Wall clock time and date at job start Sat Apr 11 2020 00:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34228 * 117.00458 * 2 1 4 4 O 1.20828 * 119.99575 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00230 * 179.97438 * 3 2 1 6 6 N 1.46505 * 109.46951 * 180.02562 * 5 3 2 7 7 C 1.37102 * 119.99821 * 90.00295 * 6 5 3 8 8 H 1.08001 * 119.99484 * 164.85333 * 7 6 5 9 9 C 1.38950 * 120.00067 * 344.85576 * 7 6 5 10 10 N 1.31414 * 119.99882 * 9.40319 * 9 7 6 11 11 Si 1.86801 * 119.99814 * 189.40643 * 9 7 6 12 12 H 1.48503 * 109.47195 * 60.00014 * 11 9 7 13 13 H 1.48505 * 109.46848 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47075 * 299.99476 * 11 9 7 15 15 C 1.34777 * 120.00002 * 269.73077 * 6 5 3 16 16 O 1.21289 * 120.00238 * 5.22868 * 15 6 5 17 17 C 1.50699 * 119.99885 * 185.23965 * 15 6 5 18 18 H 1.08999 * 115.54628 * 293.29767 * 17 15 6 19 19 C 1.52999 * 117.50242 * 78.96823 * 17 15 6 20 20 C 1.52997 * 60.00127 * 107.49177 * 19 17 15 21 21 H 1.08997 * 117.50156 * 107.49348 * 20 19 17 22 22 C 1.50710 * 117.49832 * 252.51409 * 20 19 17 23 23 C 1.38248 * 119.97013 * 8.34288 * 22 20 19 24 24 C 1.38195 * 120.02133 * 179.77006 * 23 22 20 25 25 C 1.38457 * 119.97533 * 0.50723 * 24 23 22 26 26 F 1.35103 * 120.02826 * 179.76908 * 25 24 23 27 27 C 1.38464 * 119.95128 * 359.74775 * 25 24 23 28 28 C 1.38198 * 119.96920 * 359.97438 * 27 25 24 29 29 H 1.09002 * 109.47455 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47507 * 299.99970 * 1 2 3 31 31 H 1.08999 * 109.47234 * 60.00127 * 1 2 3 32 32 H 1.08997 * 109.46795 * 60.00430 * 5 3 2 33 33 H 1.08997 * 109.47182 * 299.99959 * 5 3 2 34 34 H 0.96994 * 119.99773 * 174.97121 * 10 9 7 35 35 H 1.09002 * 117.49842 * 214.97777 * 19 17 15 36 36 H 1.09000 * 117.49705 * 359.97438 * 19 17 15 37 37 H 1.08000 * 119.99072 * 0.02562 * 23 22 20 38 38 H 1.08003 * 120.01291 * 180.25450 * 24 23 22 39 39 H 1.07995 * 120.01889 * 179.97438 * 27 25 24 40 40 H 1.07999 * 119.98489 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.1757 3.3367 1.1887 8 1 4.7083 4.2761 1.2053 9 6 3.6871 2.7940 2.3708 10 7 3.2049 1.5716 2.3826 11 14 3.7157 3.8021 3.9432 12 1 2.9106 5.0356 3.7551 13 1 3.1419 3.0017 5.0547 14 1 5.1168 4.1702 4.2697 15 6 4.1785 3.3246 -1.1659 16 8 3.9210 2.7727 -2.2148 17 6 4.7188 4.7314 -1.1675 18 1 4.0597 5.4885 -0.7426 19 6 6.2244 4.9103 -0.9630 20 6 5.6065 5.1460 -2.3426 21 1 5.5315 6.1760 -2.6912 22 6 5.8737 4.1162 -3.4100 23 6 6.5030 2.9295 -3.0826 24 6 6.7443 1.9824 -4.0596 25 6 6.3651 2.2267 -5.3686 26 9 6.6046 1.3035 -6.3255 27 6 5.7396 3.4178 -5.6963 28 6 5.4942 4.3610 -4.7165 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.9563 0.7805 -0.8892 33 1 3.9557 0.7808 0.8908 34 1 2.9314 1.1662 3.2202 35 1 6.5560 5.7853 -0.4039 36 1 6.8242 4.0104 -0.8269 37 1 6.8024 2.7409 -2.0623 38 1 7.2322 1.0537 -3.8030 39 1 5.4437 3.6097 -6.7171 40 1 5.0060 5.2900 -4.9717 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120519734.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:31:35 Heat of formation + Delta-G solvation = -89.845530 kcal Electronic energy + Delta-G solvation = -27692.681717 eV Core-core repulsion = 23582.116551 eV Total energy + Delta-G solvation = -4110.565166 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.121 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.58339 -39.91592 -39.19806 -38.00755 -36.01403 -35.18120 -34.60616 -31.54741 -30.80830 -29.84588 -28.55164 -26.40426 -24.98108 -23.52550 -23.01321 -22.43596 -20.52111 -19.92476 -19.12593 -17.65530 -16.99444 -16.55905 -16.53993 -15.84907 -15.46166 -15.29512 -15.25434 -15.02055 -14.72920 -14.29092 -14.22934 -13.71002 -13.26225 -13.22534 -12.84139 -12.73136 -12.46993 -12.34814 -12.03844 -11.78309 -11.49546 -11.31424 -11.20093 -11.17232 -10.73961 -10.66211 -10.55491 -10.47634 -10.16939 -9.95670 -9.86637 -9.64237 -9.05698 -8.71972 -8.62538 -8.07226 -7.86904 -6.37421 -4.05079 1.50815 1.62650 3.05992 3.15587 3.16720 3.44811 3.65743 3.80478 3.90001 4.04839 4.35136 4.60308 4.64861 4.90938 5.00390 5.05866 5.16628 5.30018 5.42889 5.49648 5.59124 5.68216 5.75434 5.77550 5.92113 5.97713 6.14286 6.19010 6.23984 6.29560 6.40153 6.41899 6.47982 6.55968 6.62866 6.92373 7.03798 7.25892 7.31015 7.44315 7.61851 8.25676 8.95944 9.06386 9.34774 9.73779 10.54394 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.013397 B = 0.004757 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.448302 B = 5884.455089 C = 7233.838041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.371 6.371 3 C 0.484 3.516 4 O -0.517 6.517 5 C 0.138 3.862 6 N -0.429 5.429 7 C -0.312 4.312 8 H 0.106 0.894 9 C 0.035 3.965 10 N -0.891 5.891 11 Si 0.932 3.068 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.273 1.273 15 C 0.491 3.509 16 O -0.581 6.581 17 C -0.132 4.132 18 H 0.122 0.878 19 C -0.154 4.154 20 C -0.108 4.108 21 H 0.114 0.886 22 C -0.025 4.025 23 C -0.067 4.067 24 C -0.146 4.146 25 C 0.081 3.919 26 F -0.150 7.150 27 C -0.154 4.154 28 C -0.086 4.086 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.166 0.834 34 H 0.272 0.728 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.044 2.321 -5.651 7.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.288 6.288 3 C 0.327 3.673 4 O -0.403 6.403 5 C 0.013 3.987 6 N -0.147 5.147 7 C -0.439 4.439 8 H 0.124 0.876 9 C -0.167 4.167 10 N -0.533 5.533 11 Si 0.759 3.241 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.198 1.198 15 C 0.280 3.720 16 O -0.465 6.465 17 C -0.153 4.153 18 H 0.140 0.860 19 C -0.191 4.191 20 C -0.126 4.126 21 H 0.132 0.868 22 C -0.025 4.025 23 C -0.085 4.085 24 C -0.165 4.165 25 C 0.062 3.938 26 F -0.128 7.128 27 C -0.173 4.173 28 C -0.104 4.104 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.182 0.818 34 H 0.084 0.916 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.546 2.202 -6.038 7.873 hybrid contribution -0.616 0.335 0.955 1.185 sum 3.930 2.538 -5.083 6.908 Atomic orbital electron populations 1.22940 0.78975 1.01889 1.01473 1.86488 1.21434 1.35495 1.85421 1.24330 0.92681 0.80353 0.69971 1.90514 1.66902 1.36545 1.46387 1.21250 0.86690 0.85406 1.05327 1.43364 1.57373 1.08729 1.05262 1.19728 1.34238 1.06382 0.83568 0.87630 1.25248 0.95100 0.96271 1.00047 1.69640 1.43127 1.12826 1.27698 0.85895 0.78537 0.79496 0.80154 1.19897 1.20865 1.19823 1.19201 0.82791 0.86367 0.83677 1.90607 1.56410 1.68075 1.31434 1.22078 0.94185 0.97922 1.01112 0.85972 1.23079 0.95160 1.03582 0.97296 1.21113 1.05108 0.98002 0.88389 0.86772 1.18943 0.96140 0.94289 0.93117 1.20757 0.96602 0.92392 0.98705 1.20957 1.03384 1.00700 0.91480 1.17622 1.02358 0.87912 0.85936 1.91444 1.92824 1.65290 1.63288 1.20921 1.02311 0.93576 1.00464 1.20626 0.98869 0.99035 0.91900 0.89511 0.92837 0.93170 0.90985 0.81771 0.91642 0.88097 0.88182 0.85652 0.85414 0.85510 0.85692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 10.56 101.05 1.07 1.81 16 2 O -0.37 -8.18 10.56 -39.25 -0.41 -8.60 16 3 C 0.48 12.10 6.43 36.00 0.23 12.33 16 4 O -0.52 -14.36 16.18 -18.75 -0.30 -14.66 16 5 C 0.14 3.31 5.21 -5.19 -0.03 3.28 16 6 N -0.43 -10.30 2.11 -116.09 -0.25 -10.55 16 7 C -0.31 -7.44 9.32 -14.93 -0.14 -7.58 16 8 H 0.11 2.32 6.38 -52.49 -0.34 1.99 16 9 C 0.03 0.83 5.43 -17.47 -0.09 0.74 16 10 N -0.89 -22.10 8.45 55.50 0.47 -21.63 16 11 Si 0.93 19.13 29.57 -169.99 -5.03 14.10 16 12 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 13 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 14 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 15 C 0.49 11.20 6.41 -10.99 -0.07 11.13 16 16 O -0.58 -14.44 13.70 5.55 0.08 -14.36 16 17 C -0.13 -2.42 4.45 -91.77 -0.41 -2.83 16 18 H 0.12 2.18 8.14 -51.93 -0.42 1.76 16 19 C -0.15 -2.27 9.21 -26.73 -0.25 -2.52 16 20 C -0.11 -1.63 6.04 -91.77 -0.55 -2.19 16 21 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 22 C -0.02 -0.40 4.09 -104.61 -0.43 -0.83 16 23 C -0.07 -1.11 7.30 -39.59 -0.29 -1.40 16 24 C -0.15 -2.36 10.03 -39.52 -0.40 -2.76 16 25 C 0.08 1.30 7.30 -39.42 -0.29 1.01 16 26 F -0.15 -2.38 17.27 2.25 0.04 -2.34 16 27 C -0.15 -2.30 10.03 -39.51 -0.40 -2.70 16 28 C -0.09 -1.30 9.73 -39.59 -0.39 -1.69 16 29 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.05 0.97 8.13 -51.93 -0.42 0.55 16 31 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 32 H 0.07 1.66 7.49 -51.93 -0.39 1.27 16 33 H 0.17 3.98 5.59 -51.93 -0.29 3.69 16 34 H 0.27 6.54 8.32 -40.82 -0.34 6.20 16 35 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.10 1.51 6.17 -51.93 -0.32 1.19 16 37 H 0.13 2.06 5.94 -52.49 -0.31 1.75 16 38 H 0.13 1.82 8.06 -52.48 -0.42 1.39 16 39 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 40 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 343.59 15.07 5.18 5.18 Total: -1.00 -30.46 343.59 -7.24 -37.70 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -4.59 Total: 9.36 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -2.42 Total: 5.81 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: 0.22 Total: -32.18 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -0.64 Total: -37.62 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.46 -7.24 -37.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120519734.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.144 kcal (2) G-P(sol) polarization free energy of solvation -30.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds