Wall clock time and date at job start Sat Apr 11 2020 00:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42103 * 109.46819 * 2 1 4 4 C 1.76199 * 102.99930 * 109.05497 * 2 1 3 5 5 C 1.38360 * 119.85407 * 89.99956 * 4 2 1 6 6 C 1.37959 * 120.14366 * 179.97438 * 5 4 2 7 7 C 1.39577 * 119.85677 * 0.02602 * 6 5 4 8 8 C 1.47845 * 120.14443 * 179.97438 * 7 6 5 9 9 O 1.21548 * 120.00188 * 22.60707 * 8 7 6 10 10 N 1.34780 * 119.99385 * 202.60678 * 8 7 6 11 11 C 1.46500 * 119.99609 * 182.02465 * 10 8 7 12 12 C 1.50696 * 109.47232 * 270.00143 * 11 10 8 13 13 H 1.08003 * 119.99999 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00281 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00191 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99813 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47426 * 90.00116 * 16 14 12 18 18 H 1.48502 * 109.47168 * 210.00057 * 16 14 12 19 19 H 1.48502 * 109.47208 * 329.99569 * 16 14 12 20 20 C 1.46494 * 120.00399 * 2.02166 * 10 8 7 21 21 C 1.52998 * 109.47363 * 259.87184 * 20 10 8 22 22 C 1.53004 * 117.49905 * 243.62121 * 21 20 10 23 23 C 1.52996 * 59.99997 * 252.51200 * 22 21 20 24 24 C 1.39581 * 119.70809 * 0.24946 * 7 6 5 25 25 C 1.37961 * 119.84968 * 359.47179 * 24 7 6 26 26 H 1.09003 * 109.47144 * 310.94621 * 1 2 3 27 27 H 1.08995 * 109.46953 * 70.94522 * 1 2 3 28 28 H 1.08999 * 109.47280 * 190.94875 * 1 2 3 29 29 H 1.08003 * 119.92806 * 0.02562 * 5 4 2 30 30 H 1.08002 * 120.07350 * 179.97438 * 6 5 4 31 31 H 1.09003 * 109.47327 * 29.99742 * 11 10 8 32 32 H 1.08999 * 109.47079 * 149.99730 * 11 10 8 33 33 H 0.96997 * 120.00282 * 180.02562 * 15 14 12 34 34 H 1.09000 * 109.47075 * 139.86831 * 20 10 8 35 35 H 1.08995 * 109.47204 * 19.87654 * 20 10 8 36 36 H 1.09000 * 115.55166 * 29.32752 * 21 20 10 37 37 H 1.08994 * 117.49671 * 0.02562 * 22 21 20 38 38 H 1.09000 * 117.49496 * 145.02228 * 22 21 20 39 39 H 1.08998 * 117.49882 * 252.51120 * 23 22 21 40 40 H 1.09000 * 117.50168 * 107.49436 * 23 22 21 41 41 H 1.08000 * 120.07241 * 179.72416 * 24 7 6 42 42 H 1.08001 * 119.92020 * 180.27563 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2103 -0.5605 1.6228 5 6 2.3653 -1.9138 1.8653 6 6 2.6761 -2.3592 3.1335 7 6 2.8338 -1.4414 4.1731 8 6 3.1663 -1.9117 5.5347 9 8 3.6973 -2.9939 5.6912 10 7 2.8807 -1.1405 6.6025 11 6 3.2502 -1.5866 7.9481 12 6 2.1189 -2.3868 8.5404 13 1 1.2149 -2.5467 7.9716 14 6 2.2375 -2.9140 9.8089 15 7 1.2500 -3.6119 10.3260 16 14 3.8009 -2.6369 10.7930 17 1 3.6689 -1.3920 11.5918 18 1 4.0229 -3.7883 11.7041 19 1 4.9537 -2.5102 9.8656 20 6 2.2008 0.1439 6.4176 21 6 3.2273 1.2770 6.4730 22 6 3.1000 2.2906 7.6120 23 6 2.7307 2.6949 6.1834 24 6 2.6704 -0.0779 3.9229 25 6 2.3653 0.3546 2.6488 26 1 -0.3633 0.6735 0.7762 27 1 -0.3633 0.3355 -0.9713 28 1 -0.3634 -1.0089 0.1952 29 1 2.2434 -2.6230 1.0599 30 1 2.7964 -3.4159 3.3216 31 1 4.1442 -2.2078 7.8923 32 1 3.4495 -0.7187 8.5767 33 1 1.3333 -3.9825 11.2185 34 1 1.4639 0.2821 7.2088 35 1 1.7003 0.1540 5.4494 36 1 4.2322 1.0178 6.1396 37 1 2.2851 2.1499 8.3221 38 1 4.0212 2.6983 8.0282 39 1 3.4090 3.3686 5.6597 40 1 1.6727 2.8205 5.9533 41 1 2.7867 0.6371 4.7239 42 1 2.2431 1.4097 2.4530 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103438109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:52 Heat of formation + Delta-G solvation = 18.956467 kcal Electronic energy + Delta-G solvation = -24819.220984 eV Core-core repulsion = 21279.587003 eV Total energy + Delta-G solvation = -3539.633981 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.38408 -38.07789 -37.48416 -35.94095 -34.65209 -32.73578 -31.43675 -31.04503 -29.07520 -28.38570 -26.74357 -24.05381 -22.96980 -22.24234 -21.89087 -20.89117 -19.13002 -18.27671 -17.20171 -16.93829 -16.58933 -16.00464 -15.47014 -15.08814 -14.97490 -14.74188 -14.25326 -14.21248 -13.96153 -13.75906 -13.56455 -13.43736 -12.99931 -12.67587 -12.51398 -12.28865 -12.20594 -11.79463 -11.70566 -11.60471 -11.48624 -11.04466 -10.79071 -10.59769 -10.48128 -10.42689 -10.14222 -9.97027 -9.59751 -9.34371 -9.09919 -8.88922 -8.62303 -8.60947 -7.85117 -6.11827 -4.10887 0.54647 1.30703 1.62429 2.42406 3.11801 3.24560 3.32320 3.37204 3.54468 3.64634 3.76271 3.98510 4.36932 4.63015 4.71948 4.86470 4.87525 4.90066 4.93911 4.99579 5.07583 5.21555 5.35019 5.41908 5.45222 5.60776 5.62680 5.67850 5.69420 5.86365 5.91865 5.96122 6.09184 6.14541 6.15834 6.30238 6.34707 6.65484 6.79920 6.91919 7.22330 7.56621 8.10100 8.41838 8.79252 8.91572 9.47944 11.01482 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.017696 B = 0.003552 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.878554 B = 7880.602350 C = 8820.597066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.498 4.498 2 S 1.331 4.669 3 O -0.859 6.859 4 C -0.451 4.451 5 C -0.055 4.055 6 C -0.083 4.083 7 C -0.083 4.083 8 C 0.543 3.457 9 O -0.528 6.528 10 N -0.577 5.577 11 C 0.217 3.783 12 C -0.529 4.529 13 H 0.074 0.926 14 C 0.074 3.926 15 N -0.896 5.896 16 Si 0.874 3.126 17 H -0.275 1.275 18 H -0.283 1.283 19 H -0.264 1.264 20 C 0.111 3.889 21 C -0.181 4.181 22 C -0.168 4.168 23 C -0.180 4.180 24 C -0.140 4.140 25 C -0.064 4.064 26 H 0.082 0.918 27 H 0.104 0.896 28 H 0.112 0.888 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.042 0.958 32 H 0.030 0.970 33 H 0.265 0.735 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.171 0.829 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.216 8.615 -20.375 22.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 1.528 4.472 3 O -0.854 6.854 4 C -0.548 4.548 5 C -0.074 4.074 6 C -0.103 4.103 7 C -0.086 4.086 8 C 0.330 3.670 9 O -0.406 6.406 10 N -0.306 5.306 11 C 0.097 3.903 12 C -0.568 4.568 13 H 0.092 0.908 14 C -0.129 4.129 15 N -0.535 5.535 16 Si 0.700 3.300 17 H -0.201 1.201 18 H -0.209 1.209 19 H -0.188 1.188 20 C -0.013 4.013 21 C -0.201 4.201 22 C -0.204 4.204 23 C -0.218 4.218 24 C -0.159 4.159 25 C -0.083 4.083 26 H 0.101 0.899 27 H 0.123 0.877 28 H 0.130 0.870 29 H 0.158 0.842 30 H 0.158 0.842 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.126 0.874 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.187 0.813 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.049 8.197 -20.801 22.383 hybrid contribution -0.238 1.338 2.560 2.898 sum 0.811 9.535 -18.241 20.599 Atomic orbital electron populations 1.27762 1.22360 1.08135 1.07207 1.69441 0.86037 0.99500 0.92233 1.93102 1.73166 1.37274 1.81888 1.27735 1.11231 0.99768 1.16085 1.20774 0.96304 0.93486 0.96848 1.21421 0.96683 1.00437 0.91781 1.20484 0.99148 0.94171 0.94823 1.18225 0.80095 0.84713 0.83999 1.90761 1.43300 1.20665 1.85868 1.47759 1.56677 1.18183 1.07985 1.19708 0.97566 0.95355 0.77656 1.21296 1.01916 1.32951 1.00629 0.90750 1.24835 0.96230 0.94472 0.97328 1.69891 1.31768 1.35182 1.16636 0.86879 0.84444 0.78174 0.80473 1.20052 1.20879 1.18822 1.21921 0.93662 0.81802 1.03887 1.22862 1.01347 0.90739 1.05129 1.23023 1.03525 1.02494 0.91406 1.23001 1.02056 0.96883 0.99818 1.22858 0.98231 0.96329 0.98487 1.21061 0.95826 0.99393 0.91996 0.89905 0.87731 0.86950 0.84190 0.84194 0.94034 0.95224 0.92521 0.89696 0.88245 0.87405 0.88107 0.88843 0.88683 0.88524 0.81265 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -3.18 10.70 101.05 1.08 -2.09 16 2 S 1.33 9.68 14.18 -107.50 -1.52 8.15 16 3 O -0.86 -11.81 16.88 -35.23 -0.59 -12.40 16 4 C -0.45 -4.79 5.62 -39.49 -0.22 -5.01 16 5 C -0.05 -0.55 9.73 -39.64 -0.39 -0.93 16 6 C -0.08 -1.17 9.59 -39.18 -0.38 -1.54 16 7 C -0.08 -1.38 5.62 -104.97 -0.59 -1.97 16 8 C 0.54 11.48 7.53 -12.33 -0.09 11.39 16 9 O -0.53 -13.15 16.16 5.32 0.09 -13.06 16 10 N -0.58 -12.05 2.47 -176.18 -0.44 -12.49 16 11 C 0.22 5.32 4.21 -5.20 -0.02 5.30 16 12 C -0.53 -15.19 9.94 -34.44 -0.34 -15.53 16 13 H 0.07 2.34 8.06 -52.48 -0.42 1.92 16 14 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 15 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 16 Si 0.87 21.49 27.47 -169.99 -4.67 16.82 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 20 C 0.11 1.82 5.12 -4.05 -0.02 1.80 16 21 C -0.18 -2.51 4.03 -90.62 -0.37 -2.87 16 22 C -0.17 -2.10 10.18 -26.73 -0.27 -2.37 16 23 C -0.18 -1.98 9.97 -26.73 -0.27 -2.25 16 24 C -0.14 -2.02 7.54 -39.18 -0.30 -2.32 16 25 C -0.06 -0.83 9.42 -39.64 -0.37 -1.21 16 26 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 27 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.11 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.14 0.70 8.06 -52.48 -0.42 0.27 16 30 H 0.14 1.95 7.82 -52.49 -0.41 1.54 16 31 H 0.04 1.10 6.51 -51.93 -0.34 0.76 16 32 H 0.03 0.68 7.50 -51.93 -0.39 0.30 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.08 1.46 7.87 -51.93 -0.41 1.05 16 35 H 0.10 1.48 4.26 -51.93 -0.22 1.26 16 36 H 0.11 1.56 8.13 -51.93 -0.42 1.13 16 37 H 0.10 1.30 8.03 -51.93 -0.42 0.88 16 38 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.17 2.31 2.33 -52.49 -0.12 2.19 16 42 H 0.13 1.67 7.44 -52.49 -0.39 1.28 16 LS Contribution 359.72 15.07 5.42 5.42 Total: -1.00 -39.21 359.72 -9.25 -48.46 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.67 Total: 3.45 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -2.64 Total: -17.57 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.34 Total: -39.27 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.51 Total: -25.46 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Atomic # 16 Polarization: 9.68 SS G_CDS: -1.52 Total: 8.15 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -39.21 -9.25 -48.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103438109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.414 kcal (2) G-P(sol) polarization free energy of solvation -39.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds