Wall clock time and date at job start Sat Apr 11 2020 00:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81391 * 103.00113 * 2 1 4 4 H 1.09004 * 109.47502 * 55.00038 * 3 2 1 5 5 C 1.53000 * 109.47386 * 295.00023 * 3 2 1 6 6 C 1.53001 * 109.47401 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46970 * 60.00069 * 6 5 3 8 8 C 1.53003 * 109.47150 * 299.99828 * 7 6 5 9 9 H 1.08993 * 109.47415 * 300.00053 * 8 7 6 10 10 N 1.46500 * 109.47124 * 179.97438 * 8 7 6 11 11 S 1.65606 * 119.99825 * 95.00113 * 10 8 7 12 12 O 1.42097 * 104.27560 * 308.93171 * 11 10 8 13 13 O 1.42091 * 104.27561 * 181.06907 * 11 10 8 14 14 C 1.81407 * 104.44700 * 64.99932 * 11 10 8 15 15 C 1.52996 * 109.46799 * 180.02562 * 14 11 10 16 16 C 1.52998 * 109.46929 * 180.02562 * 15 14 11 17 17 C 1.50706 * 109.47348 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99302 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00436 * 179.72505 * 17 16 15 20 20 N 1.31515 * 119.99684 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00405 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47154 * 89.99418 * 21 19 17 23 23 H 1.48493 * 109.47010 * 209.99942 * 21 19 17 24 24 H 1.48502 * 109.46736 * 329.99638 * 21 19 17 25 25 C 1.53001 * 109.47044 * 60.00217 * 8 7 6 26 26 H 1.09002 * 109.47256 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47115 * 299.99781 * 1 2 3 28 28 H 1.08998 * 109.47416 * 60.00222 * 1 2 3 29 29 H 1.08995 * 109.47065 * 59.99757 * 5 3 2 30 30 H 1.08997 * 109.46767 * 300.00004 * 5 3 2 31 31 H 1.08993 * 109.47149 * 300.00289 * 6 5 3 32 32 H 1.08991 * 109.46903 * 179.97438 * 6 5 3 33 33 H 1.09001 * 109.47059 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.47354 * 59.99809 * 7 6 5 35 35 H 0.96998 * 120.00233 * 275.00232 * 10 8 7 36 36 H 1.09000 * 109.46876 * 60.00006 * 14 11 10 37 37 H 1.08994 * 109.47253 * 300.00070 * 14 11 10 38 38 H 1.09000 * 109.47441 * 60.00303 * 15 14 11 39 39 H 1.09002 * 109.47087 * 299.99749 * 15 14 11 40 40 H 1.09001 * 109.47671 * 60.00109 * 16 15 14 41 41 H 1.08998 * 109.47454 * 300.00107 * 16 15 14 42 42 H 0.97004 * 120.00247 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.47569 * 59.99897 * 25 8 7 44 44 H 1.09005 * 109.47112 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7428 2.4015 -1.3073 6 6 2.0865 3.8925 -1.3071 7 6 3.6013 4.0666 -1.1810 8 6 4.0805 3.4326 0.1263 9 1 3.5877 3.9188 0.9681 10 7 5.5311 3.5988 0.2467 11 16 6.1502 4.8759 1.1001 12 8 5.4846 6.0111 0.5640 13 8 7.5582 4.7278 0.9802 14 6 5.6218 4.5767 2.8095 15 6 6.1378 5.7029 3.7073 16 6 5.6927 5.4502 5.1491 17 6 6.2015 6.5592 6.0337 18 1 6.7844 7.3636 5.6098 19 6 5.9185 6.5497 7.3830 20 7 5.2041 5.5731 7.8981 21 14 6.5486 7.9248 8.4793 22 1 5.5444 9.0176 8.5292 23 1 6.7776 7.3999 9.8493 24 1 7.8247 8.4498 7.9306 25 6 3.7369 1.9416 0.1261 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.6636 2.2778 -1.3969 30 1 2.2354 1.9149 -2.1491 31 1 1.5936 4.3787 -0.4653 32 1 1.7454 4.3440 -2.2386 33 1 3.8460 5.1288 -1.1804 34 1 4.0942 3.5803 -2.0228 35 1 6.1289 2.9609 -0.1735 36 1 6.0250 3.6240 3.1529 37 1 4.5331 4.5474 2.8534 38 1 5.7342 6.6554 3.3637 39 1 7.2265 5.7326 3.6634 40 1 6.0967 4.4979 5.4926 41 1 4.6040 5.4202 5.1934 42 1 5.0047 5.5665 8.8474 43 1 4.2298 1.4552 -0.7157 44 1 4.0779 1.4900 1.0577 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117374518.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:31:06 Heat of formation + Delta-G solvation = -111.376184 kcal Electronic energy + Delta-G solvation = -23220.259213 eV Core-core repulsion = 19810.417536 eV Total energy + Delta-G solvation = -3409.841678 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.122 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.17365 -36.87568 -35.76537 -34.68811 -34.50566 -32.20160 -31.20424 -29.68756 -28.63293 -27.82981 -23.75153 -23.12142 -22.72397 -20.81616 -20.35216 -19.17426 -17.48619 -17.25768 -16.58238 -16.03746 -15.72172 -15.50284 -15.04218 -14.80196 -14.58096 -14.49286 -14.13773 -13.98063 -13.86693 -13.44971 -13.01404 -12.62536 -12.41918 -12.29367 -12.05619 -11.94944 -11.93395 -11.85852 -11.79174 -11.60087 -11.28306 -11.17805 -11.00754 -10.92788 -10.85926 -10.66676 -10.44231 -10.12300 -9.96392 -9.66206 -9.33330 -9.09516 -8.41747 -8.01226 -6.06654 -4.09781 0.44026 1.32620 2.22986 2.80021 3.29754 3.35957 3.40067 3.91544 4.21940 4.28243 4.41211 4.42085 4.45078 4.72918 4.75583 4.77956 4.82304 4.92960 5.00038 5.02752 5.09566 5.17447 5.23288 5.29675 5.33025 5.37377 5.55992 5.65741 5.67222 5.80269 5.86016 5.88356 6.05616 6.12041 6.24993 6.43125 6.84855 6.88513 7.55677 7.65472 7.91269 8.31684 8.96443 9.55035 11.04533 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.014040 B = 0.002965 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.866180 B = 9440.520183 C =10706.220029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.263 6.263 3 C -0.051 4.051 4 H 0.092 0.908 5 C -0.115 4.115 6 C -0.116 4.116 7 C -0.140 4.140 8 C 0.160 3.840 9 H 0.087 0.913 10 N -1.120 6.120 11 S 2.599 3.401 12 O -0.960 6.960 13 O -0.963 6.963 14 C -0.610 4.610 15 C -0.106 4.106 16 C 0.031 3.969 17 C -0.526 4.526 18 H 0.058 0.942 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.894 3.106 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C -0.107 4.107 26 H 0.099 0.901 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.415 0.585 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.021 0.979 41 H 0.020 0.980 42 H 0.261 0.739 43 H 0.080 0.920 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.405 -10.540 -20.117 24.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.034 6.034 3 C -0.180 4.180 4 H 0.111 0.889 5 C -0.154 4.154 6 C -0.156 4.156 7 C -0.179 4.179 8 C 0.051 3.949 9 H 0.105 0.895 10 N -0.876 5.876 11 S 2.695 3.305 12 O -0.949 6.949 13 O -0.954 6.954 14 C -0.742 4.742 15 C -0.145 4.145 16 C -0.008 4.008 17 C -0.565 4.565 18 H 0.076 0.924 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.147 4.147 26 H 0.118 0.882 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.249 0.751 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.416 -10.698 -20.243 24.393 hybrid contribution -0.768 0.880 1.066 1.581 sum -9.183 -9.817 -19.177 23.419 Atomic orbital electron populations 1.23397 0.94183 1.06424 1.05026 1.86912 1.07417 1.11157 1.97935 1.23174 0.99724 0.93503 1.01625 0.88919 1.21911 1.00971 0.96144 0.96412 1.21543 0.96014 0.95320 1.02756 1.22123 0.95509 1.02820 0.97451 1.20699 0.79721 0.95572 0.98900 0.89535 1.55820 1.13558 1.48183 1.70018 1.05364 0.74089 0.73617 0.77417 1.93568 1.76151 1.48719 1.76508 1.93579 1.29714 1.85637 1.86429 1.30561 1.11961 1.10392 1.21257 1.21498 1.00528 0.93738 0.98743 1.19061 0.96874 0.97459 0.87361 1.21254 1.33824 1.08456 0.92944 0.92371 1.25017 0.95101 0.96043 0.98204 1.69957 1.38662 1.31879 1.12913 0.86555 0.79371 0.82089 0.79807 1.20571 1.21161 1.19733 1.21670 0.92737 0.95943 1.04338 0.88192 0.90368 0.90440 0.91777 0.90536 0.91372 0.91018 0.89649 0.91198 0.75129 0.85214 0.85656 0.91560 0.91561 0.96111 0.96150 0.92894 0.90133 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.45 101.05 1.06 0.32 16 2 S -0.26 -2.27 21.79 -107.50 -2.34 -4.61 16 3 C -0.05 -0.39 2.65 -26.73 -0.07 -0.46 16 4 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 5 C -0.12 -0.76 5.11 -26.73 -0.14 -0.90 16 6 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 7 C -0.14 -1.22 5.53 -26.73 -0.15 -1.37 16 8 C 0.16 1.45 2.56 -67.93 -0.17 1.28 16 9 H 0.09 0.77 7.15 -51.93 -0.37 0.40 16 10 N -1.12 -11.29 5.36 -4.89 -0.03 -11.32 16 11 S 2.60 36.77 5.38 -107.50 -0.58 36.19 16 12 O -0.96 -16.03 17.11 -57.54 -0.98 -17.01 16 13 O -0.96 -16.66 18.08 -57.54 -1.04 -17.70 16 14 C -0.61 -9.14 5.96 37.16 0.22 -8.92 16 15 C -0.11 -2.12 5.16 -26.73 -0.14 -2.26 16 16 C 0.03 0.77 4.97 -27.88 -0.14 0.64 16 17 C -0.53 -14.79 9.11 -34.44 -0.31 -15.10 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 20 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 21 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 C -0.11 -0.85 4.74 -26.73 -0.13 -0.98 16 26 H 0.10 0.53 8.14 -51.92 -0.42 0.10 16 27 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 28 H 0.08 0.39 7.14 -51.93 -0.37 0.02 16 29 H 0.06 0.38 6.92 -51.93 -0.36 0.02 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.91 7.42 -51.93 -0.39 0.52 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.41 3.43 8.80 -34.47 -0.30 3.12 16 36 H 0.13 1.75 8.14 -51.92 -0.42 1.33 16 37 H 0.13 1.64 7.44 -51.93 -0.39 1.26 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 374.40 15.07 5.64 5.64 Total: -1.00 -34.45 374.40 -11.48 -45.93 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -7.64 Total: -0.70 kcal Atomic # 6 Polarization: -26.97 SS G_CDS: -0.22 Total: -27.19 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.71 Total: -37.07 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -2.02 Total: -34.71 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 34.50 SS G_CDS: -2.92 Total: 31.58 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.45 -11.48 -45.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117374518.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.449 kcal (2) G-P(sol) polarization free energy of solvation -34.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds