Wall clock time and date at job start Sat Apr 11 2020 00:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81395 * 103.00177 * 2 1 4 4 H 1.09004 * 109.46888 * 54.99800 * 3 2 1 5 5 C 1.53005 * 109.47411 * 295.00432 * 3 2 1 6 6 C 1.53001 * 109.47277 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.46917 * 60.00117 * 6 5 3 8 8 C 1.53000 * 109.47269 * 299.99746 * 7 6 5 9 9 H 1.08999 * 109.47533 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.47051 * 300.00462 * 8 7 6 11 11 S 1.65603 * 119.99490 * 264.99884 * 10 8 7 12 12 O 1.42102 * 104.27965 * 308.92411 * 11 10 8 13 13 O 1.42104 * 104.27544 * 181.07037 * 11 10 8 14 14 C 1.81396 * 104.45253 * 64.99880 * 11 10 8 15 15 C 1.53001 * 109.47186 * 179.97438 * 14 11 10 16 16 C 1.53000 * 109.46886 * 179.97438 * 15 14 11 17 17 C 1.50703 * 109.46912 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99751 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00001 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99923 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 120.00006 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47093 * 90.00088 * 21 19 17 23 23 H 1.48500 * 109.47049 * 210.00797 * 21 19 17 24 24 H 1.48504 * 109.47189 * 330.00185 * 21 19 17 25 25 C 1.52995 * 109.47639 * 175.00051 * 3 2 1 26 26 H 1.09000 * 109.46956 * 299.99814 * 1 2 3 27 27 H 1.08998 * 109.47653 * 59.99801 * 1 2 3 28 28 H 1.09000 * 109.47097 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47014 * 299.99925 * 5 3 2 30 30 H 1.09003 * 109.47003 * 59.99246 * 5 3 2 31 31 H 1.09006 * 109.46683 * 179.97438 * 6 5 3 32 32 H 1.08995 * 109.47358 * 300.00107 * 6 5 3 33 33 H 1.08995 * 109.46970 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.47633 * 59.99625 * 7 6 5 35 35 H 0.96997 * 120.00082 * 84.99746 * 10 8 7 36 36 H 1.09001 * 109.46704 * 59.99668 * 14 11 10 37 37 H 1.09002 * 109.47134 * 299.99954 * 14 11 10 38 38 H 1.09001 * 109.46652 * 60.00206 * 15 14 11 39 39 H 1.08992 * 109.47514 * 300.00295 * 15 14 11 40 40 H 1.09002 * 109.47398 * 300.00496 * 16 15 14 41 41 H 1.09001 * 109.47194 * 60.00677 * 16 15 14 42 42 H 0.97000 * 119.99684 * 180.02562 * 20 19 17 43 43 H 1.09005 * 109.46729 * 60.00207 * 25 3 2 44 44 H 1.08998 * 109.46758 * 300.00709 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.7294 2.2541 0.8418 5 6 1.7428 2.4016 -1.3073 6 6 2.0864 3.8925 -1.3070 7 6 3.6012 4.0667 -1.1811 8 6 4.0806 3.4326 0.1262 9 1 5.1597 3.5570 0.2161 10 7 3.4181 4.0862 1.2576 11 16 4.1681 5.3331 2.0484 12 8 5.4605 4.8276 2.3538 13 8 3.2588 5.6910 3.0802 14 6 4.2774 6.6539 0.8099 15 6 4.9597 7.8764 1.4270 16 6 5.0525 8.9903 0.3822 17 6 5.7252 10.1942 0.9898 18 1 6.0540 10.1674 2.0181 19 6 5.9208 11.3299 0.2329 20 7 6.5083 12.3803 0.7630 21 14 5.3527 11.3760 -1.5461 22 1 3.9559 11.8766 -1.6068 23 1 6.2369 12.2799 -2.3248 24 1 5.4137 10.0081 -2.1208 25 6 3.7369 1.9412 0.1257 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 2.2353 1.9151 -2.1491 30 1 0.6635 2.2778 -1.3969 31 1 1.7453 4.3442 -2.2386 32 1 1.5936 4.3789 -0.4652 33 1 3.8461 5.1287 -1.1814 34 1 4.0942 3.5803 -2.0229 35 1 2.5403 3.7886 1.5436 36 1 3.2750 6.9259 0.4794 37 1 4.8590 6.3048 -0.0433 38 1 5.9622 7.6046 1.7578 39 1 4.3779 8.2254 2.2800 40 1 5.6347 8.6410 -0.4706 41 1 4.0503 9.2622 0.0510 42 1 6.6455 13.1794 0.2305 43 1 4.2295 1.4546 -0.7162 44 1 4.0784 1.4894 1.0570 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117374524.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:31:13 Heat of formation + Delta-G solvation = -103.699413 kcal Electronic energy + Delta-G solvation = -23598.583429 eV Core-core repulsion = 20189.074641 eV Total energy + Delta-G solvation = -3409.508788 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.122 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.51158 -36.96477 -35.83593 -34.85820 -33.96056 -32.26103 -31.31345 -29.95004 -28.94346 -28.39185 -23.75237 -23.08968 -23.02735 -20.71461 -20.17855 -19.12492 -17.89612 -16.93748 -16.65186 -16.43386 -16.06389 -15.63309 -15.34693 -14.97661 -14.40239 -14.35718 -14.22323 -13.96401 -13.79337 -13.43060 -13.11155 -12.90580 -12.62711 -12.46582 -12.25395 -12.15256 -12.12453 -11.95513 -11.88874 -11.65005 -11.58544 -11.25106 -11.04930 -10.97954 -10.93469 -10.64097 -10.22071 -10.11746 -9.89732 -9.82564 -9.43317 -9.27371 -8.60870 -8.08572 -6.10318 -4.09698 0.36125 1.26248 2.15891 2.74165 3.24429 3.32073 3.33666 3.84785 4.15749 4.15925 4.32621 4.38118 4.41118 4.64271 4.68291 4.70502 4.74297 4.84645 4.92246 4.94085 5.01061 5.09771 5.17813 5.22115 5.24021 5.31029 5.47817 5.57422 5.60885 5.66484 5.73921 5.83473 5.87440 6.00443 6.11359 6.23817 6.64050 6.78794 7.09808 7.23945 7.68957 8.45660 8.94235 9.50666 11.02998 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.021962 B = 0.002965 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.617001 B = 9442.525242 C =10208.906268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.265 6.265 3 C -0.052 4.052 4 H 0.088 0.912 5 C -0.114 4.114 6 C -0.116 4.116 7 C -0.150 4.150 8 C 0.153 3.847 9 H 0.102 0.898 10 N -1.118 6.118 11 S 2.601 3.399 12 O -0.959 6.959 13 O -0.962 6.962 14 C -0.617 4.617 15 C -0.098 4.098 16 C -0.004 4.004 17 C -0.527 4.527 18 H 0.074 0.926 19 C 0.067 3.933 20 N -0.900 5.900 21 Si 0.881 3.119 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.266 1.266 25 C -0.101 4.101 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.412 0.588 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.020 0.980 41 H 0.015 0.985 42 H 0.264 0.736 43 H 0.087 0.913 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.063 -24.843 -6.252 28.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.036 6.036 3 C -0.181 4.181 4 H 0.106 0.894 5 C -0.153 4.153 6 C -0.156 4.156 7 C -0.189 4.189 8 C 0.044 3.956 9 H 0.120 0.880 10 N -0.876 5.876 11 S 2.696 3.304 12 O -0.948 6.948 13 O -0.952 6.952 14 C -0.748 4.748 15 C -0.137 4.137 16 C -0.042 4.042 17 C -0.565 4.565 18 H 0.093 0.907 19 C -0.134 4.134 20 N -0.538 5.538 21 Si 0.708 3.292 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.190 1.190 25 C -0.141 4.141 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.118 0.882 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.247 0.753 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.038 0.962 41 H 0.034 0.966 42 H 0.074 0.926 43 H 0.105 0.895 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.874 -25.587 -5.406 28.323 hybrid contribution -1.759 1.305 -1.514 2.662 sum -12.632 -24.282 -6.919 28.233 Atomic orbital electron populations 1.23395 0.94249 1.06415 1.04997 1.86910 1.07356 1.11393 1.97923 1.23202 1.00329 0.93201 1.01336 0.89405 1.21889 1.00934 0.96121 0.96372 1.21510 0.96084 0.95378 1.02601 1.22257 0.96759 1.02201 0.97642 1.20835 0.97549 0.91969 0.85219 0.87970 1.55862 1.32681 1.52001 1.47106 1.05295 0.74196 0.75191 0.75725 1.93583 1.41039 1.77580 1.82640 1.93588 1.64370 1.83728 1.53515 1.30713 1.10664 1.16080 1.17348 1.21313 0.99595 0.92468 1.00308 1.19523 0.96849 0.93526 0.94331 1.21134 1.38695 0.96432 1.00259 0.90738 1.25031 0.94625 0.95448 0.98333 1.69910 1.42979 1.03977 1.36980 0.86773 0.78818 0.78265 0.85366 1.20259 1.21279 1.19048 1.21593 0.92621 0.95538 1.04357 0.90473 0.90415 0.88197 0.90445 0.91897 0.91155 0.91442 0.90479 0.90121 0.75330 0.85236 0.85341 0.90959 0.91026 0.96186 0.96648 0.92615 0.89492 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.45 101.05 1.06 0.39 16 2 S -0.26 -2.09 21.79 -107.50 -2.34 -4.43 16 3 C -0.05 -0.36 2.47 -26.73 -0.07 -0.42 16 4 H 0.09 0.60 6.50 -51.92 -0.34 0.26 16 5 C -0.11 -0.69 5.11 -26.73 -0.14 -0.82 16 6 C -0.12 -0.74 5.77 -26.73 -0.15 -0.90 16 7 C -0.15 -1.04 5.60 -26.73 -0.15 -1.19 16 8 C 0.15 1.23 3.02 -67.91 -0.21 1.02 16 9 H 0.10 0.85 7.48 -51.93 -0.39 0.46 16 10 N -1.12 -10.44 4.63 -4.87 -0.02 -10.46 16 11 S 2.60 35.03 5.44 -107.50 -0.58 34.45 16 12 O -0.96 -15.87 17.39 -57.54 -1.00 -16.87 16 13 O -0.96 -16.04 18.08 -57.54 -1.04 -17.08 16 14 C -0.62 -8.33 5.22 37.16 0.19 -8.14 16 15 C -0.10 -1.84 5.16 -26.73 -0.14 -1.98 16 16 C 0.00 -0.08 4.04 -27.88 -0.11 -0.20 16 17 C -0.53 -14.83 9.66 -34.44 -0.33 -15.16 16 18 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 19 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 20 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 21 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 25 C -0.10 -0.74 4.92 -26.71 -0.13 -0.87 16 26 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 27 H 0.08 0.37 7.14 -51.92 -0.37 0.00 16 28 H 0.10 0.47 8.14 -51.92 -0.42 0.04 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.35 6.92 -51.93 -0.36 -0.01 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.44 7.44 -51.93 -0.39 0.05 16 33 H 0.08 0.57 5.78 -51.93 -0.30 0.27 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.41 3.25 6.78 -34.48 -0.23 3.01 16 36 H 0.13 1.49 8.14 -51.92 -0.42 1.07 16 37 H 0.13 1.46 6.77 -51.92 -0.35 1.11 16 38 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 41 H 0.02 0.34 7.57 -51.93 -0.39 -0.06 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 363.71 15.07 5.48 5.48 Total: -1.00 -35.19 363.71 -10.99 -46.18 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -7.31 Total: -0.55 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: -0.27 Total: -26.44 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.75 Total: -37.21 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -2.04 Total: -33.95 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Atomic # 16 Polarization: 32.94 SS G_CDS: -2.93 Total: 30.01 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.19 -10.99 -46.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117374524.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.521 kcal (2) G-P(sol) polarization free energy of solvation -35.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds