Wall clock time and date at job start Sat Apr 11 2020 00:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81395 * 103.00177 * 2 1 4 4 H 1.09004 * 109.46888 * 54.99800 * 3 2 1 5 5 C 1.53005 * 109.47411 * 295.00432 * 3 2 1 6 6 C 1.53001 * 109.47277 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.46917 * 60.00117 * 6 5 3 8 8 C 1.53000 * 109.47269 * 299.99746 * 7 6 5 9 9 H 1.08999 * 109.47533 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.47051 * 300.00462 * 8 7 6 11 11 S 1.65603 * 119.99490 * 264.99884 * 10 8 7 12 12 O 1.42102 * 104.27965 * 308.92411 * 11 10 8 13 13 O 1.42104 * 104.27544 * 181.07037 * 11 10 8 14 14 C 1.81396 * 104.45253 * 64.99880 * 11 10 8 15 15 C 1.53001 * 109.47186 * 179.97438 * 14 11 10 16 16 C 1.53000 * 109.46886 * 179.97438 * 15 14 11 17 17 C 1.50703 * 109.46912 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99751 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00001 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99923 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 120.00006 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47093 * 90.00088 * 21 19 17 23 23 H 1.48500 * 109.47049 * 210.00797 * 21 19 17 24 24 H 1.48504 * 109.47189 * 330.00185 * 21 19 17 25 25 C 1.52995 * 109.47639 * 175.00051 * 3 2 1 26 26 H 1.09000 * 109.46956 * 299.99814 * 1 2 3 27 27 H 1.08998 * 109.47653 * 59.99801 * 1 2 3 28 28 H 1.09000 * 109.47097 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47014 * 299.99925 * 5 3 2 30 30 H 1.09003 * 109.47003 * 59.99246 * 5 3 2 31 31 H 1.09006 * 109.46683 * 179.97438 * 6 5 3 32 32 H 1.08995 * 109.47358 * 300.00107 * 6 5 3 33 33 H 1.08995 * 109.46970 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.47633 * 59.99625 * 7 6 5 35 35 H 0.96997 * 120.00082 * 84.99746 * 10 8 7 36 36 H 1.09001 * 109.46704 * 59.99668 * 14 11 10 37 37 H 1.09002 * 109.47134 * 299.99954 * 14 11 10 38 38 H 1.09001 * 109.46652 * 60.00206 * 15 14 11 39 39 H 1.08992 * 109.47514 * 300.00295 * 15 14 11 40 40 H 1.09002 * 109.47398 * 300.00496 * 16 15 14 41 41 H 1.09001 * 109.47194 * 60.00677 * 16 15 14 42 42 H 0.97000 * 119.99684 * 180.02562 * 20 19 17 43 43 H 1.09005 * 109.46729 * 60.00207 * 25 3 2 44 44 H 1.08998 * 109.46758 * 300.00709 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.7294 2.2541 0.8418 5 6 1.7428 2.4016 -1.3073 6 6 2.0864 3.8925 -1.3070 7 6 3.6012 4.0667 -1.1811 8 6 4.0806 3.4326 0.1262 9 1 5.1597 3.5570 0.2161 10 7 3.4181 4.0862 1.2576 11 16 4.1681 5.3331 2.0484 12 8 5.4605 4.8276 2.3538 13 8 3.2588 5.6910 3.0802 14 6 4.2774 6.6539 0.8099 15 6 4.9597 7.8764 1.4270 16 6 5.0525 8.9903 0.3822 17 6 5.7252 10.1942 0.9898 18 1 6.0540 10.1674 2.0181 19 6 5.9208 11.3299 0.2329 20 7 6.5083 12.3803 0.7630 21 14 5.3527 11.3760 -1.5461 22 1 3.9559 11.8766 -1.6068 23 1 6.2369 12.2799 -2.3248 24 1 5.4137 10.0081 -2.1208 25 6 3.7369 1.9412 0.1257 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 2.2353 1.9151 -2.1491 30 1 0.6635 2.2778 -1.3969 31 1 1.7453 4.3442 -2.2386 32 1 1.5936 4.3789 -0.4652 33 1 3.8461 5.1287 -1.1814 34 1 4.0942 3.5803 -2.0229 35 1 2.5403 3.7886 1.5436 36 1 3.2750 6.9259 0.4794 37 1 4.8590 6.3048 -0.0433 38 1 5.9622 7.6046 1.7578 39 1 4.3779 8.2254 2.2800 40 1 5.6347 8.6410 -0.4706 41 1 4.0503 9.2622 0.0510 42 1 6.6455 13.1794 0.2305 43 1 4.2295 1.4546 -0.7162 44 1 4.0784 1.4894 1.0570 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117374524.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:31:13 Heat of formation + Delta-G solvation = -128.238842 kcal Electronic energy + Delta-G solvation = -23599.647539 eV Core-core repulsion = 20189.074641 eV Total energy + Delta-G solvation = -3410.572897 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.122 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.09919 -38.17094 -37.04881 -36.50389 -34.63984 -34.25148 -31.85676 -30.53170 -30.12454 -29.40730 -25.42181 -23.69158 -23.58331 -22.26385 -21.05687 -19.99743 -18.97105 -18.84796 -17.43745 -17.28319 -17.19985 -16.45223 -16.20966 -16.15334 -15.75427 -15.40676 -14.98923 -14.81224 -14.43334 -14.29530 -14.10449 -13.97248 -13.73230 -13.63171 -13.24303 -13.20863 -13.19604 -13.08107 -12.81632 -12.71603 -12.68297 -12.48663 -12.42489 -11.83462 -11.75897 -11.63625 -11.55202 -11.39158 -11.30377 -11.09589 -10.76666 -10.73141 -10.29349 -8.67256 -8.28948 -6.34979 -0.73557 0.75186 1.37721 1.40609 1.52104 1.66234 1.79436 2.37360 2.77138 3.06384 3.23141 3.61758 3.67846 3.69584 3.83476 3.93794 4.10927 4.20200 4.29347 4.33988 4.34821 4.35762 4.42941 4.45154 4.59531 4.64532 4.70146 4.84500 4.89958 4.96690 4.98812 5.08005 5.12565 5.20963 5.31719 5.32080 5.37417 5.47958 5.51578 5.63853 6.08201 6.26280 6.73632 7.29674 8.88127 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.021962 B = 0.002965 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.617001 B = 9442.525242 C =10208.906268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.312 6.312 3 C -0.044 4.044 4 H 0.088 0.912 5 C -0.108 4.108 6 C -0.117 4.117 7 C -0.150 4.150 8 C 0.148 3.852 9 H 0.100 0.900 10 N -1.102 6.102 11 S 2.620 3.380 12 O -0.993 6.993 13 O -0.997 6.997 14 C -0.609 4.609 15 C -0.104 4.104 16 C -0.004 4.004 17 C -0.544 4.544 18 H 0.028 0.972 19 C -0.001 4.001 20 N -0.954 5.954 21 Si 0.956 3.044 22 H -0.265 1.265 23 H -0.287 1.287 24 H -0.235 1.235 25 C -0.098 4.098 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.421 0.579 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.034 0.966 41 H 0.032 0.968 42 H 0.266 0.734 43 H 0.096 0.904 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.922 -26.338 -9.214 31.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.083 6.083 3 C -0.173 4.173 4 H 0.106 0.894 5 C -0.147 4.147 6 C -0.156 4.156 7 C -0.189 4.189 8 C 0.040 3.960 9 H 0.118 0.882 10 N -0.864 5.864 11 S 2.716 3.284 12 O -0.983 6.983 13 O -0.987 6.987 14 C -0.740 4.740 15 C -0.143 4.143 16 C -0.042 4.042 17 C -0.582 4.582 18 H 0.046 0.954 19 C -0.198 4.198 20 N -0.594 5.594 21 Si 0.779 3.221 22 H -0.190 1.190 23 H -0.213 1.213 24 H -0.158 1.158 25 C -0.139 4.139 26 H 0.100 0.900 27 H 0.106 0.894 28 H 0.125 0.875 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.258 0.742 36 H 0.176 0.824 37 H 0.175 0.825 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.075 0.925 43 H 0.114 0.886 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.744 -27.114 -8.348 31.101 hybrid contribution -1.162 1.727 -0.501 2.141 sum -13.906 -25.387 -8.848 30.268 Atomic orbital electron populations 1.23428 0.91753 1.07172 1.05714 1.87074 1.10245 1.12971 1.98035 1.23180 0.99887 0.92168 1.02024 0.89398 1.21846 1.01338 0.95889 0.95644 1.21533 0.95621 0.95409 1.03051 1.22289 0.97314 1.02244 0.97068 1.21037 0.97445 0.92314 0.85218 0.88217 1.55450 1.32950 1.50643 1.47373 1.04427 0.73137 0.75434 0.75374 1.93541 1.42952 1.78350 1.83428 1.93538 1.65057 1.84559 1.55567 1.30621 1.12238 1.13393 1.17778 1.21174 0.99812 0.93836 0.99466 1.19498 0.96999 0.92391 0.95346 1.21575 1.38879 0.99025 0.98719 0.95388 1.26146 0.94668 0.94758 1.04201 1.70092 1.44962 1.05005 1.39360 0.85574 0.78468 0.79833 0.78257 1.19032 1.21343 1.15753 1.21566 0.93178 0.94951 1.04171 0.90038 0.89359 0.87483 0.90330 0.91232 0.90307 0.91477 0.90319 0.88687 0.74180 0.82355 0.82473 0.91993 0.92132 0.94727 0.95007 0.92486 0.88561 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.45 113.37 1.18 0.17 16 2 S -0.31 -4.51 21.79 -56.49 -1.23 -5.74 16 3 C -0.04 -0.52 2.47 30.59 0.08 -0.44 16 4 H 0.09 1.02 6.50 -2.39 -0.02 1.00 16 5 C -0.11 -0.98 5.11 30.60 0.16 -0.83 16 6 C -0.12 -1.07 5.77 30.59 0.18 -0.89 16 7 C -0.15 -1.54 5.60 30.59 0.17 -1.37 16 8 C 0.15 2.02 3.02 45.01 0.14 2.15 16 9 H 0.10 1.45 7.48 -2.39 -0.02 1.43 16 10 N -1.10 -18.33 4.63 -169.33 -0.78 -19.11 16 11 S 2.62 67.43 5.44 -56.49 -0.31 67.12 16 12 O -0.99 -32.47 17.39 -127.65 -2.22 -34.69 16 13 O -1.00 -32.73 18.08 -127.65 -2.31 -35.04 16 14 C -0.61 -14.76 5.22 71.98 0.38 -14.39 16 15 C -0.10 -3.83 5.16 30.59 0.16 -3.67 16 16 C 0.00 -0.17 4.04 29.85 0.12 -0.05 16 17 C -0.54 -31.18 9.66 25.60 0.25 -30.93 16 18 H 0.03 1.79 7.99 -2.91 -0.02 1.76 16 19 C 0.00 -0.07 5.47 84.65 0.46 0.39 16 20 N -0.95 -59.98 13.96 21.45 0.30 -59.68 16 21 Si 0.96 42.43 27.47 68.60 1.88 44.31 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 24 H -0.23 -9.17 6.54 99.48 0.65 -8.52 16 25 C -0.10 -1.27 4.92 30.61 0.15 -1.12 16 26 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.09 0.61 7.14 -2.39 -0.02 0.59 16 28 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.56 6.92 -2.39 -0.02 0.54 16 31 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.07 0.63 7.44 -2.39 -0.02 0.61 16 33 H 0.08 0.80 5.78 -2.39 -0.01 0.79 16 34 H 0.09 0.74 8.14 -2.38 -0.02 0.73 16 35 H 0.42 5.77 6.78 -96.75 -0.66 5.12 16 36 H 0.16 2.97 8.14 -2.39 -0.02 2.95 16 37 H 0.16 2.93 6.77 -2.39 -0.02 2.91 16 38 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.03 1.42 7.20 -2.39 -0.02 1.40 16 41 H 0.03 1.29 7.57 -2.39 -0.02 1.28 16 42 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 43 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -78.39 363.71 -0.98 -79.37 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.27 Total: 14.41 kcal Atomic # 6 Polarization: -54.38 SS G_CDS: 3.42 Total: -50.96 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -0.48 Total: -78.79 kcal Atomic # 8 Polarization: -65.20 SS G_CDS: -4.53 Total: -69.72 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.88 Total: 44.31 kcal Atomic # 16 Polarization: 62.93 SS G_CDS: -1.54 Total: 61.39 kcal Total: -78.39 -0.98 -79.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117374524.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.871 kcal (2) G-P(sol) polarization free energy of solvation -78.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds