Wall clock time and date at job start Sat Apr 11 2020 00:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99771 * 2 1 4 4 C 1.53009 * 109.47062 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46845 * 64.99635 * 4 3 2 6 6 C 1.46506 * 119.99680 * 90.00423 * 5 4 3 7 7 C 1.50701 * 109.47002 * 96.09691 * 6 5 4 8 8 H 1.07994 * 120.00088 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99702 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99990 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99944 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.46850 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47028 * 120.00142 * 11 9 7 14 14 H 1.48501 * 109.47085 * 240.00497 * 11 9 7 15 15 C 1.34773 * 120.00200 * 269.99569 * 5 4 3 16 16 O 1.21280 * 119.99990 * 3.66364 * 15 5 4 17 17 C 1.50705 * 120.00155 * 183.65736 * 15 5 4 18 18 H 1.09001 * 109.25819 * 49.77217 * 17 15 5 19 19 C 1.54135 * 109.27164 * 290.26718 * 17 15 5 20 20 S 1.83100 * 101.17628 * 267.89949 * 19 17 15 21 21 C 1.77437 * 96.58680 * 335.12515 * 20 19 17 22 22 C 1.38815 * 130.57037 * 195.48431 * 21 20 19 23 23 C 1.38025 * 120.16122 * 179.72368 * 22 21 20 24 24 C 1.38321 * 119.29016 * 0.02562 * 23 22 21 25 25 C 1.37703 * 120.54349 * 0.08157 * 24 23 22 26 26 C 1.38889 * 108.27555 * 15.41419 * 21 20 19 27 27 H 1.09005 * 109.47169 * 300.00024 * 1 2 3 28 28 H 1.08993 * 109.47138 * 60.00015 * 1 2 3 29 29 H 1.08999 * 109.47249 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47221 * 60.00326 * 3 2 1 31 31 H 1.08999 * 109.47200 * 299.99742 * 3 2 1 32 32 H 1.08999 * 109.46943 * 184.99927 * 4 3 2 33 33 H 1.09000 * 109.46890 * 305.00205 * 4 3 2 34 34 H 1.09000 * 109.46817 * 216.09603 * 6 5 4 35 35 H 1.08998 * 109.47209 * 336.09566 * 6 5 4 36 36 H 0.97002 * 119.99862 * 179.97438 * 10 9 7 37 37 H 1.09004 * 111.09474 * 25.83082 * 19 17 15 38 38 H 1.08999 * 111.10089 * 149.91806 * 19 17 15 39 39 H 1.07996 * 119.91854 * 359.74835 * 22 21 20 40 40 H 1.07997 * 120.35640 * 180.02562 * 23 22 21 41 41 H 1.08001 * 119.72694 * 180.12429 * 24 23 22 42 42 H 1.08000 * 119.46891 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.2863 1.4007 -2.4148 7 6 5.7704 1.6570 -2.4669 8 1 6.4174 1.2392 -1.7098 9 6 6.3022 2.4250 -3.4810 10 7 5.5142 2.9342 -4.4026 11 14 8.1420 2.7421 -3.5459 12 1 8.8020 2.0624 -2.4025 13 1 8.6909 2.2124 -4.8200 14 1 8.3955 4.2032 -3.4672 15 6 4.0949 -0.7755 -1.3355 16 8 3.7746 -1.4720 -0.3957 17 6 4.6261 -1.4083 -2.5959 18 1 5.5510 -0.9100 -2.8862 19 6 3.5866 -1.2481 -3.7227 20 16 2.6383 -2.8053 -3.5548 21 6 3.9312 -3.7495 -2.7897 22 6 4.0638 -5.1197 -2.6110 23 6 5.1799 -5.6320 -1.9809 24 6 6.1604 -4.7662 -1.5312 25 6 6.0276 -3.4068 -1.7066 26 6 4.9062 -2.8685 -2.3400 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.9785 2.1766 0.0889 33 1 3.8514 0.5682 0.8409 34 1 3.9739 0.8885 -3.3249 35 1 3.7564 2.3495 -2.3317 36 1 5.8883 3.4748 -5.1158 37 1 2.9494 -0.3811 -3.5482 38 1 4.0708 -1.1870 -4.6974 39 1 3.2921 -5.7865 -2.9661 40 1 5.2865 -6.6975 -1.8405 41 1 7.0375 -5.1596 -1.0390 42 1 6.8036 -2.7466 -1.3482 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079909859.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:44 Heat of formation + Delta-G solvation = -58.834248 kcal Electronic energy + Delta-G solvation = -25748.780188 eV Core-core repulsion = 22205.772948 eV Total energy + Delta-G solvation = -3543.007240 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.38052 -39.79235 -38.58744 -36.68906 -35.48633 -34.55679 -31.80893 -31.51680 -30.18523 -28.86318 -27.22483 -26.11924 -24.83147 -23.99398 -23.70325 -22.19088 -20.00376 -18.79692 -18.66581 -17.89365 -17.57110 -17.07035 -16.65206 -16.56028 -16.42065 -16.10500 -15.82057 -15.71926 -15.34896 -14.69914 -14.48020 -14.36543 -13.93324 -13.89759 -13.78232 -13.47294 -13.33999 -13.12556 -12.98945 -12.94806 -12.64527 -12.51652 -12.40115 -12.06547 -12.01337 -11.87916 -11.63678 -11.22072 -10.74806 -10.66183 -10.55768 -10.46043 -9.74747 -9.41171 -8.40824 -8.19939 -6.33731 0.20821 0.38051 0.57534 1.19845 1.39816 1.44693 1.53414 1.82068 2.25443 2.42950 2.77716 2.98234 3.10253 3.36952 3.55213 3.77898 3.93893 4.14739 4.17696 4.19735 4.28619 4.40049 4.41875 4.46942 4.51707 4.53886 4.56596 4.61081 4.64611 4.81313 4.83248 4.90631 4.96831 5.02659 5.22588 5.32918 5.42870 5.54246 5.66410 5.86902 5.98713 6.06819 6.35826 6.57855 6.83191 7.33701 7.47176 8.85073 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.009462 B = 0.006160 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.619302 B = 4544.012300 C = 6237.712698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.400 6.400 3 C 0.050 3.950 4 C 0.117 3.883 5 N -0.597 5.597 6 C 0.242 3.758 7 C -0.543 4.543 8 H 0.052 0.948 9 C 0.028 3.972 10 N -0.915 5.915 11 Si 0.949 3.051 12 H -0.272 1.272 13 H -0.279 1.279 14 H -0.279 1.279 15 C 0.532 3.468 16 O -0.560 6.560 17 C -0.073 4.073 18 H 0.116 0.884 19 C -0.060 4.060 20 S -0.164 6.164 21 C -0.086 4.086 22 C -0.100 4.100 23 C -0.096 4.096 24 C -0.119 4.119 25 C -0.102 4.102 26 C -0.096 4.096 27 H 0.056 0.944 28 H 0.041 0.959 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.039 0.961 35 H 0.025 0.975 36 H 0.268 0.732 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.144 0.856 40 H 0.170 0.830 41 H 0.157 0.843 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.638 -9.790 3.829 11.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.319 6.319 3 C -0.028 4.028 4 C -0.006 4.006 5 N -0.328 5.328 6 C 0.121 3.879 7 C -0.582 4.582 8 H 0.070 0.930 9 C -0.173 4.173 10 N -0.554 5.554 11 Si 0.775 3.225 12 H -0.196 1.196 13 H -0.204 1.204 14 H -0.205 1.205 15 C 0.320 3.680 16 O -0.439 6.439 17 C -0.095 4.095 18 H 0.134 0.866 19 C -0.208 4.208 20 S 0.078 5.922 21 C -0.198 4.198 22 C -0.124 4.124 23 C -0.115 4.115 24 C -0.138 4.138 25 C -0.122 4.122 26 C -0.101 4.101 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.043 0.957 36 H 0.077 0.923 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.162 0.838 40 H 0.187 0.813 41 H 0.174 0.826 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.990 -10.357 3.768 12.098 hybrid contribution 1.900 1.489 0.042 2.415 sum -3.090 -8.868 3.810 10.134 Atomic orbital electron populations 1.22817 0.80568 1.02888 1.00450 1.88113 1.20493 1.27913 1.95410 1.22997 0.93787 0.85039 1.00979 1.21504 0.92955 0.99263 0.86838 1.48050 1.65060 1.05641 1.14099 1.19357 0.95147 0.90025 0.83388 1.21660 0.93376 1.32363 1.10798 0.92991 1.25542 1.01706 0.95073 0.94971 1.69994 1.36592 1.34485 1.14326 0.85637 0.80835 0.77971 0.78059 1.19599 1.20443 1.20514 1.20000 0.77418 0.82289 0.88324 1.90609 1.50647 1.62324 1.40299 1.20638 1.01293 0.93541 0.94030 0.86569 1.24308 0.98261 0.96863 1.01378 1.85636 1.20649 1.09862 1.76087 1.22219 0.96376 0.97478 1.03773 1.20737 0.99829 0.91132 1.00672 1.21496 0.92311 1.01459 0.96249 1.21297 1.00730 0.91780 1.00039 1.21028 0.96327 0.96862 0.97991 1.20428 0.96639 0.92129 1.00921 0.92572 0.94071 0.89885 0.90238 0.93579 0.87939 0.91216 0.94287 0.95689 0.92311 0.86940 0.86611 0.83815 0.81270 0.82563 0.86373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.40 -14.55 9.34 -137.72 -1.29 -15.84 16 3 C 0.05 1.58 6.28 71.99 0.45 2.04 16 4 C 0.12 4.28 5.82 86.38 0.50 4.79 16 5 N -0.60 -25.15 2.45 -826.12 -2.03 -27.17 16 6 C 0.24 11.04 4.71 85.63 0.40 11.44 16 7 C -0.54 -26.92 8.27 25.60 0.21 -26.70 16 8 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 9 C 0.03 1.41 5.46 84.66 0.46 1.87 16 10 N -0.91 -48.10 13.29 21.45 0.28 -47.82 16 11 Si 0.95 40.36 29.54 68.60 2.03 42.39 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 13 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 14 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 15 C 0.53 23.17 6.43 87.66 0.56 23.74 16 16 O -0.56 -26.82 14.70 8.24 0.12 -26.70 16 17 C -0.07 -2.92 2.20 -11.85 -0.03 -2.94 16 18 H 0.12 4.93 6.92 -2.39 -0.02 4.92 16 19 C -0.06 -2.23 5.84 72.37 0.42 -1.81 16 20 S -0.16 -5.82 23.05 -56.49 -1.30 -7.12 16 21 C -0.09 -3.00 6.48 22.56 0.15 -2.85 16 22 C -0.10 -2.78 10.05 22.36 0.22 -2.55 16 23 C -0.10 -2.18 10.08 22.24 0.22 -1.95 16 24 C -0.12 -2.98 10.00 22.16 0.22 -2.76 16 25 C -0.10 -3.35 9.97 22.47 0.22 -3.13 16 26 C -0.10 -3.56 4.48 -19.33 -0.09 -3.65 16 27 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.10 3.43 8.07 -2.39 -0.02 3.41 16 33 H 0.07 2.66 7.47 -2.39 -0.02 2.65 16 34 H 0.04 1.83 4.51 -2.39 -0.01 1.82 16 35 H 0.03 1.20 8.03 -2.39 -0.02 1.18 16 36 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 37 H 0.11 4.37 6.01 -2.38 -0.01 4.36 16 38 H 0.12 3.99 8.14 -2.39 -0.02 3.97 16 39 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 40 H 0.17 2.39 8.06 -2.91 -0.02 2.36 16 41 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 42 H 0.12 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -63.97 358.99 4.03 -59.94 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 1.02 Total: 24.78 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 5.19 Total: -2.45 kcal Atomic # 7 Polarization: -73.25 SS G_CDS: -1.74 Total: -74.99 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -1.17 Total: -42.54 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Atomic # 16 Polarization: -5.82 SS G_CDS: -1.30 Total: -7.12 kcal Total: -63.97 4.03 -59.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079909859.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.101 kcal (2) G-P(sol) polarization free energy of solvation -63.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds