Wall clock time and date at job start Sat Apr 11 2020 00:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34233 * 116.99959 * 2 1 4 4 O 1.20827 * 119.99572 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99985 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47335 * 179.97438 * 5 3 2 7 7 C 1.37102 * 119.99699 * 97.86740 * 6 5 3 8 8 H 1.08003 * 119.99402 * 157.38646 * 7 6 5 9 9 C 1.38943 * 120.00359 * 337.38369 * 7 6 5 10 10 N 1.31414 * 119.99990 * 349.83769 * 9 7 6 11 11 Si 1.86798 * 120.00045 * 169.83707 * 9 7 6 12 12 H 1.48499 * 109.47034 * 60.00143 * 11 9 7 13 13 H 1.48501 * 109.46971 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47326 * 299.99859 * 11 9 7 15 15 C 1.34771 * 120.00075 * 277.87226 * 6 5 3 16 16 O 1.21292 * 119.99866 * 359.97438 * 15 6 5 17 17 C 1.50708 * 120.00211 * 179.97438 * 15 6 5 18 18 H 1.08997 * 115.54274 * 325.58351 * 17 15 6 19 19 C 1.52993 * 117.49807 * 111.24711 * 17 15 6 20 20 C 1.52992 * 117.49875 * 179.91041 * 17 15 6 21 21 H 1.09007 * 117.50209 * 359.97438 * 20 17 15 22 22 C 1.50703 * 117.49724 * 144.99701 * 20 17 15 23 23 C 1.38249 * 119.97164 * 59.72832 * 22 20 17 24 24 C 1.38204 * 120.01981 * 179.72450 * 23 22 20 25 25 C 1.38453 * 119.97232 * 0.57104 * 24 23 22 26 26 F 1.35104 * 120.01951 * 179.68390 * 25 24 23 27 27 C 1.38457 * 119.95456 * 359.70145 * 25 24 23 28 28 C 1.38195 * 119.97306 * 0.02562 * 27 25 24 29 29 H 1.08995 * 109.46940 * 300.00314 * 1 2 3 30 30 H 1.09008 * 109.46715 * 60.00098 * 1 2 3 31 31 H 1.08996 * 109.46813 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47108 * 300.00201 * 5 3 2 33 33 H 1.09001 * 109.47295 * 59.99636 * 5 3 2 34 34 H 0.97000 * 120.00372 * 179.97438 * 10 9 7 35 35 H 1.08996 * 117.50343 * 214.98050 * 19 17 15 36 36 H 1.09004 * 117.50258 * 0.02562 * 19 17 15 37 37 H 1.07996 * 119.98436 * 359.97438 * 23 22 20 38 38 H 1.07995 * 120.00628 * 180.29183 * 24 23 22 39 39 H 1.08000 * 120.01493 * 180.02562 * 27 25 24 40 40 H 1.07998 * 119.99121 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.3324 3.2913 1.1748 8 1 4.9674 4.1648 1.1607 9 6 3.8709 2.7873 2.3846 10 7 2.9448 1.8550 2.3976 11 14 4.5669 3.4348 3.9926 12 1 4.3107 4.8942 4.0908 13 1 3.9136 2.7393 5.1305 14 1 6.0302 3.1852 4.0348 15 6 4.0191 3.3710 -1.1574 16 8 3.7092 2.8298 -2.1977 17 6 4.4459 4.8164 -1.1579 18 1 4.1576 5.3918 -0.2782 19 6 5.7829 5.1579 -1.8186 20 6 4.4695 5.5456 -2.5027 21 1 4.1767 4.9798 -3.3872 22 6 4.0924 7.0046 -2.5097 23 6 4.8202 7.9097 -1.7598 24 6 4.4787 9.2489 -1.7700 25 6 3.4002 9.6820 -2.5224 26 9 3.0617 10.9899 -2.5281 27 6 2.6686 8.7737 -3.2687 28 6 3.0153 7.4360 -3.2614 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 3.9564 0.7806 0.8891 33 1 3.9557 0.7809 -0.8908 34 1 2.6228 1.5029 3.2421 35 1 6.3741 5.9585 -1.3740 36 1 6.3537 4.3374 -2.2533 37 1 5.6582 7.5707 -1.1689 38 1 5.0503 9.9564 -1.1878 39 1 1.8274 9.1106 -3.8563 40 1 2.4451 6.7274 -3.8437 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120519473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:31:27 Heat of formation + Delta-G solvation = -101.493763 kcal Electronic energy + Delta-G solvation = -26810.963527 eV Core-core repulsion = 22699.893256 eV Total energy + Delta-G solvation = -4111.070271 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.121 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.86702 -39.83070 -39.27219 -38.30571 -36.10668 -35.12944 -34.58872 -31.58879 -31.12762 -30.10852 -28.61167 -26.41434 -25.02092 -23.71893 -23.17144 -22.50017 -20.51311 -19.98365 -19.13946 -17.75103 -17.25397 -16.62332 -16.54414 -16.08061 -15.56321 -15.51526 -15.45666 -15.12663 -14.62473 -14.47311 -14.27909 -13.61270 -13.54963 -13.36690 -13.01887 -12.66694 -12.53501 -12.46925 -12.15329 -11.91757 -11.43766 -11.35770 -11.31226 -11.27601 -10.92561 -10.81504 -10.61018 -10.51723 -10.20306 -9.96148 -9.82856 -9.60039 -9.08789 -9.04757 -8.69674 -8.27702 -7.96686 -6.51496 -4.09645 1.15048 1.26160 3.04734 3.14519 3.16182 3.32008 3.59435 3.69387 3.86266 4.03919 4.27632 4.43983 4.47670 4.76296 4.86981 4.89335 5.03727 5.26031 5.30041 5.36460 5.51152 5.61185 5.69410 5.77382 5.89471 5.93922 5.99074 6.06824 6.10844 6.15376 6.21885 6.29088 6.40731 6.42600 6.55387 6.70747 6.73916 6.92218 7.28119 7.45499 7.59090 8.20263 8.93413 9.09602 9.31396 9.71409 10.55211 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.012631 B = 0.003805 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.231897 B = 7356.796926 C = 8335.272326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.375 6.375 3 C 0.487 3.513 4 O -0.503 6.503 5 C 0.158 3.842 6 N -0.425 5.425 7 C -0.329 4.329 8 H 0.103 0.897 9 C 0.037 3.963 10 N -0.879 5.879 11 Si 0.930 3.070 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.272 1.272 15 C 0.499 3.501 16 O -0.600 6.600 17 C -0.131 4.131 18 H 0.124 0.876 19 C -0.152 4.152 20 C -0.104 4.104 21 H 0.124 0.876 22 C -0.046 4.046 23 C -0.093 4.093 24 C -0.150 4.150 25 C 0.083 3.917 26 F -0.146 7.146 27 C -0.151 4.151 28 C -0.083 4.083 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.129 0.871 33 H 0.078 0.922 34 H 0.274 0.726 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.728 5.826 -5.024 8.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.293 6.293 3 C 0.328 3.672 4 O -0.387 6.387 5 C 0.033 3.967 6 N -0.143 5.143 7 C -0.457 4.457 8 H 0.121 0.879 9 C -0.167 4.167 10 N -0.517 5.517 11 Si 0.757 3.243 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.197 1.197 15 C 0.288 3.712 16 O -0.486 6.486 17 C -0.152 4.152 18 H 0.142 0.858 19 C -0.189 4.189 20 C -0.122 4.122 21 H 0.142 0.858 22 C -0.046 4.046 23 C -0.111 4.111 24 C -0.169 4.169 25 C 0.064 3.936 26 F -0.124 7.124 27 C -0.170 4.170 28 C -0.101 4.101 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.147 0.853 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.216 5.784 -5.344 8.181 hybrid contribution -0.296 0.634 1.222 1.408 sum 1.919 6.418 -4.122 7.865 Atomic orbital electron populations 1.22930 0.78765 1.01798 1.01605 1.86458 1.21628 1.35506 1.85696 1.23950 0.92314 0.80515 0.70429 1.90515 1.66540 1.36411 1.45270 1.20499 0.87144 0.85515 1.03587 1.43234 1.56605 1.07909 1.06515 1.19618 1.29644 1.13940 0.82464 0.87927 1.25303 0.94777 0.96702 0.99931 1.69707 1.25899 1.28229 1.27886 0.85933 0.78924 0.79035 0.80425 1.19799 1.20850 1.19698 1.19240 0.81558 0.86533 0.83826 1.90532 1.54864 1.70645 1.32572 1.22159 1.01208 0.95586 0.96263 0.85810 1.23041 0.89910 1.03026 1.02929 1.21067 1.01857 0.91215 0.98082 0.85813 1.19322 0.95050 0.94011 0.96251 1.20988 0.99895 0.91716 0.98470 1.21082 0.97657 0.97061 1.01100 1.17704 0.97228 0.78006 1.00706 1.91473 1.91985 1.33522 1.95459 1.21096 1.01184 0.93337 1.01355 1.20900 0.96069 0.94625 0.98509 0.92673 0.93164 0.89598 0.85309 0.90449 0.91563 0.88274 0.88150 0.84668 0.84920 0.84915 0.84791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.56 101.05 1.07 1.83 16 2 O -0.38 -8.13 10.57 -39.27 -0.41 -8.54 16 3 C 0.49 12.07 6.12 36.00 0.22 12.29 16 4 O -0.50 -14.00 15.75 -18.75 -0.30 -14.30 16 5 C 0.16 3.75 5.10 -5.20 -0.03 3.73 16 6 N -0.42 -10.43 2.20 -116.10 -0.26 -10.68 16 7 C -0.33 -7.97 8.91 -14.93 -0.13 -8.10 16 8 H 0.10 2.30 6.57 -52.48 -0.34 1.96 16 9 C 0.04 0.90 5.10 -17.47 -0.09 0.81 16 10 N -0.88 -22.34 9.00 55.50 0.50 -21.84 16 11 Si 0.93 18.88 29.56 -169.99 -5.03 13.85 16 12 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 13 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 14 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 15 C 0.50 11.82 7.11 -10.98 -0.08 11.75 16 16 O -0.60 -15.39 15.97 5.55 0.09 -15.30 16 17 C -0.13 -2.52 4.58 -91.78 -0.42 -2.94 16 18 H 0.12 2.43 7.20 -51.93 -0.37 2.05 16 19 C -0.15 -2.28 9.56 -26.70 -0.26 -2.54 16 20 C -0.10 -1.68 5.56 -91.74 -0.51 -2.19 16 21 H 0.12 2.13 7.67 -51.92 -0.40 1.74 16 22 C -0.05 -0.66 5.61 -104.61 -0.59 -1.25 16 23 C -0.09 -1.20 9.29 -39.59 -0.37 -1.56 16 24 C -0.15 -1.85 10.03 -39.51 -0.40 -2.24 16 25 C 0.08 1.08 7.30 -39.42 -0.29 0.79 16 26 F -0.15 -1.93 17.27 2.25 0.04 -1.89 16 27 C -0.15 -1.90 10.03 -39.52 -0.40 -2.30 16 28 C -0.08 -1.12 9.73 -39.59 -0.39 -1.51 16 29 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 30 H 0.05 0.86 8.13 -51.92 -0.42 0.44 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.13 3.04 6.32 -51.93 -0.33 2.71 16 33 H 0.08 1.71 7.67 -51.93 -0.40 1.32 16 34 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 35 H 0.10 1.22 6.18 -51.93 -0.32 0.90 16 36 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.14 1.52 6.03 -52.49 -0.32 1.20 16 38 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 40 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 348.90 15.07 5.26 5.26 Total: -1.00 -30.86 348.90 -7.33 -38.18 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -4.57 Total: 8.69 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -2.65 Total: 6.56 kcal Atomic # 7 Polarization: -32.76 SS G_CDS: 0.24 Total: -32.52 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -0.62 Total: -38.14 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.86 -7.33 -38.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120519473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.309 kcal (2) G-P(sol) polarization free energy of solvation -30.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds