Wall clock time and date at job start Sat Apr 11 2020 00:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34228 * 117.00458 * 2 1 4 4 O 1.20828 * 119.99575 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00230 * 179.97438 * 3 2 1 6 6 N 1.46505 * 109.46951 * 180.02562 * 5 3 2 7 7 C 1.37102 * 119.99821 * 90.00295 * 6 5 3 8 8 H 1.08001 * 119.99484 * 164.85333 * 7 6 5 9 9 C 1.38950 * 120.00067 * 344.85576 * 7 6 5 10 10 N 1.31414 * 119.99882 * 9.40319 * 9 7 6 11 11 Si 1.86801 * 119.99814 * 189.40643 * 9 7 6 12 12 H 1.48503 * 109.47195 * 60.00014 * 11 9 7 13 13 H 1.48505 * 109.46848 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47075 * 299.99476 * 11 9 7 15 15 C 1.34777 * 120.00002 * 269.73077 * 6 5 3 16 16 O 1.21289 * 120.00238 * 5.22868 * 15 6 5 17 17 C 1.50699 * 119.99885 * 185.23965 * 15 6 5 18 18 H 1.08999 * 115.54628 * 293.29767 * 17 15 6 19 19 C 1.52999 * 117.50242 * 78.96823 * 17 15 6 20 20 C 1.52997 * 60.00127 * 107.49177 * 19 17 15 21 21 H 1.08997 * 117.50156 * 107.49348 * 20 19 17 22 22 C 1.50710 * 117.49832 * 252.51409 * 20 19 17 23 23 C 1.38248 * 119.97013 * 8.34288 * 22 20 19 24 24 C 1.38195 * 120.02133 * 179.77006 * 23 22 20 25 25 C 1.38457 * 119.97533 * 0.50723 * 24 23 22 26 26 F 1.35103 * 120.02826 * 179.76908 * 25 24 23 27 27 C 1.38464 * 119.95128 * 359.74775 * 25 24 23 28 28 C 1.38198 * 119.96920 * 359.97438 * 27 25 24 29 29 H 1.09002 * 109.47455 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47507 * 299.99970 * 1 2 3 31 31 H 1.08999 * 109.47234 * 60.00127 * 1 2 3 32 32 H 1.08997 * 109.46795 * 60.00430 * 5 3 2 33 33 H 1.08997 * 109.47182 * 299.99959 * 5 3 2 34 34 H 0.96994 * 119.99773 * 174.97121 * 10 9 7 35 35 H 1.09002 * 117.49842 * 214.97777 * 19 17 15 36 36 H 1.09000 * 117.49705 * 359.97438 * 19 17 15 37 37 H 1.08000 * 119.99072 * 0.02562 * 23 22 20 38 38 H 1.08003 * 120.01291 * 180.25450 * 24 23 22 39 39 H 1.07995 * 120.01889 * 179.97438 * 27 25 24 40 40 H 1.07999 * 119.98489 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.1757 3.3367 1.1887 8 1 4.7083 4.2761 1.2053 9 6 3.6871 2.7940 2.3708 10 7 3.2049 1.5716 2.3826 11 14 3.7157 3.8021 3.9432 12 1 2.9106 5.0356 3.7551 13 1 3.1419 3.0017 5.0547 14 1 5.1168 4.1702 4.2697 15 6 4.1785 3.3246 -1.1659 16 8 3.9210 2.7727 -2.2148 17 6 4.7188 4.7314 -1.1675 18 1 4.0597 5.4885 -0.7426 19 6 6.2244 4.9103 -0.9630 20 6 5.6065 5.1460 -2.3426 21 1 5.5315 6.1760 -2.6912 22 6 5.8737 4.1162 -3.4100 23 6 6.5030 2.9295 -3.0826 24 6 6.7443 1.9824 -4.0596 25 6 6.3651 2.2267 -5.3686 26 9 6.6046 1.3035 -6.3255 27 6 5.7396 3.4178 -5.6963 28 6 5.4942 4.3610 -4.7165 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.9563 0.7805 -0.8892 33 1 3.9557 0.7808 0.8908 34 1 2.9314 1.1662 3.2202 35 1 6.5560 5.7853 -0.4039 36 1 6.8242 4.0104 -0.8269 37 1 6.8024 2.7409 -2.0623 38 1 7.2322 1.0537 -3.8030 39 1 5.4437 3.6097 -6.7171 40 1 5.0060 5.2900 -4.9717 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120519734.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:31:34 Heat of formation + Delta-G solvation = -104.874569 kcal Electronic energy + Delta-G solvation = -27693.333425 eV Core-core repulsion = 23582.116551 eV Total energy + Delta-G solvation = -4111.216874 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.121 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.82603 -41.52460 -40.84892 -39.51819 -37.54050 -36.86595 -36.45326 -33.36538 -32.00219 -31.14642 -30.25723 -27.99133 -26.74189 -24.78035 -24.46264 -23.68305 -22.07526 -21.40493 -20.84198 -19.06131 -18.51052 -18.39000 -18.12318 -17.30840 -17.18843 -16.94192 -16.55613 -16.49658 -16.10453 -15.97763 -15.65659 -15.16438 -14.80418 -14.41643 -14.39000 -14.16359 -14.09483 -13.88120 -13.42119 -13.33527 -12.99421 -12.91143 -12.83988 -12.53778 -12.33734 -12.27070 -12.14092 -11.84898 -11.63639 -11.57330 -11.40903 -11.21133 -10.93726 -10.33429 -9.96619 -9.83508 -9.17664 -8.17903 -5.89761 0.27119 0.42520 1.43106 1.49248 1.57491 1.67387 1.82646 2.20991 2.35336 2.55095 2.92760 3.15056 3.26793 3.39254 3.71735 3.85894 4.00665 4.07095 4.09886 4.23576 4.28245 4.32363 4.35074 4.41064 4.51076 4.60679 4.66831 4.71632 4.93042 5.01147 5.07835 5.16275 5.18276 5.23108 5.28378 5.41006 5.50699 5.61373 5.71837 5.80251 6.06548 6.43130 7.13894 7.16227 7.57268 7.96296 8.74096 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.013397 B = 0.004757 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.448302 B = 5884.455089 C = 7233.838041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.375 6.375 3 C 0.484 3.516 4 O -0.553 6.553 5 C 0.138 3.862 6 N -0.442 5.442 7 C -0.322 4.322 8 H 0.122 0.878 9 C -0.012 4.012 10 N -0.915 5.915 11 Si 0.993 3.007 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.253 1.253 15 C 0.486 3.514 16 O -0.609 6.609 17 C -0.164 4.164 18 H 0.127 0.873 19 C -0.134 4.134 20 C -0.092 4.092 21 H 0.149 0.851 22 C -0.042 4.042 23 C -0.082 4.082 24 C -0.160 4.160 25 C 0.065 3.935 26 F -0.152 7.152 27 C -0.155 4.155 28 C -0.090 4.090 29 H 0.134 0.866 30 H 0.045 0.955 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.161 0.839 34 H 0.269 0.731 35 H 0.134 0.866 36 H 0.092 0.908 37 H 0.120 0.880 38 H 0.136 0.864 39 H 0.152 0.848 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.520 3.908 -5.759 8.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.292 6.292 3 C 0.329 3.671 4 O -0.442 6.442 5 C 0.012 3.988 6 N -0.161 5.161 7 C -0.448 4.448 8 H 0.140 0.860 9 C -0.209 4.209 10 N -0.557 5.557 11 Si 0.818 3.182 12 H -0.205 1.205 13 H -0.216 1.216 14 H -0.178 1.178 15 C 0.276 3.724 16 O -0.495 6.495 17 C -0.184 4.184 18 H 0.144 0.856 19 C -0.171 4.171 20 C -0.110 4.110 21 H 0.167 0.833 22 C -0.042 4.042 23 C -0.100 4.100 24 C -0.179 4.179 25 C 0.046 3.954 26 F -0.131 7.131 27 C -0.173 4.173 28 C -0.107 4.107 29 H 0.152 0.848 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.177 0.823 34 H 0.079 0.921 35 H 0.152 0.848 36 H 0.110 0.890 37 H 0.138 0.862 38 H 0.154 0.846 39 H 0.170 0.830 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.043 3.777 -6.154 8.807 hybrid contribution -0.818 -0.258 0.903 1.246 sum 4.225 3.519 -5.251 7.603 Atomic orbital electron populations 1.23309 0.76399 1.04941 1.01128 1.86456 1.23972 1.33981 1.84766 1.24507 0.93084 0.80536 0.69002 1.90475 1.67717 1.37760 1.48276 1.21210 0.86444 0.86239 1.04866 1.43596 1.57793 1.08713 1.06012 1.20128 1.34251 1.06889 0.83576 0.86001 1.26056 0.94998 0.97098 1.02795 1.69751 1.44079 1.13988 1.27919 0.84963 0.79229 0.77537 0.76519 1.20465 1.21616 1.17751 1.19979 0.81749 0.87899 0.82784 1.90568 1.57325 1.69343 1.32238 1.21998 0.96283 0.95012 1.05137 0.85565 1.23203 0.92021 1.04486 0.97373 1.21316 1.02666 0.99182 0.87807 0.83311 1.19243 0.96287 0.94502 0.94212 1.20837 0.97457 0.93108 0.98572 1.21147 1.03736 1.01188 0.91784 1.17844 1.03054 0.88570 0.85940 1.91433 1.92915 1.65461 1.63244 1.21265 1.01310 0.92875 1.01856 1.21001 0.98278 1.00095 0.91359 0.84773 0.93583 0.93146 0.91079 0.82289 0.92065 0.84770 0.89002 0.86229 0.84565 0.82990 0.82903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.24 10.56 113.37 1.20 2.44 16 2 O -0.38 -16.65 10.56 -51.40 -0.54 -17.19 16 3 C 0.48 24.73 6.43 71.24 0.46 25.19 16 4 O -0.55 -31.35 16.18 21.96 0.36 -31.00 16 5 C 0.14 6.79 5.21 85.63 0.45 7.24 16 6 N -0.44 -21.53 2.11 -639.60 -1.35 -22.89 16 7 C -0.32 -15.27 9.32 84.04 0.78 -14.49 16 8 H 0.12 5.21 6.38 -2.91 -0.02 5.19 16 9 C -0.01 -0.55 5.43 84.93 0.46 -0.09 16 10 N -0.91 -46.04 8.45 21.66 0.18 -45.86 16 11 Si 0.99 38.72 29.57 68.60 2.03 40.75 16 12 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 13 H -0.29 -11.54 7.11 99.48 0.71 -10.84 16 14 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 15 C 0.49 22.22 6.41 87.66 0.56 22.78 16 16 O -0.61 -30.64 13.70 -3.06 -0.04 -30.69 16 17 C -0.16 -5.76 4.45 -11.54 -0.05 -5.81 16 18 H 0.13 4.31 8.14 -2.39 -0.02 4.29 16 19 C -0.13 -3.62 9.21 30.59 0.28 -3.34 16 20 C -0.09 -2.54 6.04 -11.54 -0.07 -2.61 16 21 H 0.15 3.07 8.14 -2.39 -0.02 3.05 16 22 C -0.04 -1.32 4.09 -19.86 -0.08 -1.40 16 23 C -0.08 -2.72 7.30 22.26 0.16 -2.56 16 24 C -0.16 -5.18 10.03 22.31 0.22 -4.96 16 25 C 0.06 2.05 7.30 22.38 0.16 2.22 16 26 F -0.15 -4.76 17.27 44.97 0.78 -3.98 16 27 C -0.15 -4.35 10.03 22.31 0.22 -4.13 16 28 C -0.09 -2.51 9.73 22.26 0.22 -2.29 16 29 H 0.13 3.32 8.14 -2.39 -0.02 3.30 16 30 H 0.05 1.66 8.13 -2.39 -0.02 1.64 16 31 H 0.05 1.73 8.13 -2.39 -0.02 1.72 16 32 H 0.07 3.41 7.49 -2.39 -0.02 3.39 16 33 H 0.16 7.98 5.59 -2.39 -0.01 7.97 16 34 H 0.27 13.12 8.32 -92.71 -0.77 12.35 16 35 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.09 2.66 6.17 -2.39 -0.01 2.64 16 37 H 0.12 4.00 5.94 -2.91 -0.02 3.98 16 38 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 39 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 40 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -66.73 343.59 7.46 -59.26 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 1.08 Total: 33.40 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: 4.98 Total: 18.19 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: -1.17 Total: -68.74 kcal Atomic # 8 Polarization: -78.65 SS G_CDS: -0.23 Total: -78.88 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.78 Total: -3.98 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Total: -66.73 7.46 -59.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120519734.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.612 kcal (2) G-P(sol) polarization free energy of solvation -66.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds