Wall clock time and date at job start Sat Apr 11 2020 00:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81395 * 102.99833 * 2 1 4 4 H 1.09001 * 109.47392 * 304.99608 * 3 2 1 5 5 C 1.52994 * 109.47402 * 65.00013 * 3 2 1 6 6 C 1.53006 * 109.47339 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46836 * 299.99668 * 6 5 3 8 8 C 1.52998 * 109.47056 * 60.00367 * 7 6 5 9 9 H 1.09001 * 109.47386 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.47566 * 59.99402 * 8 7 6 11 11 S 1.65600 * 119.99755 * 94.99865 * 10 8 7 12 12 O 1.42091 * 104.28066 * 308.93191 * 11 10 8 13 13 O 1.42099 * 104.27607 * 181.07270 * 11 10 8 14 14 C 1.81402 * 104.44695 * 65.00607 * 11 10 8 15 15 C 1.53007 * 109.46911 * 179.97438 * 14 11 10 16 16 C 1.52998 * 109.46873 * 179.97438 * 15 14 11 17 17 C 1.50699 * 109.46700 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00803 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99889 * 180.02562 * 17 16 15 20 20 N 1.31520 * 120.00186 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00030 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 89.99863 * 21 19 17 23 23 H 1.48503 * 109.47261 * 330.00044 * 21 19 17 24 24 H 1.48500 * 109.47454 * 210.00037 * 21 19 17 25 25 C 1.53004 * 109.46917 * 184.99879 * 3 2 1 26 26 H 1.09000 * 109.47048 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47542 * 300.00203 * 1 2 3 28 28 H 1.09002 * 109.46636 * 60.00423 * 1 2 3 29 29 H 1.09007 * 109.47491 * 59.99786 * 5 3 2 30 30 H 1.09001 * 109.47216 * 299.99668 * 5 3 2 31 31 H 1.08995 * 109.47089 * 179.97438 * 6 5 3 32 32 H 1.09001 * 109.46609 * 59.99883 * 6 5 3 33 33 H 1.08996 * 109.47590 * 299.99998 * 7 6 5 34 34 H 1.09006 * 109.46776 * 179.97438 * 7 6 5 35 35 H 0.96995 * 119.99772 * 275.00355 * 10 8 7 36 36 H 1.08994 * 109.47509 * 59.99699 * 14 11 10 37 37 H 1.09003 * 109.47094 * 299.99092 * 14 11 10 38 38 H 1.09004 * 109.47180 * 59.99690 * 15 14 11 39 39 H 1.08997 * 109.46702 * 299.99861 * 15 14 11 40 40 H 1.09004 * 109.47139 * 60.00071 * 16 15 14 41 41 H 1.08997 * 109.47675 * 299.99671 * 16 15 14 42 42 H 0.96998 * 120.00124 * 180.02562 * 20 19 17 43 43 H 1.08995 * 109.47342 * 59.99955 * 25 3 2 44 44 H 1.08996 * 109.47290 * 299.99945 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7428 2.4016 1.3073 6 6 2.0875 3.8923 1.3075 7 6 3.6025 4.0653 1.1822 8 6 4.0818 3.4313 -0.1251 9 1 5.1610 3.5550 -0.2147 10 7 3.4202 4.0857 -1.2567 11 16 4.1712 5.3323 -2.0468 12 8 4.5523 6.2256 -1.0097 13 8 3.2407 5.7246 -3.0466 14 6 5.6348 4.5726 -2.8027 15 6 6.4217 5.6359 -3.5716 16 6 7.6565 4.9954 -4.2086 17 6 8.4311 6.0426 -4.9665 18 1 8.0783 7.0630 -4.9911 19 6 9.5904 5.6979 -5.6286 20 7 10.2667 6.6119 -6.2896 21 14 10.2004 3.9329 -5.5868 22 1 9.6194 3.1811 -6.7281 23 1 9.7848 3.2955 -4.3114 24 1 11.6819 3.9186 -5.6874 25 6 3.7370 1.9411 -0.1257 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 2.2354 1.9150 2.1492 30 1 0.6635 2.2779 1.3968 31 1 1.7456 4.3441 2.2387 32 1 1.5952 4.3791 0.4656 33 1 4.0947 3.5785 2.0240 34 1 3.8480 5.1274 1.1819 35 1 2.5423 3.7888 -1.5429 36 1 5.3224 3.7854 -3.4887 37 1 6.2662 4.1459 -2.0232 38 1 6.7341 6.4235 -2.8859 39 1 5.7901 6.0623 -4.3510 40 1 7.3443 4.2076 -4.8943 41 1 8.2879 4.5693 -3.4289 42 1 11.0820 6.3694 -6.7557 43 1 4.0784 1.4894 -1.0570 44 1 4.2296 1.4546 0.7161 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117374520.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:31:09 Heat of formation + Delta-G solvation = -128.241394 kcal Electronic energy + Delta-G solvation = -23468.604952 eV Core-core repulsion = 20058.031944 eV Total energy + Delta-G solvation = -3410.573008 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.122 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.08780 -38.13643 -37.01808 -36.50045 -34.66307 -34.24451 -31.80884 -30.52677 -30.15131 -29.41041 -25.40361 -23.70617 -23.57966 -22.28774 -21.07797 -19.97299 -18.95927 -18.82647 -17.46675 -17.26592 -17.10001 -16.48031 -16.23985 -16.15861 -15.65816 -15.44763 -14.94305 -14.86207 -14.42646 -14.29258 -14.08422 -13.99955 -13.74578 -13.64198 -13.25089 -13.19038 -13.12106 -13.11259 -12.75604 -12.68418 -12.67486 -12.54030 -12.45887 -11.84132 -11.75888 -11.64275 -11.59205 -11.40871 -11.24938 -11.15045 -10.77444 -10.72158 -10.28266 -8.65407 -8.29877 -6.35859 -0.72271 0.76238 1.37313 1.39652 1.51277 1.66953 1.80528 2.36515 2.77608 3.05374 3.25088 3.60533 3.68041 3.69681 3.86284 3.95260 4.12210 4.19827 4.29768 4.32311 4.35123 4.37201 4.37955 4.45220 4.59274 4.63113 4.70369 4.86433 4.90265 4.94737 4.96854 5.08874 5.11562 5.19688 5.30160 5.34837 5.39176 5.46454 5.48734 5.62848 6.08513 6.25295 6.72608 7.28865 8.87146 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.017657 B = 0.003011 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.412352 B = 9297.535429 C =10175.151783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.306 6.306 3 C -0.046 4.046 4 H 0.089 0.911 5 C -0.107 4.107 6 C -0.115 4.115 7 C -0.143 4.143 8 C 0.152 3.848 9 H 0.105 0.895 10 N -1.103 6.103 11 S 2.623 3.377 12 O -0.985 6.985 13 O -0.998 6.998 14 C -0.613 4.613 15 C -0.104 4.104 16 C -0.005 4.005 17 C -0.544 4.544 18 H 0.029 0.971 19 C 0.000 4.000 20 N -0.953 5.953 21 Si 0.955 3.045 22 H -0.266 1.266 23 H -0.237 1.237 24 H -0.286 1.286 25 C -0.103 4.103 26 H 0.106 0.894 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.421 0.579 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.030 0.970 41 H 0.034 0.966 42 H 0.267 0.733 43 H 0.084 0.916 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.402 -16.334 18.832 32.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.077 6.077 3 C -0.174 4.174 4 H 0.107 0.893 5 C -0.146 4.146 6 C -0.154 4.154 7 C -0.182 4.182 8 C 0.044 3.956 9 H 0.123 0.877 10 N -0.864 5.864 11 S 2.718 3.282 12 O -0.975 6.975 13 O -0.988 6.988 14 C -0.743 4.743 15 C -0.143 4.143 16 C -0.044 4.044 17 C -0.582 4.582 18 H 0.047 0.953 19 C -0.196 4.196 20 N -0.593 5.593 21 Si 0.778 3.222 22 H -0.191 1.191 23 H -0.160 1.160 24 H -0.212 1.212 25 C -0.143 4.143 26 H 0.125 0.875 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.258 0.742 36 H 0.173 0.827 37 H 0.174 0.826 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.048 0.952 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.103 0.897 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.765 -16.271 18.769 31.744 hybrid contribution -0.269 0.359 -0.838 0.950 sum -20.035 -15.912 17.931 31.242 Atomic orbital electron populations 1.23433 0.92000 1.07148 1.05661 1.87060 1.10006 1.12638 1.98017 1.23175 1.00265 0.92256 1.01729 0.89326 1.21841 1.01312 0.95390 0.96090 1.21495 0.95840 0.95703 1.02383 1.22106 0.96922 1.01734 0.97410 1.20996 0.97333 0.91929 0.85340 0.87745 1.55502 1.31075 1.55512 1.44356 1.04405 0.75885 0.74327 0.73560 1.93545 1.84867 1.62784 1.56302 1.93536 1.61359 1.81771 1.62155 1.30536 1.18867 1.11541 1.13404 1.21171 0.97744 0.96497 0.98893 1.19505 0.93326 0.95617 0.95904 1.21571 1.08587 0.96198 1.31871 0.95256 1.26125 0.96553 1.02831 0.94131 1.70087 1.17849 1.36440 1.34963 0.85591 0.77208 0.78899 0.80549 1.19072 1.15961 1.21167 1.21652 0.92964 0.94707 1.04932 0.87492 0.89480 0.90038 0.90208 0.91298 0.90807 0.92424 0.89006 0.91748 0.74213 0.82728 0.82574 0.91800 0.92152 0.95191 0.94785 0.92441 0.89691 0.88528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.45 113.37 1.19 0.17 16 2 S -0.31 -4.25 21.79 -56.49 -1.23 -5.48 16 3 C -0.05 -0.52 2.47 30.59 0.08 -0.44 16 4 H 0.09 0.99 6.51 -2.39 -0.02 0.97 16 5 C -0.11 -1.07 5.11 30.59 0.16 -0.91 16 6 C -0.11 -1.38 5.77 30.60 0.18 -1.21 16 7 C -0.14 -1.97 5.64 30.59 0.17 -1.80 16 8 C 0.15 2.03 2.88 44.98 0.13 2.16 16 9 H 0.10 1.17 7.15 -2.39 -0.02 1.16 16 10 N -1.10 -18.07 4.63 -169.45 -0.78 -18.86 16 11 S 2.62 66.59 5.38 -56.49 -0.30 66.29 16 12 O -0.99 -30.91 17.11 -127.65 -2.18 -33.09 16 13 O -1.00 -32.63 18.08 -127.65 -2.31 -34.94 16 14 C -0.61 -15.21 5.96 71.98 0.43 -14.78 16 15 C -0.10 -3.89 5.16 30.60 0.16 -3.74 16 16 C 0.00 -0.22 4.04 29.85 0.12 -0.10 16 17 C -0.54 -31.48 9.66 25.60 0.25 -31.24 16 18 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 19 C 0.00 0.01 5.47 84.65 0.46 0.48 16 20 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 21 Si 0.96 43.05 27.47 68.60 1.88 44.94 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 23 H -0.24 -9.49 6.54 99.48 0.65 -8.84 16 24 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 25 C -0.10 -1.14 4.92 30.58 0.15 -0.99 16 26 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.09 0.61 7.14 -2.39 -0.02 0.59 16 28 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.07 0.61 6.92 -2.39 -0.02 0.59 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.79 7.45 -2.39 -0.02 0.77 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 1.20 7.42 -2.38 -0.02 1.18 16 35 H 0.42 5.72 6.78 -96.75 -0.66 5.07 16 36 H 0.15 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.16 2.96 7.44 -2.39 -0.02 2.94 16 38 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.06 2.34 8.14 -2.39 -0.02 2.33 16 40 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16 41 H 0.03 1.43 7.20 -2.39 -0.02 1.41 16 42 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 43 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -77.95 365.98 -0.90 -78.84 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.27 Total: 14.61 kcal Atomic # 6 Polarization: -55.87 SS G_CDS: 3.46 Total: -52.40 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -0.49 Total: -78.77 kcal Atomic # 8 Polarization: -63.54 SS G_CDS: -4.49 Total: -68.03 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.88 Total: 44.94 kcal Atomic # 16 Polarization: 62.35 SS G_CDS: -1.53 Total: 60.81 kcal Total: -77.95 -0.90 -78.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117374520.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.398 kcal (2) G-P(sol) polarization free energy of solvation -77.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds