Wall clock time and date at job start Sat Apr 11 2020 00:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81396 * 103.00124 * 2 1 4 4 H 1.09001 * 109.47539 * 305.00124 * 3 2 1 5 5 C 1.53005 * 109.47395 * 64.99930 * 3 2 1 6 6 C 1.52999 * 109.47201 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.46798 * 299.99692 * 6 5 3 8 8 C 1.52998 * 109.47236 * 60.00755 * 7 6 5 9 9 H 1.09003 * 109.47259 * 59.99084 * 8 7 6 10 10 N 1.46498 * 109.47034 * 179.97438 * 8 7 6 11 11 S 1.65602 * 119.99612 * 264.71801 * 10 8 7 12 12 O 1.42109 * 104.27511 * 181.34803 * 11 10 8 13 13 O 1.42098 * 104.28120 * 309.20801 * 11 10 8 14 14 C 1.81394 * 104.44973 * 65.28269 * 11 10 8 15 15 C 1.53003 * 109.47387 * 179.97438 * 14 11 10 16 16 C 1.53002 * 109.47130 * 179.97438 * 15 14 11 17 17 C 1.50692 * 109.47012 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00112 * 0.02562 * 17 16 15 19 19 C 1.37882 * 120.00231 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99857 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00269 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47359 * 89.99846 * 21 19 17 23 23 H 1.48501 * 109.47327 * 209.99977 * 21 19 17 24 24 H 1.48497 * 109.47201 * 330.00278 * 21 19 17 25 25 C 1.53003 * 109.47291 * 185.00097 * 3 2 1 26 26 H 1.09000 * 109.47097 * 59.99821 * 1 2 3 27 27 H 1.08997 * 109.47143 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47283 * 299.99915 * 1 2 3 29 29 H 1.09001 * 109.46619 * 59.99630 * 5 3 2 30 30 H 1.09003 * 109.46994 * 300.00374 * 5 3 2 31 31 H 1.09003 * 109.46618 * 180.02562 * 6 5 3 32 32 H 1.08990 * 109.47344 * 60.00361 * 6 5 3 33 33 H 1.08994 * 109.47642 * 299.99934 * 7 6 5 34 34 H 1.09003 * 109.46931 * 180.02562 * 7 6 5 35 35 H 0.97001 * 120.00384 * 85.00279 * 10 8 7 36 36 H 1.09009 * 109.47044 * 299.99503 * 14 11 10 37 37 H 1.09001 * 109.47747 * 59.99183 * 14 11 10 38 38 H 1.08994 * 109.46789 * 299.99279 * 15 14 11 39 39 H 1.08993 * 109.47045 * 59.99537 * 15 14 11 40 40 H 1.09003 * 109.47270 * 300.00013 * 16 15 14 41 41 H 1.09000 * 109.46896 * 60.00012 * 16 15 14 42 42 H 0.96993 * 120.00008 * 179.97438 * 20 19 17 43 43 H 1.08994 * 109.47362 * 60.00284 * 25 3 2 44 44 H 1.08994 * 109.47180 * 299.99622 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7295 2.2542 -0.8418 5 6 1.7428 2.4016 1.3074 6 6 2.0864 3.8925 1.3070 7 6 3.6013 4.0666 1.1811 8 6 4.0805 3.4326 -0.1263 9 1 3.5876 3.9189 -0.9681 10 7 5.5309 3.5999 -0.2471 11 16 6.1487 4.8733 -1.1068 12 8 7.5567 4.6950 -1.0341 13 8 5.4667 4.8192 -2.3523 14 6 5.6438 6.3408 -0.1678 15 6 6.1615 7.5982 -0.8691 16 6 5.7350 8.8361 -0.0773 17 6 6.2455 10.0744 -0.7677 18 1 6.8166 9.9874 -1.6803 19 6 5.9825 11.3187 -0.2351 20 7 5.2867 11.4248 0.8758 21 14 6.6147 12.8538 -1.0913 22 1 5.6002 13.3307 -2.0654 23 1 6.8693 13.9138 -0.0829 24 1 7.8770 12.5374 -1.8065 25 6 3.7370 1.9411 -0.1257 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 2.2353 1.9149 2.1491 30 1 0.6635 2.2779 1.3969 31 1 1.7454 4.3441 2.2387 32 1 1.5935 4.3788 0.4654 33 1 4.0942 3.5804 2.0229 34 1 3.8462 5.1288 1.1813 35 1 6.1294 2.9624 0.1729 36 1 4.5559 6.3786 -0.1098 37 1 6.0595 6.2892 0.8385 38 1 7.2492 7.5603 -0.9266 39 1 5.7460 7.6501 -1.8754 40 1 4.6471 8.8738 -0.0201 41 1 6.1502 8.7844 0.9292 42 1 5.1020 12.3001 1.2507 43 1 4.0784 1.4895 -1.0571 44 1 4.2296 1.4546 0.7160 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117374527.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:31:17 Heat of formation + Delta-G solvation = -111.291911 kcal Electronic energy + Delta-G solvation = -23251.409275 eV Core-core repulsion = 19841.571252 eV Total energy + Delta-G solvation = -3409.838023 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.122 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.19193 -36.88772 -35.77516 -34.70667 -34.50312 -32.22993 -31.23393 -29.70432 -28.65111 -27.83268 -23.85297 -23.05043 -22.72469 -20.69275 -20.49057 -19.18198 -17.50486 -17.26317 -16.61347 -16.04425 -15.78584 -15.48905 -15.00328 -14.87016 -14.56421 -14.46774 -14.19313 -14.04449 -13.87940 -13.45787 -13.02186 -12.66686 -12.46351 -12.28767 -12.02567 -11.97814 -11.91723 -11.87121 -11.77533 -11.59949 -11.29586 -11.19976 -11.01815 -10.93669 -10.87064 -10.68628 -10.43075 -10.14113 -9.96846 -9.66978 -9.34642 -9.10328 -8.42477 -8.04527 -6.07605 -4.10510 0.43539 1.30410 2.20259 2.79561 3.29192 3.35432 3.39595 3.92006 4.22247 4.26405 4.39749 4.41679 4.45712 4.69980 4.72964 4.75467 4.79003 4.95837 5.00733 5.00888 5.08769 5.13716 5.22578 5.28946 5.31636 5.36598 5.55688 5.64995 5.66590 5.76910 5.84627 5.85688 5.97230 6.10562 6.24840 6.42883 6.84395 6.88665 7.54755 7.64691 7.90495 8.31069 8.95736 9.54294 11.03627 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.020492 B = 0.002689 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.071322 B =10408.960442 C =11301.997117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.265 6.265 3 C -0.050 4.050 4 H 0.092 0.908 5 C -0.115 4.115 6 C -0.117 4.117 7 C -0.149 4.149 8 C 0.154 3.846 9 H 0.095 0.905 10 N -1.119 6.119 11 S 2.599 3.401 12 O -0.963 6.963 13 O -0.962 6.962 14 C -0.610 4.610 15 C -0.106 4.106 16 C 0.031 3.969 17 C -0.526 4.526 18 H 0.058 0.942 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.894 3.106 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C -0.101 4.101 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.415 0.585 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.261 0.739 43 H 0.081 0.919 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.621 -22.307 2.549 24.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.036 6.036 3 C -0.179 4.179 4 H 0.111 0.889 5 C -0.154 4.154 6 C -0.157 4.157 7 C -0.188 4.188 8 C 0.045 3.955 9 H 0.113 0.887 10 N -0.875 5.875 11 S 2.695 3.305 12 O -0.953 6.953 13 O -0.952 6.952 14 C -0.742 4.742 15 C -0.145 4.145 16 C -0.007 4.007 17 C -0.564 4.564 18 H 0.076 0.924 19 C -0.144 4.144 20 N -0.535 5.535 21 Si 0.722 3.278 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.141 4.141 26 H 0.096 0.904 27 H 0.118 0.882 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.249 0.751 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.100 0.900 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.638 -23.088 1.740 24.713 hybrid contribution -0.735 1.890 0.440 2.075 sum -9.373 -21.198 2.180 23.280 Atomic orbital electron populations 1.23393 0.94172 1.06392 1.05045 1.86893 1.07418 1.11338 1.97944 1.23185 0.99754 0.93350 1.01652 0.88946 1.21908 1.01036 0.96096 0.96376 1.21531 0.95652 0.95431 1.03039 1.22279 0.96228 1.02217 0.98105 1.20787 0.79913 0.96303 0.98533 0.88656 1.55774 1.13563 1.44672 1.73521 1.05351 0.74062 0.75793 0.75319 1.93583 1.29758 1.84979 1.86997 1.93570 1.75654 1.85938 1.40026 1.30658 1.11876 1.17133 1.14511 1.21504 1.00498 0.92990 0.99535 1.19056 0.96932 0.89631 0.95094 1.21254 1.34438 0.91042 1.09698 0.92374 1.25019 0.95128 0.99256 0.94980 1.69952 1.39483 1.24116 1.19904 0.86555 0.79372 0.82605 0.79280 1.20567 1.21173 1.19738 1.21580 0.92616 0.95745 1.04166 0.90437 0.88213 0.90369 0.90456 0.91715 0.90713 0.91288 0.90617 0.90360 0.75132 0.85426 0.85170 0.91559 0.91581 0.96145 0.96118 0.92900 0.89993 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 10.45 101.05 1.06 0.37 16 2 S -0.26 -2.20 21.79 -107.50 -2.34 -4.54 16 3 C -0.05 -0.38 2.65 -26.73 -0.07 -0.45 16 4 H 0.09 0.70 8.14 -51.92 -0.42 0.27 16 5 C -0.11 -0.76 5.11 -26.73 -0.14 -0.89 16 6 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 7 C -0.15 -1.21 5.50 -26.73 -0.15 -1.36 16 8 C 0.15 1.40 2.70 -67.90 -0.18 1.22 16 9 H 0.10 0.93 7.47 -51.93 -0.39 0.54 16 10 N -1.12 -11.38 5.36 -4.87 -0.03 -11.41 16 11 S 2.60 37.15 5.44 -107.50 -0.58 36.57 16 12 O -0.96 -16.73 18.08 -57.54 -1.04 -17.77 16 13 O -0.96 -16.59 17.38 -57.54 -1.00 -17.59 16 14 C -0.61 -9.01 5.25 37.16 0.20 -8.82 16 15 C -0.11 -2.10 5.16 -26.73 -0.14 -2.24 16 16 C 0.03 0.78 4.97 -27.89 -0.14 0.64 16 17 C -0.53 -14.68 9.11 -34.44 -0.31 -15.00 16 18 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 21 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 C -0.10 -0.82 4.74 -26.70 -0.13 -0.95 16 26 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 27 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.38 7.14 -51.93 -0.37 0.01 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.38 6.92 -51.93 -0.36 0.02 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.68 5.82 -51.93 -0.30 0.38 16 35 H 0.41 3.45 8.80 -34.47 -0.30 3.14 16 36 H 0.13 1.65 6.79 -51.92 -0.35 1.30 16 37 H 0.13 1.71 8.14 -51.92 -0.42 1.28 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 372.20 15.07 5.61 5.61 Total: -1.00 -34.49 372.20 -11.46 -45.96 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -7.54 Total: -0.73 kcal Atomic # 6 Polarization: -26.68 SS G_CDS: -0.26 Total: -26.93 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.71 Total: -37.01 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -2.04 Total: -35.35 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 34.95 SS G_CDS: -2.93 Total: 32.03 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.49 -11.46 -45.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117374527.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.336 kcal (2) G-P(sol) polarization free energy of solvation -34.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds