Wall clock time and date at job start Sat Apr 11 2020 00:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99771 * 2 1 4 4 C 1.53009 * 109.47062 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46845 * 64.99635 * 4 3 2 6 6 C 1.46506 * 119.99680 * 90.00423 * 5 4 3 7 7 C 1.50701 * 109.47002 * 96.09691 * 6 5 4 8 8 H 1.07994 * 120.00088 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99702 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99990 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99944 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.46850 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47028 * 120.00142 * 11 9 7 14 14 H 1.48501 * 109.47085 * 240.00497 * 11 9 7 15 15 C 1.34773 * 120.00200 * 269.99569 * 5 4 3 16 16 O 1.21280 * 119.99990 * 3.66364 * 15 5 4 17 17 C 1.50705 * 120.00155 * 183.65736 * 15 5 4 18 18 H 1.09001 * 109.25819 * 49.77217 * 17 15 5 19 19 C 1.54135 * 109.27164 * 290.26718 * 17 15 5 20 20 S 1.83100 * 101.17628 * 267.89949 * 19 17 15 21 21 C 1.77437 * 96.58680 * 335.12515 * 20 19 17 22 22 C 1.38815 * 130.57037 * 195.48431 * 21 20 19 23 23 C 1.38025 * 120.16122 * 179.72368 * 22 21 20 24 24 C 1.38321 * 119.29016 * 0.02562 * 23 22 21 25 25 C 1.37703 * 120.54349 * 0.08157 * 24 23 22 26 26 C 1.38889 * 108.27555 * 15.41419 * 21 20 19 27 27 H 1.09005 * 109.47169 * 300.00024 * 1 2 3 28 28 H 1.08993 * 109.47138 * 60.00015 * 1 2 3 29 29 H 1.08999 * 109.47249 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47221 * 60.00326 * 3 2 1 31 31 H 1.08999 * 109.47200 * 299.99742 * 3 2 1 32 32 H 1.08999 * 109.46943 * 184.99927 * 4 3 2 33 33 H 1.09000 * 109.46890 * 305.00205 * 4 3 2 34 34 H 1.09000 * 109.46817 * 216.09603 * 6 5 4 35 35 H 1.08998 * 109.47209 * 336.09566 * 6 5 4 36 36 H 0.97002 * 119.99862 * 179.97438 * 10 9 7 37 37 H 1.09004 * 111.09474 * 25.83082 * 19 17 15 38 38 H 1.08999 * 111.10089 * 149.91806 * 19 17 15 39 39 H 1.07996 * 119.91854 * 359.74835 * 22 21 20 40 40 H 1.07997 * 120.35640 * 180.02562 * 23 22 21 41 41 H 1.08001 * 119.72694 * 180.12429 * 24 23 22 42 42 H 1.08000 * 119.46891 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.2863 1.4007 -2.4148 7 6 5.7704 1.6570 -2.4669 8 1 6.4174 1.2392 -1.7098 9 6 6.3022 2.4250 -3.4810 10 7 5.5142 2.9342 -4.4026 11 14 8.1420 2.7421 -3.5459 12 1 8.8020 2.0624 -2.4025 13 1 8.6909 2.2124 -4.8200 14 1 8.3955 4.2032 -3.4672 15 6 4.0949 -0.7755 -1.3355 16 8 3.7746 -1.4720 -0.3957 17 6 4.6261 -1.4083 -2.5959 18 1 5.5510 -0.9100 -2.8862 19 6 3.5866 -1.2481 -3.7227 20 16 2.6383 -2.8053 -3.5548 21 6 3.9312 -3.7495 -2.7897 22 6 4.0638 -5.1197 -2.6110 23 6 5.1799 -5.6320 -1.9809 24 6 6.1604 -4.7662 -1.5312 25 6 6.0276 -3.4068 -1.7066 26 6 4.9062 -2.8685 -2.3400 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.9785 2.1766 0.0889 33 1 3.8514 0.5682 0.8409 34 1 3.9739 0.8885 -3.3249 35 1 3.7564 2.3495 -2.3317 36 1 5.8883 3.4748 -5.1158 37 1 2.9494 -0.3811 -3.5482 38 1 4.0708 -1.1870 -4.6974 39 1 3.2921 -5.7865 -2.9661 40 1 5.2865 -6.6975 -1.8405 41 1 7.0375 -5.1596 -1.0390 42 1 6.8036 -2.7466 -1.3482 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079909859.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:45 Heat of formation + Delta-G solvation = -43.834432 kcal Electronic energy + Delta-G solvation = -25748.129747 eV Core-core repulsion = 22205.772948 eV Total energy + Delta-G solvation = -3542.356799 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.87862 -38.46844 -37.25774 -34.97125 -34.10039 -32.68594 -30.61779 -30.12449 -28.83099 -27.07780 -26.00806 -24.65093 -23.07743 -22.63773 -22.47170 -20.86275 -18.45132 -17.37242 -16.96084 -16.29216 -16.14412 -15.63825 -15.31385 -15.20394 -15.00550 -14.53157 -14.47910 -14.37195 -13.91842 -13.24628 -13.14790 -12.77245 -12.64140 -12.41026 -12.15389 -12.09181 -12.03906 -11.62119 -11.54725 -11.26990 -11.21348 -11.00627 -10.80097 -10.71530 -10.64350 -10.18993 -9.86270 -9.78860 -9.38399 -9.30824 -9.00531 -8.64374 -8.49220 -7.70812 -7.06621 -6.27367 -4.35388 1.43215 1.57939 1.92009 2.56899 3.15452 3.25136 3.28105 3.46108 3.74074 4.04940 4.20642 4.28020 4.73693 4.97141 5.06534 5.12565 5.21949 5.27753 5.40676 5.49019 5.52295 5.63085 5.66537 5.69367 5.70944 5.77142 5.86592 5.89390 5.97842 6.07160 6.15662 6.23097 6.36871 6.50390 6.59218 6.70145 6.71643 7.07594 7.11530 7.45230 7.59644 7.69347 7.96821 8.32130 8.72343 9.08715 9.33822 10.78640 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.009462 B = 0.006160 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.619302 B = 4544.012300 C = 6237.712698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.364 6.364 3 C 0.044 3.956 4 C 0.124 3.876 5 N -0.596 5.596 6 C 0.228 3.772 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.067 3.933 10 N -0.888 5.888 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.281 1.281 14 H -0.282 1.282 15 C 0.534 3.466 16 O -0.535 6.535 17 C -0.078 4.078 18 H 0.134 0.866 19 C -0.063 4.063 20 S -0.160 6.160 21 C -0.064 4.064 22 C -0.095 4.095 23 C -0.109 4.109 24 C -0.125 4.125 25 C -0.081 4.081 26 C -0.066 4.066 27 H 0.032 0.968 28 H 0.034 0.966 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.043 0.957 35 H 0.036 0.964 36 H 0.266 0.734 37 H 0.124 0.876 38 H 0.107 0.893 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.122 0.878 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.087 -8.265 3.278 9.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.282 6.282 3 C -0.034 4.034 4 C 0.001 3.999 5 N -0.328 5.328 6 C 0.108 3.892 7 C -0.579 4.579 8 H 0.080 0.920 9 C -0.136 4.136 10 N -0.526 5.526 11 Si 0.721 3.279 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.208 1.208 15 C 0.320 3.680 16 O -0.412 6.412 17 C -0.100 4.100 18 H 0.152 0.848 19 C -0.211 4.211 20 S 0.082 5.918 21 C -0.177 4.177 22 C -0.119 4.119 23 C -0.128 4.128 24 C -0.145 4.145 25 C -0.101 4.101 26 C -0.071 4.071 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.142 0.858 38 H 0.126 0.874 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.140 0.860 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.435 -8.842 3.205 10.863 hybrid contribution 2.049 1.097 0.149 2.329 sum -3.386 -7.745 3.354 9.094 Atomic orbital electron populations 1.22659 0.82586 1.02167 0.99012 1.88168 1.18125 1.26832 1.95114 1.23049 0.95427 0.85309 0.99628 1.21309 0.91147 0.99189 0.88300 1.48023 1.65263 1.05738 1.13772 1.19638 0.96332 0.90480 0.82767 1.21541 0.92511 1.32688 1.11165 0.91968 1.24936 0.98300 0.95174 0.95227 1.69918 1.35141 1.33788 1.13779 0.86506 0.85008 0.78213 0.78209 1.19604 1.20739 1.20799 1.19703 0.77945 0.82339 0.88029 1.90645 1.49347 1.61904 1.39299 1.20716 1.02074 0.92545 0.94640 0.84848 1.24424 0.98558 0.96735 1.01388 1.85785 1.20116 1.10152 1.75716 1.21997 0.96679 0.96322 1.02669 1.20300 0.98553 0.92023 1.00997 1.20974 0.93895 0.99398 0.98579 1.20858 0.99495 0.92985 1.01152 1.20795 0.96653 0.95243 0.97439 1.20393 0.95137 0.92762 0.98851 0.94927 0.94701 0.90148 0.93412 0.93331 0.89017 0.90281 0.93954 0.94559 0.92468 0.85791 0.87422 0.85993 0.85615 0.85956 0.86118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.36 -6.66 9.34 -47.01 -0.44 -7.09 16 3 C 0.04 0.71 6.28 37.16 0.23 0.95 16 4 C 0.12 2.24 5.82 -4.04 -0.02 2.22 16 5 N -0.60 -12.22 2.45 -175.05 -0.43 -12.64 16 6 C 0.23 5.06 4.71 -5.19 -0.02 5.04 16 7 C -0.54 -13.15 8.27 -34.44 -0.28 -13.44 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -23.16 13.29 55.43 0.74 -22.42 16 11 Si 0.89 19.65 29.54 -169.99 -5.02 14.62 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 15 C 0.53 11.27 6.43 -10.98 -0.07 11.20 16 16 O -0.53 -12.52 14.70 -6.22 -0.09 -12.62 16 17 C -0.08 -1.50 2.20 -92.25 -0.20 -1.70 16 18 H 0.13 2.69 6.92 -51.93 -0.36 2.33 16 19 C -0.06 -1.13 5.84 37.75 0.22 -0.91 16 20 S -0.16 -2.81 23.05 -107.50 -2.48 -5.29 16 21 C -0.06 -1.13 6.48 -39.13 -0.25 -1.39 16 22 C -0.09 -1.43 10.05 -39.45 -0.40 -1.82 16 23 C -0.11 -1.44 10.08 -39.63 -0.40 -1.84 16 24 C -0.12 -1.74 10.00 -39.75 -0.40 -2.14 16 25 C -0.08 -1.35 9.97 -39.27 -0.39 -1.75 16 26 C -0.07 -1.21 4.48 -103.79 -0.47 -1.68 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.53 8.07 -51.93 -0.42 1.11 16 33 H 0.08 1.48 7.47 -51.93 -0.39 1.09 16 34 H 0.04 0.95 4.51 -51.93 -0.23 0.72 16 35 H 0.04 0.85 8.03 -51.93 -0.42 0.43 16 36 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 37 H 0.12 2.30 6.01 -51.93 -0.31 1.99 16 38 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 39 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 40 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 358.99 15.07 5.41 5.41 Total: -1.00 -29.60 358.99 -9.66 -39.26 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -5.90 Total: 4.88 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -1.44 Total: -4.10 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.31 Total: -35.07 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.53 Total: -19.71 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.62 kcal Atomic # 16 Polarization: -2.81 SS G_CDS: -2.48 Total: -5.29 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.60 -9.66 -39.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079909859.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.575 kcal (2) G-P(sol) polarization free energy of solvation -29.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds