Wall clock time and date at job start Sat Apr 11 2020 00:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00291 * 2 1 4 4 C 1.52992 * 109.47388 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47116 * 64.99850 * 4 3 2 6 6 C 1.46503 * 119.99864 * 270.00187 * 5 4 3 7 7 C 1.50702 * 109.47007 * 263.17292 * 6 5 4 8 8 H 1.08003 * 120.00056 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99854 * 180.02562 * 7 6 5 10 10 N 1.31505 * 120.00191 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99685 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47206 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.46807 * 119.99871 * 11 9 7 14 14 H 1.48496 * 109.47064 * 239.99547 * 11 9 7 15 15 C 1.34779 * 120.00344 * 90.00178 * 5 4 3 16 16 O 1.21652 * 119.99591 * 3.71641 * 15 5 4 17 17 C 1.46971 * 119.99915 * 183.71735 * 15 5 4 18 18 C 1.35818 * 125.12966 * 173.43768 * 17 15 5 19 19 C 1.46247 * 106.07958 * 179.97438 * 18 17 15 20 20 C 1.39740 * 134.13324 * 179.97438 * 19 18 17 21 21 C 1.37783 * 119.57685 * 180.02562 * 20 19 18 22 22 F 1.35101 * 119.87515 * 179.97438 * 21 20 19 23 23 C 1.39048 * 120.25091 * 359.71286 * 21 20 19 24 24 C 1.37755 * 120.72169 * 0.57194 * 23 21 20 25 25 C 1.39001 * 120.02558 * 359.44453 * 24 23 21 26 26 O 1.34794 * 133.11759 * 180.25461 * 25 24 23 27 27 H 1.08993 * 109.47474 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46764 * 300.00622 * 1 2 3 29 29 H 1.08998 * 109.47169 * 60.00218 * 1 2 3 30 30 H 1.09004 * 109.47020 * 59.99520 * 3 2 1 31 31 H 1.09003 * 109.46729 * 299.99981 * 3 2 1 32 32 H 1.09003 * 109.47147 * 305.00043 * 4 3 2 33 33 H 1.09005 * 109.47613 * 184.99604 * 4 3 2 34 34 H 1.09000 * 109.47455 * 23.16748 * 6 5 4 35 35 H 1.08999 * 109.47045 * 143.17441 * 6 5 4 36 36 H 0.96999 * 120.00405 * 179.97438 * 10 9 7 37 37 H 1.08004 * 126.95648 * 359.97438 * 18 17 15 38 38 H 1.08003 * 120.21063 * 0.05464 * 20 19 18 39 39 H 1.07997 * 119.63818 * 180.26798 * 23 21 20 40 40 H 1.08000 * 119.98255 * 179.72543 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1062 -0.8927 -1.3402 7 6 5.5422 -1.2846 -1.1048 8 1 6.2842 -0.5247 -0.9086 9 6 5.9089 -2.6133 -1.1408 10 7 5.0056 -3.5385 -1.3801 11 14 7.6890 -3.0990 -0.8496 12 1 8.5009 -1.8802 -0.6037 13 1 7.7708 -3.9945 0.3323 14 1 8.2103 -3.8088 -2.0453 15 6 4.2634 1.3328 -2.3201 16 8 4.2213 2.5449 -2.2263 17 6 4.6270 0.7067 -3.5991 18 6 4.8115 1.3704 -4.7696 19 6 5.1579 0.3533 -5.7617 20 6 5.4612 0.3877 -7.1254 21 6 5.7513 -0.7854 -7.7873 22 9 6.0449 -0.7592 -9.1058 23 6 5.7484 -1.9954 -7.1023 24 6 5.4454 -2.0431 -5.7594 25 6 5.1492 -0.8723 -5.0711 26 8 4.8283 -0.6142 -3.7877 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8508 0.5685 0.8427 33 1 3.9785 2.1765 0.0901 34 1 3.4736 -1.3607 -0.5860 35 1 3.7967 -1.2248 -2.3312 36 1 5.2636 -4.4732 -1.4058 37 1 4.7208 2.4340 -4.9342 38 1 5.4686 1.3278 -7.6569 39 1 5.9815 -2.9084 -7.6300 40 1 5.4423 -2.9901 -5.2401 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117990679.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:31:20 Heat of formation + Delta-G solvation = -100.922870 kcal Electronic energy + Delta-G solvation = -27355.356134 eV Core-core repulsion = 23244.310619 eV Total energy + Delta-G solvation = -4111.045515 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.121 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.89536 -43.49938 -40.76437 -38.77131 -38.53054 -36.79435 -34.58650 -33.85427 -31.84082 -31.05593 -30.31483 -28.89555 -27.22682 -25.75710 -24.84133 -23.77522 -23.47904 -22.43894 -20.85548 -19.16475 -18.80475 -18.36316 -18.03915 -17.62403 -17.33162 -17.17530 -16.71802 -16.60315 -16.43017 -16.28110 -15.98985 -15.42346 -15.24897 -14.97439 -14.41473 -14.35324 -14.29483 -14.11494 -13.85693 -13.51728 -13.30086 -13.02027 -12.86410 -12.82008 -12.75839 -12.52911 -12.18816 -12.01874 -11.88018 -11.67739 -11.34229 -11.30333 -10.61273 -10.51018 -9.71309 -9.49660 -9.27599 -8.13970 -6.25316 -0.54113 0.10581 0.74254 1.37459 1.40658 1.50136 1.57968 2.10107 2.17020 2.43628 2.45529 2.92496 3.01544 3.17272 3.37763 3.53653 3.85243 3.91421 4.08621 4.11350 4.18767 4.27744 4.37695 4.48518 4.52121 4.54777 4.58670 4.76477 4.83263 4.84801 4.85426 4.97973 5.00050 5.05889 5.25766 5.40262 5.54473 5.67490 5.79128 6.07393 6.10879 6.26410 6.39883 6.81803 7.03032 7.42366 8.92871 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.010109 B = 0.005175 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.267384 B = 5409.845417 C = 7048.054694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.412 6.412 3 C 0.054 3.946 4 C 0.112 3.888 5 N -0.577 5.577 6 C 0.258 3.742 7 C -0.533 4.533 8 H 0.043 0.957 9 C 0.031 3.969 10 N -0.912 5.912 11 Si 0.944 3.056 12 H -0.276 1.276 13 H -0.276 1.276 14 H -0.276 1.276 15 C 0.586 3.414 16 O -0.563 6.563 17 C -0.024 4.024 18 C -0.126 4.126 19 C -0.129 4.129 20 C -0.093 4.093 21 C 0.073 3.927 22 F -0.135 7.135 23 C -0.106 4.106 24 C -0.088 4.088 25 C 0.030 3.970 26 O -0.152 6.152 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.042 0.958 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.031 0.969 35 H 0.034 0.966 36 H 0.265 0.735 37 H 0.189 0.811 38 H 0.168 0.832 39 H 0.177 0.823 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.033 5.805 -6.887 9.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C -0.023 4.023 4 C -0.010 4.010 5 N -0.305 5.305 6 C 0.138 3.862 7 C -0.572 4.572 8 H 0.062 0.938 9 C -0.169 4.169 10 N -0.552 5.552 11 Si 0.770 3.230 12 H -0.201 1.201 13 H -0.202 1.202 14 H -0.201 1.201 15 C 0.374 3.626 16 O -0.446 6.446 17 C -0.074 4.074 18 C -0.146 4.146 19 C -0.130 4.130 20 C -0.112 4.112 21 C 0.054 3.946 22 F -0.114 7.114 23 C -0.125 4.125 24 C -0.106 4.106 25 C -0.019 4.019 26 O -0.052 6.052 27 H 0.106 0.894 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.122 0.878 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.206 0.794 38 H 0.185 0.815 39 H 0.194 0.806 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.006 5.819 -6.619 9.681 hybrid contribution 0.726 -0.367 0.146 0.827 sum -3.279 5.452 -6.473 9.076 Atomic orbital electron populations 1.22873 0.79869 1.03343 1.00726 1.88005 1.21285 1.28363 1.95519 1.22966 0.93096 0.84862 1.01418 1.21712 0.93328 1.00025 0.85972 1.48187 1.61750 1.09544 1.11000 1.19271 0.96001 0.73389 0.97570 1.21514 0.94198 0.92327 1.49138 0.93833 1.25436 1.00552 0.96223 0.94737 1.70025 1.34609 1.00992 1.49541 0.85733 0.81073 0.78125 0.78118 1.20118 1.20202 1.20146 1.16970 0.77670 0.85662 0.82331 1.90734 1.57064 1.12759 1.84079 1.22156 1.06677 0.81968 0.96639 1.22801 1.02233 1.00641 0.88957 1.19722 1.06215 0.92214 0.94852 1.20608 0.99855 0.99201 0.91489 1.17317 1.04529 0.94320 0.78445 1.91504 1.91215 1.97306 1.31327 1.21160 1.00148 0.98575 0.92568 1.20040 1.01270 0.95838 0.93450 1.20529 1.01083 0.96922 0.83414 1.84837 1.70302 1.24116 1.25976 0.89416 0.92120 0.93984 0.89213 0.93859 0.89429 0.87781 0.95055 0.94823 0.92538 0.79392 0.81469 0.80573 0.83946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.94 16 2 O -0.41 -14.25 9.66 -148.98 -1.44 -15.69 16 3 C 0.05 1.64 6.28 71.98 0.45 2.09 16 4 C 0.11 3.98 5.81 86.38 0.50 4.48 16 5 N -0.58 -25.18 2.44 -830.54 -2.03 -27.20 16 6 C 0.26 13.00 4.52 85.63 0.39 13.39 16 7 C -0.53 -28.75 8.34 25.60 0.21 -28.54 16 8 H 0.04 2.42 7.81 -2.91 -0.02 2.40 16 9 C 0.03 1.67 5.46 84.66 0.46 2.13 16 10 N -0.91 -50.83 13.29 21.45 0.28 -50.55 16 11 Si 0.94 42.90 29.54 68.60 2.03 44.93 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 13 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 14 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 15 C 0.59 25.41 7.58 86.53 0.66 26.07 16 16 O -0.56 -24.30 16.39 -4.20 -0.07 -24.36 16 17 C -0.02 -1.00 6.70 24.00 0.16 -0.84 16 18 C -0.13 -4.34 10.81 23.79 0.26 -4.09 16 19 C -0.13 -4.24 6.38 -20.24 -0.13 -4.37 16 20 C -0.09 -2.42 10.08 22.53 0.23 -2.19 16 21 C 0.07 1.84 7.29 22.36 0.16 2.00 16 22 F -0.13 -3.19 17.26 44.97 0.78 -2.41 16 23 C -0.11 -2.66 9.99 22.35 0.22 -2.44 16 24 C -0.09 -2.82 10.06 22.34 0.22 -2.60 16 25 C 0.03 1.13 7.40 23.05 0.17 1.30 16 26 O -0.15 -6.90 6.39 -13.66 -0.09 -6.98 16 27 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.34 16 32 H 0.09 3.15 8.07 -2.39 -0.02 3.13 16 33 H 0.10 3.41 7.37 -2.38 -0.02 3.39 16 34 H 0.03 1.70 7.27 -2.39 -0.02 1.69 16 35 H 0.03 1.85 5.41 -2.39 -0.01 1.84 16 36 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 37 H 0.19 5.38 8.06 -2.91 -0.02 5.36 16 38 H 0.17 3.30 8.06 -2.91 -0.02 3.27 16 39 H 0.18 3.20 8.06 -2.91 -0.02 3.18 16 40 H 0.14 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -64.96 351.18 5.75 -59.21 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 1.07 Total: 14.71 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 5.22 Total: 8.35 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -1.74 Total: -77.75 kcal Atomic # 8 Polarization: -45.45 SS G_CDS: -1.60 Total: -47.04 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.78 Total: -2.41 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -64.96 5.75 -59.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117990679.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.716 kcal (2) G-P(sol) polarization free energy of solvation -64.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds