Wall clock time and date at job start Sat Apr 11 2020 00:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 C 1.50703 * 109.47063 * 119.99447 * 2 1 3 5 5 O 1.21283 * 119.99488 * 120.00024 * 4 2 1 6 6 N 1.34777 * 120.00290 * 300.00464 * 4 2 1 7 7 C 1.46498 * 119.99828 * 180.27728 * 6 4 2 8 8 C 1.52996 * 109.47059 * 179.72339 * 7 6 4 9 9 F 1.39898 * 109.47563 * 59.99365 * 8 7 6 10 10 F 1.39903 * 109.47538 * 179.97438 * 8 7 6 11 11 F 1.39907 * 109.46837 * 299.99561 * 8 7 6 12 12 N 1.46492 * 109.47126 * 239.99804 * 2 1 3 13 13 C 1.35314 * 125.86960 * 324.99781 * 12 2 1 14 14 C 1.35350 * 106.17497 * 180.02562 * 13 12 2 15 15 C 1.50700 * 126.75054 * 180.02562 * 14 13 12 16 16 N 1.46500 * 109.47597 * 94.99568 * 15 14 13 17 17 C 1.36937 * 120.00009 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99983 * 0.02562 * 17 16 15 19 19 C 1.38812 * 119.99873 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99996 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00111 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47119 * 60.00158 * 21 19 17 23 23 H 1.48507 * 109.47253 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47324 * 300.00381 * 21 19 17 25 25 N 1.33771 * 106.49852 * 0.02562 * 14 13 12 26 26 N 1.28632 * 108.88536 * 359.73525 * 25 14 13 27 27 H 1.08993 * 109.46731 * 60.00419 * 1 2 3 28 28 H 1.09003 * 109.46582 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46852 * 300.00183 * 1 2 3 30 30 H 0.97001 * 119.99727 * 359.97438 * 6 4 2 31 31 H 1.09004 * 109.46963 * 299.72135 * 7 6 4 32 32 H 1.08994 * 109.47567 * 59.72287 * 7 6 4 33 33 H 1.08003 * 126.91162 * 359.97438 * 13 12 2 34 34 H 1.09000 * 109.46920 * 214.99801 * 15 14 13 35 35 H 1.09005 * 109.47020 * 334.99443 * 15 14 13 36 36 H 0.96998 * 119.99211 * 0.02562 * 16 15 14 37 37 H 0.97000 * 120.00128 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 8 2.7297 -1.6964 1.1193 6 7 1.7068 -0.2498 2.4546 7 6 2.2001 -0.9368 3.6508 8 6 1.6947 -0.2124 4.9000 9 9 0.2957 -0.2129 4.9055 10 9 2.1653 -0.8687 6.0423 11 9 2.1604 1.1069 4.8944 12 7 2.0184 -0.6906 -1.1961 13 6 1.4358 -1.7588 -1.7882 14 6 2.2132 -2.0710 -2.8513 15 6 1.9884 -3.1904 -3.8349 16 7 1.2718 -2.6762 -5.0047 17 6 0.9549 -3.5173 -6.0378 18 1 1.2328 -4.5599 -5.9900 19 6 0.2755 -3.0301 -7.1459 20 7 -0.0636 -1.7597 -7.2039 21 14 -0.1576 -4.1776 -8.5548 22 1 -1.0276 -5.2713 -8.0529 23 1 -0.8757 -3.4176 -9.6094 24 1 1.0868 -4.7559 -9.1226 25 7 3.2203 -1.1906 -2.8572 26 7 3.0731 -0.3830 -1.8668 27 1 -0.3632 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.1493 0.5390 2.5436 31 1 1.8373 -1.9647 3.6551 32 1 3.2901 -0.9363 3.6466 33 1 0.5328 -2.2616 -1.4750 34 1 2.9498 -3.5977 -4.1478 35 1 1.3975 -3.9755 -3.3631 36 1 1.0226 -1.7398 -5.0476 37 1 -0.5381 -1.4192 -7.9784 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331873373.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:37 Heat of formation + Delta-G solvation = -97.738277 kcal Electronic energy + Delta-G solvation = -26438.422484 eV Core-core repulsion = 21837.871036 eV Total energy + Delta-G solvation = -4600.551449 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.23176 -48.74892 -48.70547 -44.32800 -41.21146 -37.05986 -36.44874 -36.22092 -33.79404 -32.19912 -31.63652 -30.16335 -27.77672 -26.23228 -24.74276 -24.64251 -23.27177 -22.31151 -21.63358 -19.80407 -19.69601 -19.55072 -19.26542 -18.30983 -18.00798 -17.07851 -16.84591 -16.58885 -16.34220 -15.91639 -15.68023 -15.57292 -15.39899 -15.17662 -15.13080 -15.01655 -14.85375 -14.83765 -14.55425 -14.31160 -13.83467 -13.72958 -13.49201 -13.07696 -13.05710 -12.77722 -12.71843 -12.54733 -12.12154 -11.95778 -11.80857 -11.69234 -10.95568 -10.92359 -10.67297 -10.20135 -9.00804 -7.91567 -5.22042 0.47029 1.06238 1.12367 1.45519 1.46331 1.52444 1.55304 1.61375 1.78361 2.58719 2.61048 2.91062 3.00106 3.22597 3.28825 3.40332 3.53381 3.65489 3.96101 4.05082 4.16349 4.22984 4.24386 4.46707 4.53204 4.62974 4.75438 4.84661 5.05206 5.12662 5.17777 5.52151 5.55061 5.98083 6.27949 6.71420 7.34950 7.48147 8.05386 8.32702 9.32148 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.033213 B = 0.002181 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.851973 B =12837.489172 C =12942.821398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.122 3.878 3 H 0.168 0.832 4 C 0.522 3.478 5 O -0.554 6.554 6 N -0.705 5.705 7 C 0.078 3.922 8 C 0.460 3.540 9 F -0.177 7.177 10 F -0.177 7.177 11 F -0.180 7.180 12 N -0.274 5.274 13 C -0.007 4.007 14 C -0.037 4.037 15 C 0.237 3.763 16 N -0.737 5.737 17 C -0.245 4.245 18 H 0.083 0.917 19 C -0.077 4.077 20 N -0.972 5.972 21 Si 0.980 3.020 22 H -0.272 1.272 23 H -0.296 1.296 24 H -0.280 1.280 25 N -0.294 5.294 26 N -0.106 5.106 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.133 0.867 30 H 0.427 0.573 31 H 0.126 0.874 32 H 0.120 0.880 33 H 0.221 0.779 34 H 0.027 0.973 35 H 0.061 0.939 36 H 0.372 0.628 37 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.020 6.579 31.202 31.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.018 3.982 3 H 0.185 0.815 4 C 0.307 3.693 5 O -0.431 6.431 6 N -0.362 5.362 7 C -0.047 4.047 8 C 0.405 3.595 9 F -0.159 7.159 10 F -0.158 7.158 11 F -0.161 7.161 12 N -0.068 5.068 13 C -0.159 4.159 14 C -0.175 4.175 15 C 0.109 3.891 16 N -0.380 5.380 17 C -0.377 4.377 18 H 0.101 0.899 19 C -0.269 4.269 20 N -0.623 5.623 21 Si 0.808 3.192 22 H -0.197 1.197 23 H -0.223 1.223 24 H -0.206 1.206 25 N -0.161 5.161 26 N -0.084 5.084 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.151 0.849 30 H 0.266 0.734 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.237 0.763 34 H 0.045 0.955 35 H 0.078 0.922 36 H 0.203 0.797 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.317 6.695 31.004 31.720 hybrid contribution -1.198 -0.268 -0.528 1.336 sum -1.514 6.428 30.476 31.183 Atomic orbital electron populations 1.22346 0.86395 1.05900 1.07316 1.21935 0.99635 0.98465 0.78210 0.81473 1.20533 0.79747 0.84193 0.84854 1.90863 1.38134 1.27329 1.86728 1.45294 1.54310 1.33155 1.03401 1.22552 1.03525 0.98379 0.80245 1.20355 0.75720 0.77630 0.85801 1.93246 1.29559 1.96345 1.96743 1.93239 1.88370 1.80910 1.53319 1.93247 1.88407 1.37766 1.96728 1.47118 1.17382 1.21646 1.20631 1.23582 1.02941 0.93178 0.96158 1.22249 0.94576 1.01087 0.99594 1.18938 0.95349 0.90249 0.84588 1.42478 1.67976 1.09603 1.17929 1.19656 1.28870 0.92784 0.96359 0.89922 1.25637 1.02104 0.97755 1.01382 1.69846 1.46558 1.14597 1.31249 0.85123 0.77854 0.77732 0.78489 1.19744 1.22270 1.20619 1.74992 1.22934 1.04318 1.13840 1.78116 1.05232 1.21791 1.03273 0.89506 0.90154 0.84851 0.73402 0.85634 0.86202 0.76287 0.95491 0.92165 0.79689 0.94019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 8.73 71.98 0.63 -0.55 16 2 C 0.12 1.77 3.65 44.25 0.16 1.93 16 3 H 0.17 1.56 8.14 -2.39 -0.02 1.54 16 4 C 0.52 8.02 7.22 87.66 0.63 8.65 16 5 O -0.55 -14.54 16.42 -3.04 -0.05 -14.59 16 6 N -0.71 -4.83 5.31 -463.07 -2.46 -7.28 16 7 C 0.08 0.52 5.64 86.38 0.49 1.01 16 8 C 0.46 3.14 3.11 71.98 0.22 3.36 16 9 F -0.18 -1.34 17.18 44.97 0.77 -0.57 16 10 F -0.18 -1.71 17.32 44.97 0.78 -0.93 16 11 F -0.18 -1.50 17.18 44.97 0.77 -0.72 16 12 N -0.27 -7.59 2.75 -330.73 -0.91 -8.50 16 13 C -0.01 -0.22 10.60 83.49 0.89 0.66 16 14 C -0.04 -1.49 6.62 41.60 0.28 -1.22 16 15 C 0.24 10.39 6.82 85.63 0.58 10.97 16 16 N -0.74 -39.57 5.59 -347.17 -1.94 -41.51 16 17 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 18 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 19 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 20 N -0.97 -60.92 13.06 21.65 0.28 -60.63 16 21 Si 0.98 46.63 29.55 68.60 2.03 48.66 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 24 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 25 N -0.29 -12.78 12.41 -48.60 -0.60 -13.38 16 26 N -0.11 -3.89 13.17 37.02 0.49 -3.40 16 27 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.08 0.65 7.17 -2.39 -0.02 0.64 16 29 H 0.13 -0.16 7.56 -2.39 -0.02 -0.18 16 30 H 0.43 0.24 7.78 -92.71 -0.72 -0.49 16 31 H 0.13 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.22 4.92 7.30 -2.91 -0.02 4.90 16 34 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 36 H 0.37 21.63 7.66 -92.71 -0.71 20.92 16 37 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -84.39 341.59 4.07 -80.32 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -0.28 Total: 14.91 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 5.18 Total: 7.63 kcal Atomic # 7 Polarization: -129.57 SS G_CDS: -5.14 Total: -134.71 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.05 Total: -14.59 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 2.32 Total: -2.22 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -84.39 4.07 -80.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331873373.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.414 kcal (2) G-P(sol) polarization free energy of solvation -84.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds