Wall clock time and date at job start Sat Apr 11 2020 00:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81396 * 103.00124 * 2 1 4 4 H 1.09001 * 109.47539 * 305.00124 * 3 2 1 5 5 C 1.53005 * 109.47395 * 64.99930 * 3 2 1 6 6 C 1.52999 * 109.47201 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.46798 * 299.99692 * 6 5 3 8 8 C 1.52998 * 109.47236 * 60.00755 * 7 6 5 9 9 H 1.09003 * 109.47259 * 59.99084 * 8 7 6 10 10 N 1.46498 * 109.47034 * 179.97438 * 8 7 6 11 11 S 1.65602 * 119.99612 * 264.71801 * 10 8 7 12 12 O 1.42109 * 104.27511 * 181.34803 * 11 10 8 13 13 O 1.42098 * 104.28120 * 309.20801 * 11 10 8 14 14 C 1.81394 * 104.44973 * 65.28269 * 11 10 8 15 15 C 1.53003 * 109.47387 * 179.97438 * 14 11 10 16 16 C 1.53002 * 109.47130 * 179.97438 * 15 14 11 17 17 C 1.50692 * 109.47012 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00112 * 0.02562 * 17 16 15 19 19 C 1.37882 * 120.00231 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99857 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00269 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47359 * 89.99846 * 21 19 17 23 23 H 1.48501 * 109.47327 * 209.99977 * 21 19 17 24 24 H 1.48497 * 109.47201 * 330.00278 * 21 19 17 25 25 C 1.53003 * 109.47291 * 185.00097 * 3 2 1 26 26 H 1.09000 * 109.47097 * 59.99821 * 1 2 3 27 27 H 1.08997 * 109.47143 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47283 * 299.99915 * 1 2 3 29 29 H 1.09001 * 109.46619 * 59.99630 * 5 3 2 30 30 H 1.09003 * 109.46994 * 300.00374 * 5 3 2 31 31 H 1.09003 * 109.46618 * 180.02562 * 6 5 3 32 32 H 1.08990 * 109.47344 * 60.00361 * 6 5 3 33 33 H 1.08994 * 109.47642 * 299.99934 * 7 6 5 34 34 H 1.09003 * 109.46931 * 180.02562 * 7 6 5 35 35 H 0.97001 * 120.00384 * 85.00279 * 10 8 7 36 36 H 1.09009 * 109.47044 * 299.99503 * 14 11 10 37 37 H 1.09001 * 109.47747 * 59.99183 * 14 11 10 38 38 H 1.08994 * 109.46789 * 299.99279 * 15 14 11 39 39 H 1.08993 * 109.47045 * 59.99537 * 15 14 11 40 40 H 1.09003 * 109.47270 * 300.00013 * 16 15 14 41 41 H 1.09000 * 109.46896 * 60.00012 * 16 15 14 42 42 H 0.96993 * 120.00008 * 179.97438 * 20 19 17 43 43 H 1.08994 * 109.47362 * 60.00284 * 25 3 2 44 44 H 1.08994 * 109.47180 * 299.99622 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7295 2.2542 -0.8418 5 6 1.7428 2.4016 1.3074 6 6 2.0864 3.8925 1.3070 7 6 3.6013 4.0666 1.1811 8 6 4.0805 3.4326 -0.1263 9 1 3.5876 3.9189 -0.9681 10 7 5.5309 3.5999 -0.2471 11 16 6.1487 4.8733 -1.1068 12 8 7.5567 4.6950 -1.0341 13 8 5.4667 4.8192 -2.3523 14 6 5.6438 6.3408 -0.1678 15 6 6.1615 7.5982 -0.8691 16 6 5.7350 8.8361 -0.0773 17 6 6.2455 10.0744 -0.7677 18 1 6.8166 9.9874 -1.6803 19 6 5.9825 11.3187 -0.2351 20 7 5.2867 11.4248 0.8758 21 14 6.6147 12.8538 -1.0913 22 1 5.6002 13.3307 -2.0654 23 1 6.8693 13.9138 -0.0829 24 1 7.8770 12.5374 -1.8065 25 6 3.7370 1.9411 -0.1257 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 2.2353 1.9149 2.1491 30 1 0.6635 2.2779 1.3969 31 1 1.7454 4.3441 2.2387 32 1 1.5935 4.3788 0.4654 33 1 4.0942 3.5804 2.0229 34 1 3.8462 5.1288 1.1813 35 1 6.1294 2.9624 0.1729 36 1 4.5559 6.3786 -0.1098 37 1 6.0595 6.2892 0.8385 38 1 7.2492 7.5603 -0.9266 39 1 5.7460 7.6501 -1.8754 40 1 4.6471 8.8738 -0.0201 41 1 6.1502 8.7844 0.9292 42 1 5.1020 12.3001 1.2507 43 1 4.0784 1.4895 -1.0571 44 1 4.2296 1.4546 0.7160 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117374527.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:31:16 Heat of formation + Delta-G solvation = -134.254255 kcal Electronic energy + Delta-G solvation = -23252.404997 eV Core-core repulsion = 19841.571252 eV Total energy + Delta-G solvation = -3410.833745 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.122 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.86995 -38.17296 -37.07162 -36.47119 -35.28665 -34.17438 -31.86384 -30.29010 -29.65655 -29.22238 -25.65786 -23.77501 -23.40992 -22.35232 -21.19003 -20.29163 -18.71326 -18.50233 -18.00488 -17.18876 -16.99022 -16.48969 -16.31104 -15.97198 -15.58265 -15.37770 -15.19602 -14.61327 -14.48984 -14.43097 -14.09517 -14.04003 -13.68881 -13.51627 -13.22958 -13.17136 -13.15787 -12.96333 -12.80863 -12.72705 -12.61661 -12.58631 -12.28348 -12.15411 -11.86494 -11.73716 -11.60727 -11.38184 -11.34997 -11.07710 -10.74044 -10.56943 -10.29730 -8.67001 -8.22566 -6.33045 -0.75435 0.73912 1.40376 1.40711 1.52117 1.66924 1.75724 2.39852 2.74412 3.11119 3.21045 3.61618 3.64640 3.73930 3.80369 3.92535 4.06745 4.15330 4.30212 4.33549 4.37119 4.38462 4.39100 4.42852 4.56463 4.64399 4.67142 4.90032 4.91929 4.95997 5.05925 5.06919 5.12561 5.19457 5.26555 5.29512 5.46221 5.49197 5.64340 5.80181 6.10982 6.20535 6.82559 7.36130 8.88820 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.020492 B = 0.002689 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.071322 B =10408.960442 C =11301.997117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.308 6.308 3 C -0.043 4.043 4 H 0.091 0.909 5 C -0.108 4.108 6 C -0.116 4.116 7 C -0.150 4.150 8 C 0.149 3.851 9 H 0.089 0.911 10 N -1.103 6.103 11 S 2.627 3.373 12 O -0.993 6.993 13 O -0.991 6.991 14 C -0.609 4.609 15 C -0.106 4.106 16 C 0.032 3.968 17 C -0.552 4.552 18 H 0.059 0.941 19 C 0.004 3.996 20 N -0.929 5.929 21 Si 0.961 3.039 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.266 1.266 25 C -0.097 4.097 26 H 0.082 0.918 27 H 0.108 0.892 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.427 0.573 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.005 0.995 41 H 0.003 0.997 42 H 0.265 0.735 43 H 0.072 0.928 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.270 -22.856 2.811 25.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.080 6.080 3 C -0.172 4.172 4 H 0.110 0.890 5 C -0.147 4.147 6 C -0.156 4.156 7 C -0.190 4.190 8 C 0.041 3.959 9 H 0.107 0.893 10 N -0.863 5.863 11 S 2.722 3.278 12 O -0.983 6.983 13 O -0.981 6.981 14 C -0.740 4.740 15 C -0.146 4.146 16 C -0.006 4.006 17 C -0.590 4.590 18 H 0.077 0.923 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.786 3.214 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.190 1.190 25 C -0.137 4.137 26 H 0.101 0.899 27 H 0.127 0.873 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.263 0.737 36 H 0.165 0.835 37 H 0.167 0.833 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.023 0.977 41 H 0.022 0.978 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.279 -23.643 1.999 25.478 hybrid contribution -0.595 1.988 0.387 2.111 sum -9.874 -21.655 2.387 23.919 Atomic orbital electron populations 1.23440 0.91497 1.07262 1.05824 1.87033 1.10485 1.12402 1.98054 1.23139 0.99139 0.92657 1.02254 0.89036 1.21862 1.01668 0.95489 0.95715 1.21538 0.94805 0.95832 1.03408 1.22298 0.97145 1.01792 0.97719 1.20952 0.78746 0.97159 0.99064 0.89292 1.55356 1.14465 1.43396 1.73107 1.04276 0.72923 0.75811 0.74746 1.93538 1.31840 1.85518 1.87410 1.93534 1.76064 1.86470 1.41986 1.30615 1.13204 1.15101 1.15046 1.21314 1.00611 0.93296 0.99339 1.18949 0.95688 0.91243 0.94714 1.21742 1.34588 0.92625 1.10043 0.92291 1.25907 0.95290 1.02609 0.95672 1.70060 1.40530 1.25055 1.21233 0.85507 0.79046 0.78567 0.78328 1.19710 1.20560 1.19024 1.21534 0.93338 0.94798 1.04063 0.89920 0.87331 0.89298 0.90325 0.90699 0.89989 0.91370 0.89500 0.90948 0.73670 0.83515 0.83305 0.91700 0.91586 0.97666 0.97814 0.92640 0.90924 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.45 113.37 1.18 0.12 16 2 S -0.31 -4.75 21.79 -56.49 -1.23 -5.98 16 3 C -0.04 -0.58 2.65 30.60 0.08 -0.50 16 4 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 5 C -0.11 -1.20 5.11 30.60 0.16 -1.04 16 6 C -0.12 -1.41 5.92 30.59 0.18 -1.23 16 7 C -0.15 -2.15 5.50 30.59 0.17 -1.98 16 8 C 0.15 2.50 2.70 45.01 0.12 2.62 16 9 H 0.09 1.64 7.47 -2.39 -0.02 1.62 16 10 N -1.10 -20.88 5.36 -169.32 -0.91 -21.78 16 11 S 2.63 72.95 5.44 -56.49 -0.31 72.64 16 12 O -0.99 -33.84 18.08 -127.65 -2.31 -36.14 16 13 O -0.99 -33.65 17.38 -127.65 -2.22 -35.87 16 14 C -0.61 -17.44 5.25 71.98 0.38 -17.07 16 15 C -0.11 -4.23 5.16 30.60 0.16 -4.07 16 16 C 0.03 1.63 4.97 29.85 0.15 1.78 16 17 C -0.55 -31.10 9.11 25.60 0.23 -30.87 16 18 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 19 C 0.00 0.20 5.46 84.66 0.46 0.66 16 20 N -0.93 -55.06 13.29 21.45 0.28 -54.77 16 21 Si 0.96 43.90 29.54 68.60 2.03 45.92 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 25 C -0.10 -1.45 4.74 30.61 0.15 -1.31 16 26 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.09 0.66 7.14 -2.39 -0.02 0.64 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.70 6.92 -2.39 -0.02 0.68 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.13 5.82 -2.39 -0.01 1.12 16 35 H 0.43 6.35 8.80 -96.74 -0.85 5.50 16 36 H 0.15 3.62 6.79 -2.39 -0.02 3.61 16 37 H 0.15 3.70 8.14 -2.39 -0.02 3.68 16 38 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 41 H 0.00 0.18 8.14 -2.39 -0.02 0.17 16 42 H 0.26 14.73 8.31 -92.71 -0.77 13.95 16 43 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -73.56 372.20 -1.12 -74.68 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.12 Total: 14.18 kcal Atomic # 6 Polarization: -56.30 SS G_CDS: 3.42 Total: -52.89 kcal Atomic # 7 Polarization: -75.93 SS G_CDS: -0.62 Total: -76.55 kcal Atomic # 8 Polarization: -67.48 SS G_CDS: -4.53 Total: -72.01 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 68.20 SS G_CDS: -1.54 Total: 66.67 kcal Total: -73.56 -1.12 -74.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117374527.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.574 kcal (2) G-P(sol) polarization free energy of solvation -73.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds