Wall clock time and date at job start Sat Apr 11 2020 00:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00291 * 2 1 4 4 C 1.52992 * 109.47388 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47116 * 64.99850 * 4 3 2 6 6 C 1.46503 * 119.99864 * 270.00187 * 5 4 3 7 7 C 1.50702 * 109.47007 * 263.17292 * 6 5 4 8 8 H 1.08003 * 120.00056 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99854 * 180.02562 * 7 6 5 10 10 N 1.31505 * 120.00191 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99685 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47206 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.46807 * 119.99871 * 11 9 7 14 14 H 1.48496 * 109.47064 * 239.99547 * 11 9 7 15 15 C 1.34779 * 120.00344 * 90.00178 * 5 4 3 16 16 O 1.21652 * 119.99591 * 3.71641 * 15 5 4 17 17 C 1.46971 * 119.99915 * 183.71735 * 15 5 4 18 18 C 1.35818 * 125.12966 * 173.43768 * 17 15 5 19 19 C 1.46247 * 106.07958 * 179.97438 * 18 17 15 20 20 C 1.39740 * 134.13324 * 179.97438 * 19 18 17 21 21 C 1.37783 * 119.57685 * 180.02562 * 20 19 18 22 22 F 1.35101 * 119.87515 * 179.97438 * 21 20 19 23 23 C 1.39048 * 120.25091 * 359.71286 * 21 20 19 24 24 C 1.37755 * 120.72169 * 0.57194 * 23 21 20 25 25 C 1.39001 * 120.02558 * 359.44453 * 24 23 21 26 26 O 1.34794 * 133.11759 * 180.25461 * 25 24 23 27 27 H 1.08993 * 109.47474 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46764 * 300.00622 * 1 2 3 29 29 H 1.08998 * 109.47169 * 60.00218 * 1 2 3 30 30 H 1.09004 * 109.47020 * 59.99520 * 3 2 1 31 31 H 1.09003 * 109.46729 * 299.99981 * 3 2 1 32 32 H 1.09003 * 109.47147 * 305.00043 * 4 3 2 33 33 H 1.09005 * 109.47613 * 184.99604 * 4 3 2 34 34 H 1.09000 * 109.47455 * 23.16748 * 6 5 4 35 35 H 1.08999 * 109.47045 * 143.17441 * 6 5 4 36 36 H 0.96999 * 120.00405 * 179.97438 * 10 9 7 37 37 H 1.08004 * 126.95648 * 359.97438 * 18 17 15 38 38 H 1.08003 * 120.21063 * 0.05464 * 20 19 18 39 39 H 1.07997 * 119.63818 * 180.26798 * 23 21 20 40 40 H 1.08000 * 119.98255 * 179.72543 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1062 -0.8927 -1.3402 7 6 5.5422 -1.2846 -1.1048 8 1 6.2842 -0.5247 -0.9086 9 6 5.9089 -2.6133 -1.1408 10 7 5.0056 -3.5385 -1.3801 11 14 7.6890 -3.0990 -0.8496 12 1 8.5009 -1.8802 -0.6037 13 1 7.7708 -3.9945 0.3323 14 1 8.2103 -3.8088 -2.0453 15 6 4.2634 1.3328 -2.3201 16 8 4.2213 2.5449 -2.2263 17 6 4.6270 0.7067 -3.5991 18 6 4.8115 1.3704 -4.7696 19 6 5.1579 0.3533 -5.7617 20 6 5.4612 0.3877 -7.1254 21 6 5.7513 -0.7854 -7.7873 22 9 6.0449 -0.7592 -9.1058 23 6 5.7484 -1.9954 -7.1023 24 6 5.4454 -2.0431 -5.7594 25 6 5.1492 -0.8723 -5.0711 26 8 4.8283 -0.6142 -3.7877 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8508 0.5685 0.8427 33 1 3.9785 2.1765 0.0901 34 1 3.4736 -1.3607 -0.5860 35 1 3.7967 -1.2248 -2.3312 36 1 5.2636 -4.4732 -1.4058 37 1 4.7208 2.4340 -4.9342 38 1 5.4686 1.3278 -7.6569 39 1 5.9815 -2.9084 -7.6300 40 1 5.4423 -2.9901 -5.2401 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117990679.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:31:20 Heat of formation + Delta-G solvation = -84.517616 kcal Electronic energy + Delta-G solvation = -27354.644749 eV Core-core repulsion = 23244.310619 eV Total energy + Delta-G solvation = -4110.334130 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.121 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.77539 -42.09656 -39.20771 -37.52106 -37.22884 -35.14610 -32.64392 -32.50047 -30.41948 -29.79329 -28.93876 -27.10017 -26.06748 -24.37042 -22.99207 -22.48302 -22.17076 -21.06844 -19.36923 -17.76145 -17.24040 -16.82976 -16.58265 -16.19323 -15.93679 -15.82063 -15.38167 -15.27035 -15.16551 -14.69859 -14.48182 -14.12995 -13.84062 -13.55173 -13.21956 -12.99365 -12.78491 -12.53201 -12.34132 -12.10233 -11.89177 -11.61291 -11.60110 -11.31427 -10.96410 -10.92376 -10.80255 -10.50044 -10.16090 -10.00306 -9.79429 -9.64519 -9.40655 -8.49694 -8.26166 -8.13413 -7.78414 -6.11565 -4.16473 0.77581 1.35912 2.12964 2.96276 3.23440 3.32140 3.36464 3.64142 3.67584 3.71638 4.07581 4.27135 4.38481 4.67566 4.80398 5.06259 5.22535 5.26500 5.30856 5.33317 5.42756 5.47145 5.56448 5.57524 5.59292 5.79745 5.80753 5.91529 5.97991 6.12144 6.21110 6.22895 6.34246 6.54037 6.66670 6.76420 7.32130 7.38508 7.41748 7.56310 7.82175 8.10281 8.11209 8.60554 8.88725 9.48198 10.95750 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.010109 B = 0.005175 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.267384 B = 5409.845417 C = 7048.054694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.376 6.376 3 C 0.047 3.953 4 C 0.119 3.881 5 N -0.571 5.571 6 C 0.234 3.766 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.070 3.930 10 N -0.887 5.887 11 Si 0.888 3.112 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.588 3.412 16 O -0.553 6.553 17 C 0.022 3.978 18 C -0.153 4.153 19 C -0.118 4.118 20 C -0.106 4.106 21 C 0.071 3.929 22 F -0.143 7.143 23 C -0.130 4.130 24 C -0.067 4.067 25 C 0.057 3.943 26 O -0.119 6.119 27 H 0.084 0.916 28 H 0.035 0.965 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.262 0.738 37 H 0.165 0.835 38 H 0.137 0.863 39 H 0.144 0.856 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.518 5.239 -5.371 8.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.294 6.294 3 C -0.031 4.031 4 C -0.004 4.004 5 N -0.298 5.298 6 C 0.115 3.885 7 C -0.567 4.567 8 H 0.075 0.925 9 C -0.132 4.132 10 N -0.526 5.526 11 Si 0.716 3.284 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.208 1.208 15 C 0.375 3.625 16 O -0.436 6.436 17 C -0.030 4.030 18 C -0.174 4.174 19 C -0.120 4.120 20 C -0.125 4.125 21 C 0.052 3.948 22 F -0.122 7.122 23 C -0.149 4.149 24 C -0.086 4.086 25 C 0.008 3.992 26 O -0.017 6.017 27 H 0.102 0.898 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.183 0.817 38 H 0.155 0.845 39 H 0.161 0.839 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.479 5.236 -5.108 8.577 hybrid contribution 0.884 -0.185 -0.172 0.919 sum -3.594 5.051 -5.280 8.143 Atomic orbital electron populations 1.22690 0.81951 1.02520 0.99232 1.88056 1.18854 1.27286 1.95225 1.23020 0.94884 0.85132 1.00065 1.21477 0.91385 0.99975 0.87554 1.48225 1.61305 1.10671 1.09647 1.19811 0.97610 0.71625 0.99447 1.21424 0.93566 0.92412 1.49320 0.92463 1.24811 0.97230 0.96254 0.94948 1.69940 1.33037 1.00697 1.48885 0.86591 0.85206 0.78644 0.77952 1.19796 1.20896 1.20842 1.16831 0.78015 0.85670 0.81985 1.90769 1.56342 1.12752 1.83705 1.22133 1.03206 0.81695 0.95951 1.22467 1.05391 0.99668 0.89907 1.19632 1.05134 0.93284 0.93905 1.20323 1.01845 0.97624 0.92665 1.17288 1.05032 0.94354 0.78162 1.91472 1.91372 1.97353 1.31973 1.20838 1.03095 0.97180 0.93790 1.19909 0.99688 0.96594 0.92392 1.20003 1.00197 0.95147 0.83899 1.84948 1.69081 1.23432 1.24248 0.89775 0.94626 0.94583 0.92784 0.93285 0.88904 0.88895 0.92800 0.93068 0.92795 0.81740 0.84510 0.83872 0.83458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.38 -6.42 9.66 -35.23 -0.34 -6.76 16 3 C 0.05 0.72 6.28 37.15 0.23 0.95 16 4 C 0.12 2.08 5.81 -4.04 -0.02 2.06 16 5 N -0.57 -11.99 2.44 -176.49 -0.43 -12.42 16 6 C 0.23 5.62 4.52 -5.19 -0.02 5.59 16 7 C -0.53 -13.76 8.34 -34.44 -0.29 -14.05 16 8 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 9 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 10 N -0.89 -24.14 13.29 55.43 0.74 -23.40 16 11 Si 0.89 20.70 29.54 -169.99 -5.02 15.67 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 15 C 0.59 12.41 7.58 -12.72 -0.10 12.31 16 16 O -0.55 -11.85 16.39 5.23 0.09 -11.76 16 17 C 0.02 0.44 6.70 -36.91 -0.25 0.20 16 18 C -0.15 -2.69 10.81 -37.23 -0.40 -3.10 16 19 C -0.12 -2.01 6.38 -105.20 -0.67 -2.68 16 20 C -0.11 -1.53 10.08 -39.19 -0.40 -1.92 16 21 C 0.07 1.01 7.29 -39.45 -0.29 0.72 16 22 F -0.14 -1.96 17.26 2.25 0.04 -1.92 16 23 C -0.13 -1.80 9.99 -39.46 -0.39 -2.19 16 24 C -0.07 -1.10 10.06 -39.48 -0.40 -1.50 16 25 C 0.06 1.08 7.40 -38.38 -0.28 0.80 16 26 O -0.12 -2.58 6.39 2.59 0.02 -2.56 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.61 8.07 -51.93 -0.42 1.19 16 33 H 0.09 1.51 7.37 -51.93 -0.38 1.13 16 34 H 0.05 1.38 7.27 -51.93 -0.38 1.01 16 35 H 0.05 1.32 5.41 -51.93 -0.28 1.04 16 36 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 37 H 0.17 2.50 8.06 -52.48 -0.42 2.08 16 38 H 0.14 1.63 8.06 -52.48 -0.42 1.21 16 39 H 0.14 1.57 8.06 -52.49 -0.42 1.14 16 40 H 0.15 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 351.18 15.07 5.29 5.29 Total: -1.00 -29.54 351.18 -6.69 -36.23 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -4.81 Total: 1.16 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -2.26 Total: 0.47 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.31 Total: -35.82 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.24 Total: -21.09 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.54 -6.69 -36.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117990679.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.285 kcal (2) G-P(sol) polarization free energy of solvation -29.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds