Wall clock time and date at job start Sat Apr 11 2020 00:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00306 * 2 1 4 4 C 1.53001 * 109.47131 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47307 * 65.00254 * 4 3 2 6 6 C 1.46505 * 119.99949 * 264.84408 * 5 4 3 7 7 C 1.50705 * 109.46725 * 273.61448 * 6 5 4 8 8 H 1.07998 * 119.99764 * 359.97438 * 7 6 5 9 9 C 1.37871 * 119.99798 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00229 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00131 * 359.97438 * 9 7 6 12 12 H 1.48511 * 109.46945 * 89.99976 * 11 9 7 13 13 H 1.48500 * 109.47424 * 209.99778 * 11 9 7 14 14 H 1.48500 * 109.47206 * 330.00274 * 11 9 7 15 15 C 1.34779 * 120.00390 * 84.83723 * 5 4 3 16 16 O 1.21286 * 119.99776 * 5.72553 * 15 5 4 17 17 C 1.50693 * 120.00256 * 185.72221 * 15 5 4 18 18 H 1.08997 * 110.99784 * 22.01307 * 17 15 5 19 19 C 1.54140 * 111.09624 * 146.15670 * 17 15 5 20 20 C 1.50872 * 110.47279 * 146.08374 * 19 17 15 21 21 C 1.39605 * 126.82173 * 159.78309 * 20 19 17 22 22 C 1.37694 * 121.05760 * 179.76816 * 21 20 19 23 23 C 1.38329 * 120.54558 * 0.02562 * 22 21 20 24 24 C 1.38024 * 119.28867 * 0.08857 * 23 22 21 25 25 C 1.38818 * 120.16107 * 0.02562 * 24 23 22 26 26 S 1.77434 * 130.57171 * 179.72624 * 25 24 23 27 27 H 1.08997 * 109.47255 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46941 * 299.99840 * 1 2 3 29 29 H 1.09000 * 109.47076 * 59.99799 * 1 2 3 30 30 H 1.09002 * 109.47196 * 60.00513 * 3 2 1 31 31 H 1.09000 * 109.47134 * 300.00301 * 3 2 1 32 32 H 1.08999 * 109.47338 * 304.99680 * 4 3 2 33 33 H 1.09003 * 109.46861 * 185.00044 * 4 3 2 34 34 H 1.09002 * 109.46769 * 33.60896 * 6 5 4 35 35 H 1.08992 * 109.46906 * 153.61783 * 6 5 4 36 36 H 0.96997 * 120.00532 * 180.02562 * 10 9 7 37 37 H 1.09000 * 109.27173 * 25.83608 * 19 17 15 38 38 H 1.09002 * 109.26948 * 266.33492 * 19 17 15 39 39 H 1.07996 * 119.47301 * 359.78485 * 21 20 19 40 40 H 1.08006 * 119.72797 * 180.02562 * 22 21 20 41 41 H 1.07997 * 120.35343 * 180.11331 * 23 22 21 42 42 H 1.07994 * 119.91909 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.2140 -0.8801 -1.3106 7 6 5.6254 -1.1742 -0.8717 8 1 6.2795 -0.3661 -0.5794 9 6 6.0815 -2.4750 -0.8434 10 7 7.3133 -2.7318 -0.4609 11 14 4.9498 -3.8728 -1.3483 12 1 5.0871 -4.1188 -2.8064 13 1 5.3187 -5.1026 -0.6020 14 1 3.5441 -3.5083 -1.0380 15 6 4.1614 1.3224 -2.3515 16 8 4.0653 2.5293 -2.2789 17 6 4.4884 0.6706 -3.6703 18 1 4.1691 -0.3715 -3.6806 19 6 3.8678 1.4526 -4.8447 20 6 4.7642 1.3846 -6.0563 21 6 4.3958 1.6125 -7.3834 22 6 5.3179 1.5225 -8.4021 23 6 6.6360 1.2020 -8.1309 24 6 7.0198 0.9706 -6.8254 25 6 6.0896 1.0591 -5.7988 26 16 6.2732 0.8152 -4.0510 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8515 0.5681 0.8409 33 1 3.9786 2.1764 0.0889 34 1 3.5140 -1.3905 -0.6491 35 1 4.0706 -1.2313 -2.3324 36 1 7.6344 -3.6468 -0.4413 37 1 3.7354 2.4945 -4.5531 38 1 2.8971 1.0220 -5.0906 39 1 3.3713 1.8637 -7.6149 40 1 5.0096 1.7036 -9.4212 41 1 7.3570 1.1340 -8.9320 42 1 8.0463 0.7201 -6.6021 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112677036.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:31:02 Heat of formation + Delta-G solvation = -60.428411 kcal Electronic energy + Delta-G solvation = -24996.319295 eV Core-core repulsion = 21453.242927 eV Total energy + Delta-G solvation = -3543.076368 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.19915 -40.15455 -38.76732 -36.84879 -35.50833 -34.57313 -32.04458 -31.80055 -30.51578 -29.34557 -27.23338 -26.01535 -24.47814 -24.17118 -23.44283 -22.12748 -20.13627 -19.14222 -18.78636 -18.46204 -17.57779 -17.20712 -16.95315 -16.44169 -16.31123 -16.28890 -16.04663 -15.69209 -15.33164 -14.99651 -14.56732 -14.27901 -14.15684 -14.11010 -13.76271 -13.64151 -13.49547 -13.21864 -13.01138 -12.79428 -12.75194 -12.47079 -12.31702 -12.09071 -12.02174 -11.94083 -11.69158 -11.27787 -11.02084 -10.77172 -10.62567 -10.53608 -9.75068 -9.54662 -8.49199 -8.27704 -6.33491 0.06556 0.27945 0.37152 1.18972 1.37848 1.38927 1.49174 1.84761 2.01072 2.34686 2.70381 2.88867 3.06435 3.30298 3.33971 3.71747 3.84051 3.95791 4.09652 4.16952 4.20649 4.36720 4.42102 4.48062 4.53468 4.54689 4.58176 4.60310 4.60809 4.75065 4.84101 4.85770 4.87436 4.94895 5.04820 5.33197 5.41171 5.43958 5.52493 5.56577 5.97712 6.12895 6.26056 6.48961 6.69454 7.04667 7.30804 8.88927 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.010698 B = 0.005139 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.648800 B = 5447.551323 C = 6978.616653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.059 3.941 4 C 0.115 3.885 5 N -0.578 5.578 6 C 0.221 3.779 7 C -0.531 4.531 8 H 0.028 0.972 9 C 0.024 3.976 10 N -0.940 5.940 11 Si 0.931 3.069 12 H -0.265 1.265 13 H -0.282 1.282 14 H -0.238 1.238 15 C 0.538 3.462 16 O -0.569 6.569 17 C -0.078 4.078 18 H 0.124 0.876 19 C -0.069 4.069 20 C -0.117 4.117 21 C -0.094 4.094 22 C -0.116 4.116 23 C -0.098 4.098 24 C -0.106 4.106 25 C -0.107 4.107 26 S -0.146 6.146 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.038 0.962 36 H 0.267 0.733 37 H 0.098 0.902 38 H 0.118 0.882 39 H 0.151 0.849 40 H 0.165 0.835 41 H 0.163 0.837 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.853 6.531 -12.705 19.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C -0.018 4.018 4 C -0.008 4.008 5 N -0.306 5.306 6 C 0.099 3.901 7 C -0.570 4.570 8 H 0.047 0.953 9 C -0.175 4.175 10 N -0.579 5.579 11 Si 0.753 3.247 12 H -0.190 1.190 13 H -0.208 1.208 14 H -0.161 1.161 15 C 0.323 3.677 16 O -0.450 6.450 17 C -0.209 4.209 18 H 0.142 0.858 19 C -0.107 4.107 20 C -0.123 4.123 21 C -0.113 4.113 22 C -0.136 4.136 23 C -0.118 4.118 24 C -0.129 4.129 25 C -0.219 4.219 26 S 0.097 5.903 27 H 0.111 0.889 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.116 0.884 38 H 0.136 0.864 39 H 0.169 0.831 40 H 0.182 0.818 41 H 0.181 0.819 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.670 6.744 -11.683 17.837 hybrid contribution -0.652 -0.630 -0.197 0.928 sum -12.322 6.114 -11.880 18.175 Atomic orbital electron populations 1.22902 0.79696 1.03565 1.00778 1.87948 1.21369 1.28132 1.95545 1.22888 0.92594 0.84935 1.01423 1.21579 0.93458 0.99486 0.86278 1.47805 1.63660 1.09580 1.09601 1.19698 0.95471 0.77049 0.97871 1.21375 0.97059 0.93089 1.45453 0.95339 1.25670 0.96259 1.01247 0.94312 1.70044 1.18037 1.21011 1.48837 0.85960 0.80866 0.78644 0.79182 1.18966 1.20789 1.16066 1.19575 0.76443 0.86434 0.85200 1.90587 1.54302 1.14303 1.85855 1.24026 0.95076 1.04983 0.96782 0.85775 1.20821 0.99544 1.01992 0.88304 1.20963 0.92799 1.02440 0.96113 1.21145 1.01624 0.99032 0.89528 1.21415 0.92711 0.99033 1.00406 1.21490 0.97536 0.97662 0.95110 1.20689 0.98749 1.01522 0.91986 1.22454 0.97941 1.05946 0.95578 1.87107 1.09287 1.90683 1.03192 0.88924 0.92607 0.93642 0.89743 0.93436 0.89700 0.89230 0.93008 0.94415 0.92399 0.88406 0.86416 0.83143 0.81791 0.81927 0.85553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 113.37 1.25 1.81 16 2 O -0.41 -12.55 10.03 -148.98 -1.49 -14.04 16 3 C 0.06 1.70 6.25 71.98 0.45 2.15 16 4 C 0.11 4.13 5.81 86.38 0.50 4.63 16 5 N -0.58 -24.12 2.41 -826.14 -1.99 -26.12 16 6 C 0.22 10.05 4.08 85.63 0.35 10.40 16 7 C -0.53 -29.55 9.94 25.60 0.25 -29.29 16 8 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 9 C 0.02 1.36 5.47 84.65 0.46 1.82 16 10 N -0.94 -57.82 13.96 21.45 0.30 -57.52 16 11 Si 0.93 41.91 27.47 68.60 1.88 43.80 16 12 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 14 H -0.24 -9.74 6.54 99.48 0.65 -9.09 16 15 C 0.54 22.30 6.81 87.65 0.60 22.90 16 16 O -0.57 -24.88 15.50 -3.05 -0.05 -24.92 16 17 C -0.08 -2.95 3.28 30.23 0.10 -2.85 16 18 H 0.12 4.67 5.72 -2.39 -0.01 4.65 16 19 C -0.07 -2.08 5.84 30.29 0.18 -1.90 16 20 C -0.12 -3.42 5.98 -19.32 -0.12 -3.54 16 21 C -0.09 -1.98 9.97 22.47 0.22 -1.76 16 22 C -0.12 -2.02 10.00 22.16 0.22 -1.80 16 23 C -0.10 -1.94 10.08 22.24 0.22 -1.71 16 24 C -0.11 -2.93 10.05 22.36 0.22 -2.70 16 25 C -0.11 -3.59 6.48 22.56 0.15 -3.44 16 26 S -0.15 -6.17 22.53 -56.49 -1.27 -7.45 16 27 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 3.18 8.03 -2.39 -0.02 3.16 16 33 H 0.09 3.20 7.51 -2.39 -0.02 3.18 16 34 H 0.05 2.34 6.60 -2.39 -0.02 2.32 16 35 H 0.04 1.66 4.95 -2.39 -0.01 1.65 16 36 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 37 H 0.10 3.16 6.97 -2.39 -0.02 3.14 16 38 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 39 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 40 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 41 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 42 H 0.13 3.36 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -73.57 360.94 3.41 -70.17 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.97 Total: 21.36 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 5.07 Total: -5.28 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -1.69 Total: -83.63 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -1.54 Total: -38.97 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 1.88 Total: 43.80 kcal Atomic # 16 Polarization: -6.17 SS G_CDS: -1.27 Total: -7.45 kcal Total: -73.57 3.41 -70.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112677036.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.738 kcal (2) G-P(sol) polarization free energy of solvation -73.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds