Wall clock time and date at job start Sat Apr 11 2020 00:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 O 1.42103 * 109.46879 * 2 1 4 4 C 1.76195 * 103.00253 * 250.94318 * 2 1 3 5 5 C 1.38360 * 119.85529 * 89.99760 * 4 2 1 6 6 C 1.37959 * 120.14366 * 179.97438 * 5 4 2 7 7 C 1.39577 * 119.85677 * 0.02602 * 6 5 4 8 8 C 1.47845 * 120.14443 * 179.97438 * 7 6 5 9 9 O 1.21548 * 120.00188 * 22.60707 * 8 7 6 10 10 N 1.34780 * 119.99385 * 202.60678 * 8 7 6 11 11 C 1.46500 * 119.99609 * 182.02465 * 10 8 7 12 12 C 1.50696 * 109.47232 * 270.00143 * 11 10 8 13 13 H 1.08003 * 119.99999 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00281 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00191 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99813 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47426 * 90.00116 * 16 14 12 18 18 H 1.48502 * 109.47168 * 210.00057 * 16 14 12 19 19 H 1.48502 * 109.47208 * 329.99569 * 16 14 12 20 20 C 1.46494 * 120.00399 * 2.02166 * 10 8 7 21 21 C 1.52998 * 109.47363 * 259.87184 * 20 10 8 22 22 C 1.53004 * 117.49905 * 243.62121 * 21 20 10 23 23 C 1.52996 * 59.99997 * 252.51200 * 22 21 20 24 24 C 1.39581 * 119.70809 * 0.24946 * 7 6 5 25 25 C 1.37961 * 119.84968 * 359.47179 * 24 7 6 26 26 H 1.09002 * 109.47534 * 169.05468 * 1 2 3 27 27 H 1.09006 * 109.47525 * 289.05893 * 1 2 3 28 28 H 1.09000 * 109.47132 * 49.05793 * 1 2 3 29 29 H 1.08003 * 119.92806 * 359.97438 * 5 4 2 30 30 H 1.08002 * 120.07350 * 179.97438 * 6 5 4 31 31 H 1.09003 * 109.47327 * 29.99742 * 11 10 8 32 32 H 1.08999 * 109.47079 * 149.99730 * 11 10 8 33 33 H 0.96997 * 120.00282 * 180.02562 * 15 14 12 34 34 H 1.09000 * 109.47075 * 139.86831 * 20 10 8 35 35 H 1.08995 * 109.47204 * 19.87654 * 20 10 8 36 36 H 1.09000 * 115.55166 * 29.32752 * 21 20 10 37 37 H 1.08994 * 117.49671 * 0.02562 * 22 21 20 38 38 H 1.09000 * 117.49496 * 145.02228 * 22 21 20 39 39 H 1.08998 * 117.49882 * 252.51120 * 23 22 21 40 40 H 1.09000 * 117.50168 * 107.49436 * 23 22 21 41 41 H 1.08000 * 120.07241 * 179.72416 * 24 7 6 42 42 H 1.08001 * 119.92020 * 180.27563 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2875 1.3398 0.0000 4 6 2.2103 -0.5605 -1.6227 5 6 2.3653 0.3545 -2.6488 6 6 2.6762 -0.0777 -3.9215 7 6 2.8339 -1.4416 -4.1729 8 6 3.1666 -1.9119 -5.5345 9 8 3.6975 -1.1570 -6.3255 10 7 2.8810 -3.1778 -5.8987 11 6 3.2506 -3.6573 -7.2327 12 6 2.1193 -3.3933 -8.1927 13 1 1.2152 -2.9165 -7.8438 14 6 2.2380 -3.7615 -9.5161 15 7 1.2505 -3.5316 -10.3537 16 14 3.8014 -4.5869 -10.1193 17 1 3.6695 -6.0594 -9.9794 18 1 4.0235 -4.2432 -11.5468 19 1 4.9542 -4.1141 -9.3113 20 6 2.2011 -4.0742 -4.9605 21 6 3.2276 -4.9999 -4.3046 22 6 3.1003 -6.5004 -4.5752 23 6 2.7310 -5.9368 -3.2016 24 6 2.6706 -2.3599 -3.1345 25 6 2.3654 -1.9139 -1.8651 26 1 -0.3634 -1.0090 -0.1951 27 1 -0.3634 0.3356 0.9714 28 1 -0.3633 0.6734 -0.7763 29 1 2.2425 1.4096 -2.4531 30 1 2.7964 0.6375 -4.7217 31 1 4.1446 -3.1341 -7.5721 32 1 3.4499 -4.7281 -7.1916 33 1 1.3338 -3.7909 -11.2847 34 1 1.4643 -4.6714 -5.4977 35 1 1.7006 -3.4846 -4.1925 36 1 4.2325 -4.5901 -4.2023 37 1 2.2855 -6.8280 -5.2207 38 1 4.0216 -7.0780 -4.6510 39 1 3.4093 -6.1435 -2.3738 40 1 1.6730 -5.8936 -2.9431 41 1 2.7869 -3.4168 -3.3234 42 1 2.2431 -2.6231 -1.0599 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103438111.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:55 Heat of formation + Delta-G solvation = 18.865916 kcal Electronic energy + Delta-G solvation = -24770.941021 eV Core-core repulsion = 21231.303113 eV Total energy + Delta-G solvation = -3539.637908 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.39054 -38.08454 -37.49904 -35.94132 -34.65986 -32.73229 -31.41911 -31.08158 -29.07623 -28.38370 -26.75316 -24.06298 -22.95950 -22.26449 -21.91044 -20.90970 -19.13668 -18.25371 -17.18963 -16.94012 -16.64852 -16.02743 -15.44527 -15.13686 -14.94400 -14.68309 -14.34099 -14.23797 -13.99021 -13.70686 -13.56513 -13.45009 -12.97806 -12.64480 -12.50342 -12.27643 -12.19749 -11.89824 -11.71835 -11.62687 -11.51748 -11.04770 -10.77966 -10.60634 -10.49477 -10.40936 -10.15274 -9.98629 -9.59823 -9.33810 -9.10895 -8.90110 -8.62504 -8.61442 -7.85533 -6.11859 -4.11028 0.54543 1.30109 1.62699 2.42130 3.11948 3.24030 3.32163 3.36907 3.53167 3.63305 3.76035 3.97751 4.36725 4.61471 4.70244 4.82275 4.85260 4.90523 4.96084 4.99572 5.06200 5.21517 5.34249 5.42185 5.43234 5.57908 5.60417 5.67341 5.69439 5.84481 5.90485 5.94799 6.07520 6.12441 6.16142 6.29221 6.34339 6.65241 6.79618 6.91918 7.22317 7.56575 8.09841 8.41732 8.79502 8.91648 9.47813 11.01481 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.017393 B = 0.003513 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.436243 B = 7969.504344 C = 8924.947981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.498 4.498 2 S 1.331 4.669 3 O -0.859 6.859 4 C -0.451 4.451 5 C -0.063 4.063 6 C -0.081 4.081 7 C -0.082 4.082 8 C 0.542 3.458 9 O -0.528 6.528 10 N -0.577 5.577 11 C 0.218 3.782 12 C -0.530 4.530 13 H 0.074 0.926 14 C 0.074 3.926 15 N -0.896 5.896 16 Si 0.874 3.126 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.264 1.264 20 C 0.110 3.890 21 C -0.182 4.182 22 C -0.170 4.170 23 C -0.178 4.178 24 C -0.143 4.143 25 C -0.056 4.056 26 H 0.112 0.888 27 H 0.104 0.896 28 H 0.082 0.918 29 H 0.129 0.871 30 H 0.136 0.864 31 H 0.041 0.959 32 H 0.030 0.970 33 H 0.265 0.735 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.174 0.826 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.203 -4.105 24.826 25.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 1.528 4.472 3 O -0.854 6.854 4 C -0.548 4.548 5 C -0.082 4.082 6 C -0.101 4.101 7 C -0.085 4.085 8 C 0.329 3.671 9 O -0.406 6.406 10 N -0.306 5.306 11 C 0.097 3.903 12 C -0.568 4.568 13 H 0.092 0.908 14 C -0.129 4.129 15 N -0.535 5.535 16 Si 0.701 3.299 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.188 1.188 20 C -0.014 4.014 21 C -0.201 4.201 22 C -0.206 4.206 23 C -0.216 4.216 24 C -0.162 4.162 25 C -0.075 4.075 26 H 0.131 0.869 27 H 0.123 0.877 28 H 0.101 0.899 29 H 0.147 0.853 30 H 0.154 0.846 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.191 0.809 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.035 -3.455 24.883 25.143 hybrid contribution -0.232 0.810 -2.416 2.559 sum 0.803 -2.645 22.468 22.637 Atomic orbital electron populations 1.27764 1.22370 1.08127 1.07231 1.69387 0.86047 0.99564 0.92201 1.93111 1.73164 1.37271 1.81874 1.27735 1.11203 0.99844 1.15980 1.21038 0.95601 0.99533 0.92035 1.21390 0.96537 0.94969 0.97197 1.20466 0.99119 0.94441 0.94513 1.18235 0.80115 0.82421 0.86324 1.90768 1.43234 1.53913 1.52662 1.47754 1.56744 1.10239 1.15912 1.19701 0.97537 0.94437 0.78587 1.21301 1.01930 1.40440 0.93165 0.90776 1.24842 0.96231 0.95390 0.96434 1.69893 1.31789 1.47371 1.04427 0.86875 0.84432 0.79912 0.78723 1.20013 1.20912 1.18826 1.21937 0.93676 0.92536 0.93206 1.22869 1.01358 0.92786 1.03087 1.23025 1.03533 0.95359 0.98730 1.23005 1.02072 1.04091 0.92415 1.22880 0.98435 1.02367 0.92472 1.20804 0.96540 0.93365 0.96801 0.86939 0.87726 0.89897 0.85289 0.84645 0.94097 0.95165 0.92521 0.89725 0.88074 0.87370 0.88159 0.88897 0.88602 0.88393 0.80920 0.84259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -3.18 10.70 101.05 1.08 -2.10 16 2 S 1.33 9.70 14.18 -107.50 -1.52 8.17 16 3 O -0.86 -12.13 16.88 -35.23 -0.59 -12.72 16 4 C -0.45 -4.79 5.62 -39.49 -0.22 -5.01 16 5 C -0.06 -0.88 9.43 -39.64 -0.37 -1.25 16 6 C -0.08 -1.31 9.59 -39.18 -0.38 -1.69 16 7 C -0.08 -1.37 5.62 -104.97 -0.59 -1.96 16 8 C 0.54 11.48 7.53 -12.33 -0.09 11.39 16 9 O -0.53 -13.46 16.16 5.32 0.09 -13.37 16 10 N -0.58 -11.74 2.47 -176.18 -0.44 -12.18 16 11 C 0.22 5.26 4.21 -5.20 -0.02 5.23 16 12 C -0.53 -15.15 9.94 -34.44 -0.34 -15.49 16 13 H 0.07 2.33 8.06 -52.48 -0.42 1.91 16 14 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 15 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 16 Si 0.87 21.40 27.47 -169.99 -4.67 16.73 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 20 C 0.11 1.66 5.12 -4.05 -0.02 1.64 16 21 C -0.18 -2.17 4.03 -90.62 -0.37 -2.54 16 22 C -0.17 -1.85 10.18 -26.73 -0.27 -2.13 16 23 C -0.18 -1.51 9.97 -26.73 -0.27 -1.77 16 24 C -0.14 -1.76 7.54 -39.18 -0.30 -2.06 16 25 C -0.06 -0.51 9.73 -39.64 -0.39 -0.89 16 26 H 0.11 0.48 8.14 -51.92 -0.42 0.06 16 27 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 29 H 0.13 1.83 7.44 -52.48 -0.39 1.44 16 30 H 0.14 2.30 7.82 -52.49 -0.41 1.89 16 31 H 0.04 1.08 6.51 -51.93 -0.34 0.74 16 32 H 0.03 0.68 7.50 -51.93 -0.39 0.29 16 33 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.08 1.35 7.87 -51.93 -0.41 0.94 16 35 H 0.10 1.32 4.26 -51.93 -0.22 1.10 16 36 H 0.11 1.36 8.13 -51.93 -0.42 0.94 16 37 H 0.10 1.16 8.03 -51.93 -0.42 0.74 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.17 1.89 2.33 -52.49 -0.12 1.77 16 42 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 359.72 15.07 5.42 5.42 Total: -1.00 -39.94 359.72 -9.25 -49.19 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.67 Total: 2.16 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -2.64 Total: -16.59 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.34 Total: -38.98 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.51 Total: -26.10 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 16 Polarization: 9.70 SS G_CDS: -1.52 Total: 8.17 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -39.94 -9.25 -49.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103438111.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.053 kcal (2) G-P(sol) polarization free energy of solvation -39.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds