Wall clock time and date at job start Sat Apr 11 2020 00:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34233 * 116.99959 * 2 1 4 4 O 1.20827 * 119.99572 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99985 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47335 * 179.97438 * 5 3 2 7 7 C 1.37102 * 119.99699 * 97.86740 * 6 5 3 8 8 H 1.08003 * 119.99402 * 157.38646 * 7 6 5 9 9 C 1.38943 * 120.00359 * 337.38369 * 7 6 5 10 10 N 1.31414 * 119.99990 * 349.83769 * 9 7 6 11 11 Si 1.86798 * 120.00045 * 169.83707 * 9 7 6 12 12 H 1.48499 * 109.47034 * 60.00143 * 11 9 7 13 13 H 1.48501 * 109.46971 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47326 * 299.99859 * 11 9 7 15 15 C 1.34771 * 120.00075 * 277.87226 * 6 5 3 16 16 O 1.21292 * 119.99866 * 359.97438 * 15 6 5 17 17 C 1.50708 * 120.00211 * 179.97438 * 15 6 5 18 18 H 1.08997 * 115.54274 * 325.58351 * 17 15 6 19 19 C 1.52993 * 117.49807 * 111.24711 * 17 15 6 20 20 C 1.52992 * 117.49875 * 179.91041 * 17 15 6 21 21 H 1.09007 * 117.50209 * 359.97438 * 20 17 15 22 22 C 1.50703 * 117.49724 * 144.99701 * 20 17 15 23 23 C 1.38249 * 119.97164 * 59.72832 * 22 20 17 24 24 C 1.38204 * 120.01981 * 179.72450 * 23 22 20 25 25 C 1.38453 * 119.97232 * 0.57104 * 24 23 22 26 26 F 1.35104 * 120.01951 * 179.68390 * 25 24 23 27 27 C 1.38457 * 119.95456 * 359.70145 * 25 24 23 28 28 C 1.38195 * 119.97306 * 0.02562 * 27 25 24 29 29 H 1.08995 * 109.46940 * 300.00314 * 1 2 3 30 30 H 1.09008 * 109.46715 * 60.00098 * 1 2 3 31 31 H 1.08996 * 109.46813 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47108 * 300.00201 * 5 3 2 33 33 H 1.09001 * 109.47295 * 59.99636 * 5 3 2 34 34 H 0.97000 * 120.00372 * 179.97438 * 10 9 7 35 35 H 1.08996 * 117.50343 * 214.98050 * 19 17 15 36 36 H 1.09004 * 117.50258 * 0.02562 * 19 17 15 37 37 H 1.07996 * 119.98436 * 359.97438 * 23 22 20 38 38 H 1.07995 * 120.00628 * 180.29183 * 24 23 22 39 39 H 1.08000 * 120.01493 * 180.02562 * 27 25 24 40 40 H 1.07998 * 119.99121 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.3324 3.2913 1.1748 8 1 4.9674 4.1648 1.1607 9 6 3.8709 2.7873 2.3846 10 7 2.9448 1.8550 2.3976 11 14 4.5669 3.4348 3.9926 12 1 4.3107 4.8942 4.0908 13 1 3.9136 2.7393 5.1305 14 1 6.0302 3.1852 4.0348 15 6 4.0191 3.3710 -1.1574 16 8 3.7092 2.8298 -2.1977 17 6 4.4459 4.8164 -1.1579 18 1 4.1576 5.3918 -0.2782 19 6 5.7829 5.1579 -1.8186 20 6 4.4695 5.5456 -2.5027 21 1 4.1767 4.9798 -3.3872 22 6 4.0924 7.0046 -2.5097 23 6 4.8202 7.9097 -1.7598 24 6 4.4787 9.2489 -1.7700 25 6 3.4002 9.6820 -2.5224 26 9 3.0617 10.9899 -2.5281 27 6 2.6686 8.7737 -3.2687 28 6 3.0153 7.4360 -3.2614 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 3.9564 0.7806 0.8891 33 1 3.9557 0.7809 -0.8908 34 1 2.6228 1.5029 3.2421 35 1 6.3741 5.9585 -1.3740 36 1 6.3537 4.3374 -2.2533 37 1 5.6582 7.5707 -1.1689 38 1 5.0503 9.9564 -1.1878 39 1 1.8274 9.1106 -3.8563 40 1 2.4451 6.7274 -3.8437 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120519473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:31:27 Heat of formation + Delta-G solvation = -116.982652 kcal Electronic energy + Delta-G solvation = -26811.635176 eV Core-core repulsion = 22699.893256 eV Total energy + Delta-G solvation = -4111.741920 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.121 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.87935 -41.46278 -40.78194 -39.83181 -37.63078 -36.85120 -36.45259 -33.45161 -32.10727 -31.27419 -30.31247 -27.98852 -26.82831 -24.85663 -24.56114 -23.66322 -22.03575 -21.42817 -20.90617 -18.91753 -18.77246 -18.43760 -18.23812 -17.31057 -17.21495 -17.00013 -16.62325 -16.57541 -16.22532 -16.00065 -15.62729 -15.20117 -14.92186 -14.48690 -14.31359 -14.20704 -14.12507 -13.72047 -13.51334 -13.43962 -13.07100 -12.99291 -12.87275 -12.56592 -12.46139 -12.40974 -12.13251 -11.92666 -11.59465 -11.55197 -11.40821 -11.32707 -10.93240 -10.50236 -10.05581 -9.84734 -9.38879 -8.34142 -5.98212 0.10460 0.28685 1.42603 1.49989 1.59600 1.66689 1.77873 2.18372 2.33142 2.50048 2.84437 3.06020 3.22148 3.29766 3.68393 3.78836 3.92104 3.99310 4.05344 4.21399 4.26027 4.33059 4.33556 4.39292 4.48676 4.53727 4.59015 4.69213 4.75857 4.84095 4.99759 5.02473 5.12576 5.16257 5.20318 5.32795 5.43840 5.62200 5.63496 5.75780 5.92939 6.34972 7.08164 7.20174 7.48523 7.88491 8.72322 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.012631 B = 0.003805 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.231897 B = 7356.796926 C = 8335.272326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.376 6.376 3 C 0.488 3.512 4 O -0.542 6.542 5 C 0.155 3.845 6 N -0.438 5.438 7 C -0.342 4.342 8 H 0.118 0.882 9 C -0.007 4.007 10 N -0.907 5.907 11 Si 0.998 3.002 12 H -0.270 1.270 13 H -0.290 1.290 14 H -0.257 1.257 15 C 0.487 3.513 16 O -0.631 6.631 17 C -0.159 4.159 18 H 0.119 0.881 19 C -0.121 4.121 20 C -0.092 4.092 21 H 0.106 0.894 22 C -0.063 4.063 23 C -0.091 4.091 24 C -0.147 4.147 25 C 0.073 3.927 26 F -0.147 7.147 27 C -0.152 4.152 28 C -0.094 4.094 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.135 0.865 32 H 0.127 0.873 33 H 0.085 0.915 34 H 0.271 0.729 35 H 0.136 0.864 36 H 0.100 0.900 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.151 0.849 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.943 7.177 -4.430 9.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.293 6.293 3 C 0.331 3.669 4 O -0.430 6.430 5 C 0.029 3.971 6 N -0.155 5.155 7 C -0.469 4.469 8 H 0.136 0.864 9 C -0.208 4.208 10 N -0.547 5.547 11 Si 0.822 3.178 12 H -0.195 1.195 13 H -0.216 1.216 14 H -0.182 1.182 15 C 0.278 3.722 16 O -0.519 6.519 17 C -0.180 4.180 18 H 0.137 0.863 19 C -0.158 4.158 20 C -0.111 4.111 21 H 0.124 0.876 22 C -0.063 4.063 23 C -0.109 4.109 24 C -0.166 4.166 25 C 0.054 3.946 26 F -0.126 7.126 27 C -0.171 4.171 28 C -0.112 4.112 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.153 0.847 32 H 0.145 0.855 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.154 0.846 36 H 0.118 0.882 37 H 0.173 0.827 38 H 0.175 0.825 39 H 0.168 0.832 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.444 7.122 -4.759 9.232 hybrid contribution -0.770 0.172 0.964 1.246 sum 2.675 7.294 -3.795 8.646 Atomic orbital electron populations 1.23293 0.76259 1.04890 1.01120 1.86427 1.24068 1.33820 1.85013 1.24126 0.92729 0.80702 0.69317 1.90479 1.67431 1.37777 1.47319 1.20551 0.86902 0.85959 1.03699 1.43492 1.56719 1.08188 1.07097 1.20044 1.29875 1.14475 0.82530 0.86438 1.26186 0.94826 0.96837 1.02940 1.69833 1.27104 1.29497 1.28224 0.84899 0.78766 0.78169 0.75981 1.19527 1.21557 1.18152 1.20042 0.80803 0.88250 0.83124 1.90489 1.56152 1.71852 1.33456 1.22001 1.05321 0.92810 0.97893 0.86341 1.23208 0.88746 1.03432 1.00437 1.20979 1.02484 0.91936 0.95687 0.87550 1.19302 0.96146 0.93122 0.97738 1.21178 1.00080 0.91640 0.97967 1.21352 0.97324 0.97263 1.00660 1.17919 0.97661 0.77989 1.00988 1.91470 1.92045 1.33617 1.95485 1.21274 1.01619 0.92836 1.01322 1.21022 0.96171 0.95259 0.98795 0.93676 0.93185 0.84697 0.85524 0.89678 0.91952 0.84629 0.88181 0.82723 0.82472 0.83152 0.84660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.30 10.56 113.37 1.20 2.50 16 2 O -0.38 -16.41 10.57 -51.45 -0.54 -16.96 16 3 C 0.49 24.83 6.12 71.23 0.44 25.27 16 4 O -0.54 -31.13 15.75 21.96 0.35 -30.79 16 5 C 0.15 7.54 5.10 85.63 0.44 7.97 16 6 N -0.44 -21.87 2.20 -639.61 -1.41 -23.28 16 7 C -0.34 -16.57 8.91 84.04 0.75 -15.82 16 8 H 0.12 5.17 6.57 -2.91 -0.02 5.15 16 9 C -0.01 -0.35 5.10 84.92 0.43 0.08 16 10 N -0.91 -46.77 9.00 21.66 0.19 -46.58 16 11 Si 1.00 38.15 29.56 68.60 2.03 40.18 16 12 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 13 H -0.29 -11.29 7.11 99.48 0.71 -10.58 16 14 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 15 C 0.49 23.53 7.11 87.66 0.62 24.15 16 16 O -0.63 -33.38 15.97 -3.07 -0.05 -33.42 16 17 C -0.16 -6.07 4.58 -11.54 -0.05 -6.12 16 18 H 0.12 4.60 7.20 -2.39 -0.02 4.58 16 19 C -0.12 -3.41 9.56 30.62 0.29 -3.12 16 20 C -0.09 -2.94 5.56 -11.52 -0.06 -3.00 16 21 H 0.11 3.74 7.67 -2.38 -0.02 3.73 16 22 C -0.06 -1.73 5.61 -19.86 -0.11 -1.84 16 23 C -0.09 -2.10 9.29 22.26 0.21 -1.89 16 24 C -0.15 -3.20 10.03 22.31 0.22 -2.98 16 25 C 0.07 1.77 7.30 22.37 0.16 1.93 16 26 F -0.15 -3.62 17.27 44.97 0.78 -2.84 16 27 C -0.15 -3.60 10.03 22.31 0.22 -3.38 16 28 C -0.09 -2.49 9.73 22.26 0.22 -2.27 16 29 H 0.04 1.63 8.13 -2.39 -0.02 1.61 16 30 H 0.05 1.71 8.13 -2.38 -0.02 1.69 16 31 H 0.13 3.26 8.14 -2.39 -0.02 3.24 16 32 H 0.13 6.15 6.32 -2.39 -0.02 6.13 16 33 H 0.09 3.90 7.67 -2.39 -0.02 3.88 16 34 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 35 H 0.14 2.80 6.18 -2.39 -0.01 2.79 16 36 H 0.10 2.85 8.14 -2.38 -0.02 2.83 16 37 H 0.16 2.88 6.03 -2.91 -0.02 2.86 16 38 H 0.16 2.60 8.06 -2.91 -0.02 2.57 16 39 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 40 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -68.02 348.90 7.40 -60.62 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: 1.08 Total: 31.58 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: 4.97 Total: 21.49 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: -1.22 Total: -69.86 kcal Atomic # 8 Polarization: -80.92 SS G_CDS: -0.25 Total: -81.17 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.78 Total: -2.84 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -68.02 7.40 -60.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120519473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.361 kcal (2) G-P(sol) polarization free energy of solvation -68.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds