C 0.04 2.55 5.50 84.84 0.47 3.02 16 20 N -0.92 -56.11 13.97 21.64 0.30 -55.81 16 21 Si 0.92 43.44 27.73 68.60 1.90 45.34 16 22 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 24 H -0.22 -10.09 6.74 99.48 0.67 -9.42 16 25 C -0.05 -1.83 9.35 22.70 0.21 -1.62 16 26 C 0.09 2.03 6.05 86.37 0.52 2.55 16 27 H 0.04 0.68 8.02 -2.39 -0.02 0.66 16 28 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.04 0.72 8.09 -2.38 -0.02 0.70 16 30 H 0.08 1.05 8.14 -2.38 -0.02 1.04 16 31 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.11 0.86 8.13 -2.39 -0.02 0.84 16 35 H 0.12 1.76 3.54 -3.87 -0.01 1.74 16 36 H 0.19 2.36 5.30 -2.91 -0.02 2.35 16 37 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 38 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 39 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 40 H 0.11 4.82 7.96 -2.91 -0.02 4.79 16 41 H 0.07 1.85 6.89 -2.39 -0.02 1.83 16 42 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -77.70 355.26 3.28 -74.41 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.98 Total: 13.58 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: 5.24 Total: -21.18 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -2.14 Total: -72.04 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -1.61 Total: -33.01 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.90 Total: 45.34 kcal Atomic # 16 Polarization: -6.01 SS G_CDS: -1.09 Total: -7.11 kcal Total: -77.70 3.28 -74.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079541211.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.338 kcal (2) G-P(sol) polarization free energy of solvation -77.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds