Wall clock time and date at job start Sat Apr 11 2020 00:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 O 1.42103 * 109.46879 * 2 1 4 4 C 1.76195 * 103.00253 * 250.94318 * 2 1 3 5 5 C 1.38360 * 119.85529 * 89.99760 * 4 2 1 6 6 C 1.37959 * 120.14366 * 179.97438 * 5 4 2 7 7 C 1.39577 * 119.85677 * 0.02602 * 6 5 4 8 8 C 1.47845 * 120.14443 * 179.97438 * 7 6 5 9 9 O 1.21548 * 120.00188 * 22.60707 * 8 7 6 10 10 N 1.34780 * 119.99385 * 202.60678 * 8 7 6 11 11 C 1.46500 * 119.99609 * 182.02465 * 10 8 7 12 12 C 1.50696 * 109.47232 * 270.00143 * 11 10 8 13 13 H 1.08003 * 119.99999 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00281 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00191 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99813 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47426 * 90.00116 * 16 14 12 18 18 H 1.48502 * 109.47168 * 210.00057 * 16 14 12 19 19 H 1.48502 * 109.47208 * 329.99569 * 16 14 12 20 20 C 1.46494 * 120.00399 * 2.02166 * 10 8 7 21 21 C 1.52998 * 109.47363 * 259.87184 * 20 10 8 22 22 C 1.53004 * 117.49905 * 243.62121 * 21 20 10 23 23 C 1.52996 * 59.99997 * 252.51200 * 22 21 20 24 24 C 1.39581 * 119.70809 * 0.24946 * 7 6 5 25 25 C 1.37961 * 119.84968 * 359.47179 * 24 7 6 26 26 H 1.09002 * 109.47534 * 169.05468 * 1 2 3 27 27 H 1.09006 * 109.47525 * 289.05893 * 1 2 3 28 28 H 1.09000 * 109.47132 * 49.05793 * 1 2 3 29 29 H 1.08003 * 119.92806 * 359.97438 * 5 4 2 30 30 H 1.08002 * 120.07350 * 179.97438 * 6 5 4 31 31 H 1.09003 * 109.47327 * 29.99742 * 11 10 8 32 32 H 1.08999 * 109.47079 * 149.99730 * 11 10 8 33 33 H 0.96997 * 120.00282 * 180.02562 * 15 14 12 34 34 H 1.09000 * 109.47075 * 139.86831 * 20 10 8 35 35 H 1.08995 * 109.47204 * 19.87654 * 20 10 8 36 36 H 1.09000 * 115.55166 * 29.32752 * 21 20 10 37 37 H 1.08994 * 117.49671 * 0.02562 * 22 21 20 38 38 H 1.09000 * 117.49496 * 145.02228 * 22 21 20 39 39 H 1.08998 * 117.49882 * 252.51120 * 23 22 21 40 40 H 1.09000 * 117.50168 * 107.49436 * 23 22 21 41 41 H 1.08000 * 120.07241 * 179.72416 * 24 7 6 42 42 H 1.08001 * 119.92020 * 180.27563 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2875 1.3398 0.0000 4 6 2.2103 -0.5605 -1.6227 5 6 2.3653 0.3545 -2.6488 6 6 2.6762 -0.0777 -3.9215 7 6 2.8339 -1.4416 -4.1729 8 6 3.1666 -1.9119 -5.5345 9 8 3.6975 -1.1570 -6.3255 10 7 2.8810 -3.1778 -5.8987 11 6 3.2506 -3.6573 -7.2327 12 6 2.1193 -3.3933 -8.1927 13 1 1.2152 -2.9165 -7.8438 14 6 2.2380 -3.7615 -9.5161 15 7 1.2505 -3.5316 -10.3537 16 14 3.8014 -4.5869 -10.1193 17 1 3.6695 -6.0594 -9.9794 18 1 4.0235 -4.2432 -11.5468 19 1 4.9542 -4.1141 -9.3113 20 6 2.2011 -4.0742 -4.9605 21 6 3.2276 -4.9999 -4.3046 22 6 3.1003 -6.5004 -4.5752 23 6 2.7310 -5.9368 -3.2016 24 6 2.6706 -2.3599 -3.1345 25 6 2.3654 -1.9139 -1.8651 26 1 -0.3634 -1.0090 -0.1951 27 1 -0.3634 0.3356 0.9714 28 1 -0.3633 0.6734 -0.7763 29 1 2.2425 1.4096 -2.4531 30 1 2.7964 0.6375 -4.7217 31 1 4.1446 -3.1341 -7.5721 32 1 3.4499 -4.7281 -7.1916 33 1 1.3338 -3.7909 -11.2847 34 1 1.4643 -4.6714 -5.4977 35 1 1.7006 -3.4846 -4.1925 36 1 4.2325 -4.5901 -4.2023 37 1 2.2855 -6.8280 -5.2207 38 1 4.0216 -7.0780 -4.6510 39 1 3.4093 -6.1435 -2.3738 40 1 1.6730 -5.8936 -2.9431 41 1 2.7869 -3.4168 -3.3234 42 1 2.2431 -2.6231 -1.0599 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103438111.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:55 Heat of formation + Delta-G solvation = -10.781276 kcal Electronic energy + Delta-G solvation = -24772.226620 eV Core-core repulsion = 21231.303113 eV Total energy + Delta-G solvation = -3540.923506 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.73207 -39.30518 -38.67113 -36.88400 -36.23012 -34.76500 -32.78352 -32.13972 -30.19569 -29.55176 -28.13427 -25.62823 -24.01315 -23.50518 -23.03885 -21.94292 -20.53894 -19.16580 -19.09755 -18.47858 -17.77318 -17.24176 -16.62828 -16.42513 -16.01942 -15.87607 -15.72026 -15.44855 -15.16334 -14.88994 -14.63818 -14.46262 -14.41383 -13.88078 -13.79732 -13.69033 -13.30351 -13.20912 -13.04453 -12.74288 -12.68020 -12.46634 -12.20664 -12.09379 -11.84573 -11.81419 -11.43345 -11.24076 -10.92896 -10.87598 -10.83431 -10.27731 -9.94678 -9.57448 -9.36965 -8.39135 -6.45030 -0.51550 0.27301 0.91627 1.27404 1.32664 1.43360 1.59522 1.88942 2.08369 2.26941 2.63538 2.92025 2.95496 2.99829 3.42324 3.72163 3.86360 3.91821 4.01970 4.17251 4.33054 4.34761 4.39728 4.42110 4.49158 4.60388 4.63138 4.71276 4.77549 4.89133 4.93312 4.96826 5.09415 5.13854 5.16428 5.25215 5.27731 5.30473 5.40371 5.44273 5.53732 5.81177 6.16462 6.50706 6.55797 7.10526 7.23859 8.78038 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.017393 B = 0.003513 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.436243 B = 7969.504344 C = 8924.947981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.500 4.500 2 S 1.419 4.581 3 O -0.926 6.926 4 C -0.447 4.447 5 C -0.079 4.079 6 C -0.107 4.107 7 C -0.111 4.111 8 C 0.531 3.469 9 O -0.594 6.594 10 N -0.581 5.581 11 C 0.229 3.771 12 C -0.540 4.540 13 H 0.025 0.975 14 C 0.013 3.987 15 N -0.944 5.944 16 Si 0.948 3.052 17 H -0.245 1.245 18 H -0.281 1.281 19 H -0.258 1.258 20 C 0.105 3.895 21 C -0.203 4.203 22 C -0.187 4.187 23 C -0.133 4.133 24 C -0.135 4.135 25 C -0.028 4.028 26 H 0.147 0.853 27 H 0.125 0.875 28 H 0.056 0.944 29 H 0.117 0.883 30 H 0.103 0.897 31 H 0.016 0.984 32 H 0.055 0.945 33 H 0.270 0.730 34 H 0.069 0.931 35 H 0.125 0.875 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.127 0.873 40 H 0.118 0.882 41 H 0.193 0.807 42 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.313 -7.685 29.591 30.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 1.615 4.385 3 O -0.922 6.922 4 C -0.542 4.542 5 C -0.098 4.098 6 C -0.127 4.127 7 C -0.114 4.114 8 C 0.321 3.679 9 O -0.476 6.476 10 N -0.309 5.309 11 C 0.107 3.893 12 C -0.578 4.578 13 H 0.043 0.957 14 C -0.185 4.185 15 N -0.584 5.584 16 Si 0.770 3.230 17 H -0.169 1.169 18 H -0.207 1.207 19 H -0.182 1.182 20 C -0.017 4.017 21 C -0.222 4.222 22 C -0.224 4.224 23 C -0.170 4.170 24 C -0.153 4.153 25 C -0.046 4.046 26 H 0.165 0.835 27 H 0.143 0.857 28 H 0.076 0.924 29 H 0.135 0.865 30 H 0.121 0.879 31 H 0.034 0.966 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.143 0.857 36 H 0.121 0.879 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.145 0.855 40 H 0.137 0.863 41 H 0.209 0.791 42 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 1.139 -7.077 29.678 30.531 hybrid contribution -0.464 1.981 -3.755 4.270 sum 0.675 -5.097 25.923 26.428 Atomic orbital electron populations 1.27794 1.20532 1.09851 1.07612 1.68562 0.85715 0.96255 0.87935 1.92992 1.75943 1.41081 1.82217 1.28403 1.08923 1.00323 1.16530 1.21007 0.96858 0.99927 0.92047 1.21222 0.99007 0.94736 0.97737 1.20167 1.02850 0.95249 0.93151 1.19084 0.78933 0.81998 0.87927 1.90705 1.46277 1.55561 1.55063 1.47819 1.56661 1.11028 1.15395 1.19318 0.94708 0.95278 0.79952 1.21513 1.01628 1.39987 0.94693 0.95679 1.25852 1.00179 0.96065 0.96419 1.70049 1.34385 1.48924 1.05028 0.85712 0.79306 0.80138 0.77845 1.16858 1.20667 1.18241 1.22291 0.94322 0.92384 0.92668 1.22633 1.00303 0.92677 1.06558 1.23108 1.03765 0.94245 1.01246 1.23218 1.03874 0.98459 0.91410 1.23142 0.97262 1.02345 0.92538 1.21619 0.92285 0.93683 0.97011 0.83472 0.85689 0.92413 0.86524 0.87857 0.96578 0.92718 0.92150 0.91212 0.85740 0.87873 0.89420 0.88201 0.85501 0.86329 0.79051 0.76726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -4.09 10.70 113.37 1.21 -2.88 16 2 S 1.42 15.07 14.18 -56.49 -0.80 14.27 16 3 O -0.93 -24.76 16.88 -148.98 -2.52 -27.27 16 4 C -0.45 -8.11 5.62 22.33 0.13 -7.99 16 5 C -0.08 -2.27 9.43 22.23 0.21 -2.06 16 6 C -0.11 -3.77 9.59 22.53 0.22 -3.55 16 7 C -0.11 -3.84 5.62 -20.09 -0.11 -3.95 16 8 C 0.53 24.17 7.53 86.79 0.65 24.83 16 9 O -0.59 -33.37 16.16 -3.87 -0.06 -33.43 16 10 N -0.58 -24.71 2.47 -829.60 -2.05 -26.76 16 11 C 0.23 11.56 4.21 85.63 0.36 11.92 16 12 C -0.54 -32.75 9.94 25.60 0.25 -32.49 16 13 H 0.02 1.71 8.06 -2.91 -0.02 1.68 16 14 C 0.01 0.79 5.47 84.65 0.46 1.25 16 15 N -0.94 -60.65 13.96 21.45 0.30 -60.35 16 16 Si 0.95 45.10 27.47 68.60 1.88 46.98 16 17 H -0.24 -10.46 7.11 99.48 0.71 -9.75 16 18 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 19 H -0.26 -11.98 6.54 99.48 0.65 -11.33 16 20 C 0.10 3.07 5.12 86.38 0.44 3.52 16 21 C -0.20 -4.26 4.03 -10.79 -0.04 -4.31 16 22 C -0.19 -3.50 10.18 30.59 0.31 -3.19 16 23 C -0.13 -1.47 9.97 30.59 0.31 -1.17 16 24 C -0.13 -2.93 7.54 22.53 0.17 -2.76 16 25 C -0.03 -0.35 9.73 22.23 0.22 -0.14 16 26 H 0.15 0.27 8.14 -2.39 -0.02 0.25 16 27 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.12 3.55 7.44 -2.91 -0.02 3.53 16 30 H 0.10 4.13 7.82 -2.91 -0.02 4.10 16 31 H 0.02 0.89 6.51 -2.39 -0.02 0.88 16 32 H 0.05 2.48 7.50 -2.39 -0.02 2.46 16 33 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 34 H 0.07 2.23 7.87 -2.39 -0.02 2.22 16 35 H 0.13 2.99 4.26 -2.39 -0.01 2.98 16 36 H 0.10 2.34 8.13 -2.39 -0.02 2.32 16 37 H 0.09 1.86 8.03 -2.39 -0.02 1.84 16 38 H 0.10 1.72 8.14 -2.39 -0.02 1.71 16 39 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.19 3.43 2.33 -2.91 -0.01 3.43 16 42 H 0.22 -0.44 8.06 -2.91 -0.02 -0.47 16 Total: -1.00 -100.38 359.72 2.52 -97.87 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.98 Total: 11.66 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: 4.78 Total: -22.97 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -1.75 Total: -87.11 kcal Atomic # 8 Polarization: -58.12 SS G_CDS: -2.58 Total: -60.70 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.98 kcal Atomic # 16 Polarization: 15.07 SS G_CDS: -0.80 Total: 14.27 kcal Total: -100.38 2.52 -97.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103438111.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.084 kcal (2) G-P(sol) polarization free energy of solvation -100.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds