Wall clock time and date at job start Sat Apr 11 2020 00:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42103 * 109.46819 * 2 1 4 4 C 1.76199 * 102.99930 * 109.05497 * 2 1 3 5 5 C 1.38360 * 119.85407 * 89.99956 * 4 2 1 6 6 C 1.37959 * 120.14366 * 179.97438 * 5 4 2 7 7 C 1.39577 * 119.85677 * 0.02602 * 6 5 4 8 8 C 1.47845 * 120.14443 * 179.97438 * 7 6 5 9 9 O 1.21548 * 120.00188 * 22.60707 * 8 7 6 10 10 N 1.34780 * 119.99385 * 202.60678 * 8 7 6 11 11 C 1.46500 * 119.99609 * 182.02465 * 10 8 7 12 12 C 1.50696 * 109.47232 * 270.00143 * 11 10 8 13 13 H 1.08003 * 119.99999 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00281 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00191 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99813 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47426 * 90.00116 * 16 14 12 18 18 H 1.48502 * 109.47168 * 210.00057 * 16 14 12 19 19 H 1.48502 * 109.47208 * 329.99569 * 16 14 12 20 20 C 1.46494 * 120.00399 * 2.02166 * 10 8 7 21 21 C 1.52998 * 109.47363 * 259.87184 * 20 10 8 22 22 C 1.53004 * 117.49905 * 243.62121 * 21 20 10 23 23 C 1.52996 * 59.99997 * 252.51200 * 22 21 20 24 24 C 1.39581 * 119.70809 * 0.24946 * 7 6 5 25 25 C 1.37961 * 119.84968 * 359.47179 * 24 7 6 26 26 H 1.09003 * 109.47144 * 310.94621 * 1 2 3 27 27 H 1.08995 * 109.46953 * 70.94522 * 1 2 3 28 28 H 1.08999 * 109.47280 * 190.94875 * 1 2 3 29 29 H 1.08003 * 119.92806 * 0.02562 * 5 4 2 30 30 H 1.08002 * 120.07350 * 179.97438 * 6 5 4 31 31 H 1.09003 * 109.47327 * 29.99742 * 11 10 8 32 32 H 1.08999 * 109.47079 * 149.99730 * 11 10 8 33 33 H 0.96997 * 120.00282 * 180.02562 * 15 14 12 34 34 H 1.09000 * 109.47075 * 139.86831 * 20 10 8 35 35 H 1.08995 * 109.47204 * 19.87654 * 20 10 8 36 36 H 1.09000 * 115.55166 * 29.32752 * 21 20 10 37 37 H 1.08994 * 117.49671 * 0.02562 * 22 21 20 38 38 H 1.09000 * 117.49496 * 145.02228 * 22 21 20 39 39 H 1.08998 * 117.49882 * 252.51120 * 23 22 21 40 40 H 1.09000 * 117.50168 * 107.49436 * 23 22 21 41 41 H 1.08000 * 120.07241 * 179.72416 * 24 7 6 42 42 H 1.08001 * 119.92020 * 180.27563 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2103 -0.5605 1.6228 5 6 2.3653 -1.9138 1.8653 6 6 2.6761 -2.3592 3.1335 7 6 2.8338 -1.4414 4.1731 8 6 3.1663 -1.9117 5.5347 9 8 3.6973 -2.9939 5.6912 10 7 2.8807 -1.1405 6.6025 11 6 3.2502 -1.5866 7.9481 12 6 2.1189 -2.3868 8.5404 13 1 1.2149 -2.5467 7.9716 14 6 2.2375 -2.9140 9.8089 15 7 1.2500 -3.6119 10.3260 16 14 3.8009 -2.6369 10.7930 17 1 3.6689 -1.3920 11.5918 18 1 4.0229 -3.7883 11.7041 19 1 4.9537 -2.5102 9.8656 20 6 2.2008 0.1439 6.4176 21 6 3.2273 1.2770 6.4730 22 6 3.1000 2.2906 7.6120 23 6 2.7307 2.6949 6.1834 24 6 2.6704 -0.0779 3.9229 25 6 2.3653 0.3546 2.6488 26 1 -0.3633 0.6735 0.7762 27 1 -0.3633 0.3355 -0.9713 28 1 -0.3634 -1.0089 0.1952 29 1 2.2434 -2.6230 1.0599 30 1 2.7964 -3.4159 3.3216 31 1 4.1442 -2.2078 7.8923 32 1 3.4495 -0.7187 8.5767 33 1 1.3333 -3.9825 11.2185 34 1 1.4639 0.2821 7.2088 35 1 1.7003 0.1540 5.4494 36 1 4.2322 1.0178 6.1396 37 1 2.2851 2.1499 8.3221 38 1 4.0212 2.6983 8.0282 39 1 3.4090 3.3686 5.6597 40 1 1.6727 2.8205 5.9533 41 1 2.7867 0.6371 4.7239 42 1 2.2431 1.4097 2.4530 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103438109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:51 Heat of formation + Delta-G solvation = -8.897897 kcal Electronic energy + Delta-G solvation = -24820.428840 eV Core-core repulsion = 21279.587003 eV Total energy + Delta-G solvation = -3540.841837 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.74851 -39.28986 -38.77927 -36.85016 -36.28159 -34.77519 -32.78633 -32.09701 -30.21731 -29.55365 -28.20525 -25.62189 -24.03379 -23.50690 -23.19607 -22.08262 -20.57500 -19.17335 -19.10993 -18.50942 -17.69695 -17.27566 -16.65848 -16.46712 -16.04452 -15.91280 -15.73104 -15.42251 -15.20349 -14.98045 -14.68449 -14.51650 -14.35138 -13.86305 -13.81600 -13.69510 -13.32242 -13.19832 -13.07331 -12.78197 -12.64398 -12.48273 -12.40349 -12.13137 -11.88629 -11.82846 -11.45586 -11.37149 -11.05937 -10.89174 -10.85861 -10.26735 -9.93289 -9.60260 -9.34132 -8.38807 -6.44562 -0.50083 0.29883 0.91022 1.27899 1.32251 1.43170 1.60676 1.88886 2.06315 2.26910 2.63543 2.76992 2.94681 3.00573 3.37114 3.69171 3.76632 3.83030 3.96935 4.03629 4.26453 4.33474 4.34174 4.37851 4.43670 4.58573 4.62234 4.65661 4.69831 4.75268 4.83981 4.95833 4.97639 5.07602 5.13935 5.16202 5.22241 5.24472 5.30429 5.38568 5.49329 5.81333 6.16422 6.47663 6.55727 7.09646 7.23329 8.78199 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.017696 B = 0.003552 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.878554 B = 7880.602350 C = 8820.597066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.499 4.499 2 S 1.411 4.589 3 O -0.918 6.918 4 C -0.449 4.449 5 C -0.033 4.033 6 C -0.097 4.097 7 C -0.115 4.115 8 C 0.534 3.466 9 O -0.583 6.583 10 N -0.584 5.584 11 C 0.229 3.771 12 C -0.539 4.539 13 H 0.027 0.973 14 C 0.016 3.984 15 N -0.942 5.942 16 Si 0.946 3.054 17 H -0.250 1.250 18 H -0.278 1.278 19 H -0.258 1.258 20 C 0.111 3.889 21 C -0.198 4.198 22 C -0.172 4.172 23 C -0.151 4.151 24 C -0.142 4.142 25 C -0.077 4.077 26 H 0.063 0.937 27 H 0.124 0.876 28 H 0.139 0.861 29 H 0.201 0.799 30 H 0.133 0.867 31 H 0.021 0.979 32 H 0.049 0.951 33 H 0.270 0.730 34 H 0.070 0.930 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.173 0.827 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.469 10.270 -22.855 25.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 1.608 4.392 3 O -0.914 6.914 4 C -0.543 4.543 5 C -0.051 4.051 6 C -0.117 4.117 7 C -0.118 4.118 8 C 0.324 3.676 9 O -0.464 6.464 10 N -0.312 5.312 11 C 0.107 3.893 12 C -0.577 4.577 13 H 0.045 0.955 14 C -0.183 4.183 15 N -0.582 5.582 16 Si 0.768 3.232 17 H -0.174 1.174 18 H -0.203 1.203 19 H -0.182 1.182 20 C -0.011 4.011 21 C -0.218 4.218 22 C -0.209 4.209 23 C -0.188 4.188 24 C -0.161 4.161 25 C -0.096 4.096 26 H 0.082 0.918 27 H 0.143 0.857 28 H 0.157 0.843 29 H 0.218 0.782 30 H 0.150 0.850 31 H 0.039 0.961 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.133 0.867 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.123 0.877 39 H 0.133 0.867 40 H 0.127 0.873 41 H 0.190 0.810 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.299 9.901 -23.278 25.330 hybrid contribution -0.505 0.799 3.133 3.273 sum 0.795 10.700 -20.145 22.824 Atomic orbital electron populations 1.27777 1.20619 1.09545 1.07774 1.68811 0.85768 0.96398 0.88264 1.92985 1.75680 1.40667 1.82087 1.28384 1.08956 0.99800 1.17208 1.21347 0.93104 0.94280 0.96411 1.21628 0.97220 0.99851 0.93010 1.20225 1.03031 0.95802 0.92764 1.19041 0.78883 0.83925 0.85800 1.90699 1.45819 1.22925 1.86977 1.47816 1.56854 1.19821 1.06751 1.19330 0.95003 0.95056 0.79869 1.21479 1.01590 1.33931 1.00738 0.95459 1.25807 1.00088 0.93878 0.98512 1.70039 1.34266 1.36448 1.17423 0.85736 0.79488 0.79149 0.78782 1.17424 1.20349 1.18171 1.22128 0.94067 0.80760 1.04151 1.22642 1.00341 0.91147 1.07635 1.23115 1.03991 1.01862 0.91954 1.23115 1.03135 0.94211 0.98331 1.22793 0.98500 0.95265 0.99528 1.21194 0.96313 1.00061 0.91991 0.91806 0.85731 0.84251 0.78213 0.84957 0.96102 0.93293 0.92104 0.91114 0.86730 0.88077 0.88762 0.87660 0.86693 0.87342 0.81008 0.85207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -4.24 10.70 113.37 1.21 -3.03 16 2 S 1.41 15.25 14.18 -56.49 -0.80 14.45 16 3 O -0.92 -22.95 16.88 -148.98 -2.52 -25.47 16 4 C -0.45 -8.19 5.62 22.33 0.13 -8.07 16 5 C -0.03 -0.55 9.73 22.23 0.22 -0.33 16 6 C -0.10 -2.68 9.59 22.53 0.22 -2.47 16 7 C -0.12 -3.95 5.62 -20.09 -0.11 -4.06 16 8 C 0.53 24.00 7.53 86.79 0.65 24.66 16 9 O -0.58 -31.06 16.16 -3.87 -0.06 -31.13 16 10 N -0.58 -25.77 2.47 -829.60 -2.05 -27.82 16 11 C 0.23 11.71 4.21 85.63 0.36 12.07 16 12 C -0.54 -32.64 9.94 25.60 0.25 -32.39 16 13 H 0.03 1.85 8.06 -2.91 -0.02 1.82 16 14 C 0.02 0.94 5.47 84.65 0.46 1.40 16 15 N -0.94 -60.05 13.96 21.45 0.30 -59.75 16 16 Si 0.95 45.10 27.47 68.60 1.88 46.99 16 17 H -0.25 -10.90 7.11 99.48 0.71 -10.20 16 18 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 19 H -0.26 -11.95 6.54 99.48 0.65 -11.30 16 20 C 0.11 3.77 5.12 86.38 0.44 4.21 16 21 C -0.20 -5.42 4.03 -10.79 -0.04 -5.46 16 22 C -0.17 -4.11 10.18 30.59 0.31 -3.79 16 23 C -0.15 -3.01 9.97 30.59 0.31 -2.70 16 24 C -0.14 -4.09 7.54 22.53 0.17 -3.92 16 25 C -0.08 -1.88 9.42 22.23 0.21 -1.68 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.20 0.84 8.06 -2.91 -0.02 0.82 16 30 H 0.13 3.79 7.82 -2.91 -0.02 3.77 16 31 H 0.02 1.15 6.51 -2.39 -0.02 1.14 16 32 H 0.05 2.29 7.50 -2.39 -0.02 2.27 16 33 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 34 H 0.07 2.55 7.87 -2.39 -0.02 2.53 16 35 H 0.12 3.51 4.26 -2.39 -0.01 3.50 16 36 H 0.10 2.93 8.13 -2.39 -0.02 2.91 16 37 H 0.09 2.37 8.03 -2.39 -0.02 2.35 16 38 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.17 4.70 2.33 -2.91 -0.01 4.69 16 42 H 0.13 3.17 7.44 -2.91 -0.02 3.15 16 Total: -1.00 -92.45 359.72 2.52 -89.93 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.98 Total: 18.37 kcal Atomic # 6 Polarization: -30.35 SS G_CDS: 4.78 Total: -25.57 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -1.75 Total: -87.57 kcal Atomic # 8 Polarization: -54.01 SS G_CDS: -2.58 Total: -56.59 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.99 kcal Atomic # 16 Polarization: 15.25 SS G_CDS: -0.80 Total: 14.45 kcal Total: -92.45 2.52 -89.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103438109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.032 kcal (2) G-P(sol) polarization free energy of solvation -92.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds