Wall clock time and date at job start Sat Apr 11 2020 00:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 114.00253 * 2 1 4 4 C 1.53004 * 109.47233 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47173 * 64.99921 * 4 3 2 6 6 C 1.46507 * 120.00005 * 93.39676 * 5 4 3 7 7 C 1.50697 * 109.46948 * 95.85416 * 6 5 4 8 8 H 1.08000 * 119.99582 * 114.22514 * 7 6 5 9 9 C 1.37869 * 120.00560 * 293.95327 * 7 6 5 10 10 N 1.31518 * 119.99840 * 349.29806 * 9 7 6 11 11 Si 1.86794 * 120.00300 * 169.30220 * 9 7 6 12 12 H 1.48499 * 109.47171 * 90.00207 * 11 9 7 13 13 H 1.48507 * 109.46974 * 209.99907 * 11 9 7 14 14 H 1.48501 * 109.47307 * 329.99733 * 11 9 7 15 15 C 1.34777 * 120.00126 * 273.39880 * 5 4 3 16 16 O 1.21276 * 119.99877 * 355.14092 * 15 5 4 17 17 C 1.50703 * 119.99847 * 175.13722 * 15 5 4 18 18 H 1.08997 * 110.97052 * 335.59152 * 17 15 5 19 19 C 1.54146 * 111.09827 * 211.46025 * 17 15 5 20 20 C 1.50873 * 110.49682 * 270.37457 * 19 17 15 21 21 C 1.39600 * 126.83211 * 159.36445 * 20 19 17 22 22 C 1.37696 * 121.05747 * 179.66803 * 21 20 19 23 23 C 1.38323 * 120.54421 * 359.97438 * 22 21 20 24 24 C 1.38028 * 119.29080 * 0.18195 * 23 22 21 25 25 C 1.38822 * 120.16330 * 0.02562 * 24 23 22 26 26 S 1.77428 * 130.57493 * 179.32636 * 25 24 23 27 27 H 1.08995 * 109.47257 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46436 * 300.00019 * 1 2 3 29 29 H 1.08996 * 109.47216 * 59.99123 * 1 2 3 30 30 H 1.08997 * 109.46774 * 60.00473 * 3 2 1 31 31 H 1.08996 * 109.46826 * 300.00277 * 3 2 1 32 32 H 1.08999 * 109.46787 * 304.99976 * 4 3 2 33 33 H 1.08994 * 109.47200 * 184.99781 * 4 3 2 34 34 H 1.08997 * 109.46781 * 335.85730 * 6 5 4 35 35 H 1.08997 * 109.47396 * 215.85987 * 6 5 4 36 36 H 0.97002 * 120.00225 * 179.97438 * 10 9 7 37 37 H 1.08991 * 109.28105 * 30.65262 * 19 17 15 38 38 H 1.08994 * 109.27961 * 150.17874 * 19 17 15 39 39 H 1.08003 * 119.46909 * 359.64349 * 21 20 19 40 40 H 1.08002 * 119.72907 * 179.97438 * 22 21 20 41 41 H 1.08001 * 120.35574 * 180.16765 * 23 22 21 42 42 H 1.08003 * 119.91832 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.3578 1.4036 -2.3912 7 6 5.8532 1.5899 -2.3985 8 1 6.4449 1.1765 -3.2018 9 6 6.4653 2.2927 -1.3826 10 7 5.7389 2.9768 -0.5258 11 14 8.3263 2.2736 -1.2231 12 1 8.9021 3.3941 -2.0093 13 1 8.7023 2.4267 0.2054 14 1 8.8541 0.9847 -1.7384 15 6 4.0292 -0.7783 -1.3573 16 8 3.7982 -1.4715 -0.3894 17 6 4.3759 -1.4180 -2.6770 18 1 4.1387 -0.7529 -3.5073 19 6 3.6693 -2.7787 -2.8367 20 6 4.5275 -3.8881 -2.2808 21 6 4.1007 -5.1551 -1.8793 22 6 4.9929 -6.0840 -1.3924 23 6 6.3385 -5.7802 -1.2905 24 6 6.7802 -4.5316 -1.6791 25 6 5.8800 -3.5936 -2.1660 26 16 6.1359 -1.9277 -2.7203 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8514 0.5682 0.8409 33 1 3.9786 2.1764 0.0889 34 1 3.8710 2.3751 -2.3059 35 1 4.0471 0.9217 -3.3182 36 1 6.1696 3.4711 0.1892 37 1 2.7198 -2.7560 -2.3022 38 1 3.4826 -2.9653 -3.8942 39 1 3.0538 -5.4108 -1.9515 40 1 4.6392 -7.0579 -1.0875 41 1 7.0361 -6.5120 -0.9106 42 1 7.8287 -4.2837 -1.6043 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112677034.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:30:59 Heat of formation + Delta-G solvation = -43.082635 kcal Electronic energy + Delta-G solvation = -25688.674252 eV Core-core repulsion = 22146.350054 eV Total energy + Delta-G solvation = -3542.324198 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.34680 -38.55909 -37.12688 -34.91938 -33.93523 -32.27816 -30.60077 -30.25994 -28.80325 -27.01965 -25.87806 -24.47857 -22.96169 -22.74649 -21.78270 -20.79040 -18.39141 -17.44663 -16.99505 -15.94201 -15.93555 -15.48156 -15.31055 -15.19362 -14.76462 -14.57955 -14.49689 -14.15842 -13.70758 -13.43067 -13.06376 -12.61262 -12.52879 -12.34229 -12.10937 -11.88562 -11.69644 -11.69273 -11.29260 -11.16789 -10.98196 -10.88283 -10.76991 -10.75816 -10.38386 -9.86903 -9.82918 -9.62562 -9.28850 -9.18915 -8.83739 -8.57255 -8.50895 -7.27701 -6.88955 -6.27431 -4.31952 1.42172 1.56210 1.94179 2.64418 3.22782 3.32373 3.40614 3.89218 3.99186 4.09867 4.31968 4.43385 4.74333 4.97376 5.05036 5.14785 5.19265 5.43196 5.51420 5.53028 5.57871 5.62559 5.73796 5.82939 5.83704 5.89527 5.91085 5.95300 6.07682 6.17567 6.23290 6.53721 6.54837 6.57610 6.67815 6.75197 7.06143 7.11660 7.18491 7.67743 7.75270 7.90350 8.02780 8.55741 8.89460 9.36119 9.39541 10.78445 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.010271 B = 0.006384 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.513850 B = 4384.605173 C = 6421.395065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.371 6.371 3 C 0.045 3.955 4 C 0.109 3.891 5 N -0.568 5.568 6 C 0.222 3.778 7 C -0.530 4.530 8 H 0.062 0.938 9 C 0.084 3.916 10 N -0.881 5.881 11 Si 0.889 3.111 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.266 1.266 15 C 0.527 3.473 16 O -0.549 6.549 17 C -0.078 4.078 18 H 0.135 0.865 19 C -0.070 4.070 20 C -0.083 4.083 21 C -0.095 4.095 22 C -0.128 4.128 23 C -0.111 4.111 24 C -0.091 4.091 25 C -0.087 4.087 26 S -0.076 6.076 27 H 0.076 0.924 28 H 0.032 0.968 29 H 0.032 0.968 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.145 0.855 34 H 0.048 0.952 35 H 0.025 0.975 36 H 0.266 0.734 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.816 -9.354 -2.968 11.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.290 6.290 3 C -0.033 4.033 4 C -0.014 4.014 5 N -0.298 5.298 6 C 0.103 3.897 7 C -0.569 4.569 8 H 0.080 0.920 9 C -0.120 4.120 10 N -0.519 5.519 11 Si 0.716 3.284 12 H -0.206 1.206 13 H -0.210 1.210 14 H -0.191 1.191 15 C 0.311 3.689 16 O -0.429 6.429 17 C -0.209 4.209 18 H 0.153 0.847 19 C -0.108 4.108 20 C -0.089 4.089 21 C -0.115 4.115 22 C -0.148 4.148 23 C -0.131 4.131 24 C -0.115 4.115 25 C -0.199 4.199 26 S 0.169 5.831 27 H 0.094 0.906 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.162 0.838 34 H 0.066 0.934 35 H 0.043 0.957 36 H 0.076 0.924 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.143 0.857 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.753 -8.925 -2.718 10.471 hybrid contribution -0.281 -0.278 0.593 0.713 sum -5.035 -9.204 -2.125 10.704 Atomic orbital electron populations 1.22636 0.83269 1.01706 0.98969 1.88160 1.17621 1.28086 1.95102 1.23245 0.96687 0.84344 0.99009 1.22100 0.89129 1.02994 0.87182 1.48577 1.62072 1.04336 1.14805 1.19419 0.95762 0.91113 0.83369 1.21420 0.92309 1.34257 1.08920 0.91971 1.24881 0.98624 0.93273 0.95269 1.69529 1.35656 1.29713 1.16962 0.86612 0.85305 0.78884 0.77550 1.20602 1.21019 1.19084 1.19548 0.77678 0.83394 0.88265 1.90616 1.51259 1.62637 1.38383 1.24240 0.94781 0.99276 1.02594 0.84731 1.20758 0.99538 0.88890 1.01612 1.20781 0.93060 0.95356 0.99712 1.20721 0.99460 0.92321 0.98952 1.20830 0.93471 0.99265 1.01261 1.20981 0.95829 0.96046 1.00263 1.20361 0.98839 0.92889 0.99411 1.22447 0.96251 0.98661 1.02580 1.86543 1.10377 1.04670 1.81520 0.90555 0.94972 0.94951 0.93802 0.93879 0.91952 0.83787 0.93424 0.95652 0.92390 0.88732 0.89061 0.86426 0.86153 0.85715 0.85965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.57 16 2 O -0.37 -7.24 9.30 -45.57 -0.42 -7.66 16 3 C 0.04 0.84 6.28 37.16 0.23 1.07 16 4 C 0.11 2.42 5.54 -4.04 -0.02 2.40 16 5 N -0.57 -12.87 2.42 -175.06 -0.42 -13.29 16 6 C 0.22 5.01 5.14 -5.19 -0.03 4.98 16 7 C -0.53 -13.16 9.33 -34.44 -0.32 -13.48 16 8 H 0.06 1.55 7.84 -52.49 -0.41 1.14 16 9 C 0.08 2.13 5.38 -17.82 -0.10 2.04 16 10 N -0.88 -22.46 10.22 55.43 0.57 -21.90 16 11 Si 0.89 20.64 29.55 -169.99 -5.02 15.61 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 15 C 0.53 11.94 6.24 -10.98 -0.07 11.87 16 16 O -0.55 -13.91 14.98 -4.78 -0.07 -13.98 16 17 C -0.08 -1.49 3.26 -27.28 -0.09 -1.58 16 18 H 0.14 2.39 5.90 -51.93 -0.31 2.09 16 19 C -0.07 -1.16 5.47 -27.20 -0.15 -1.30 16 20 C -0.08 -1.44 5.85 -103.79 -0.61 -2.05 16 21 C -0.09 -1.41 9.97 -39.27 -0.39 -1.80 16 22 C -0.13 -1.70 10.00 -39.75 -0.40 -2.10 16 23 C -0.11 -1.52 10.08 -39.63 -0.40 -1.92 16 24 C -0.09 -1.47 10.05 -39.44 -0.40 -1.86 16 25 C -0.09 -1.60 6.48 -39.12 -0.25 -1.85 16 26 S -0.08 -1.52 22.54 -107.50 -2.42 -3.94 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.03 0.41 8.14 -51.92 -0.42 -0.01 16 29 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.51 7.46 -51.93 -0.39 1.12 16 33 H 0.15 3.35 5.16 -51.93 -0.27 3.08 16 34 H 0.05 1.11 7.95 -51.93 -0.41 0.70 16 35 H 0.03 0.51 5.93 -51.93 -0.31 0.21 16 36 H 0.27 6.57 8.31 -40.82 -0.34 6.24 16 37 H 0.09 1.60 7.74 -51.93 -0.40 1.20 16 38 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 40 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.12 1.80 8.06 -52.48 -0.42 1.37 16 LS Contribution 357.79 15.07 5.39 5.39 Total: -1.00 -29.89 357.79 -10.14 -40.03 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.86 Total: 3.76 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -1.87 Total: -4.02 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.14 Total: -35.19 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.50 Total: -21.64 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.42 Total: -3.94 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.89 -10.14 -40.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112677034.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.055 kcal (2) G-P(sol) polarization free energy of solvation -29.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds