Wall clock time and date at job start Sat Apr 11 2020 00:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47023 * 266.05200 * 3 2 1 5 5 C 1.36941 * 120.00082 * 269.23771 * 4 3 2 6 6 H 1.08007 * 119.99480 * 321.68331 * 5 4 3 7 7 C 1.38803 * 120.00336 * 141.67994 * 5 4 3 8 8 N 1.31620 * 120.00180 * 157.72540 * 7 5 4 9 9 Si 1.86800 * 120.00183 * 337.72289 * 7 5 4 10 10 H 1.48509 * 109.46956 * 95.70455 * 9 7 5 11 11 H 1.48496 * 109.47204 * 215.70361 * 9 7 5 12 12 H 1.48497 * 109.47180 * 335.70475 * 9 7 5 13 13 C 1.46503 * 120.00528 * 89.23472 * 4 3 2 14 14 C 1.53001 * 109.46986 * 89.99877 * 13 4 3 15 15 H 1.08998 * 109.47105 * 305.00359 * 14 13 4 16 16 C 1.53001 * 109.47109 * 65.00131 * 14 13 4 17 17 C 1.50693 * 109.47056 * 185.00375 * 14 13 4 18 18 C 1.38240 * 120.00355 * 120.00202 * 17 14 13 19 19 C 1.38230 * 120.00096 * 179.97438 * 18 17 14 20 20 C 1.38236 * 120.00120 * 359.97438 * 19 18 17 21 21 S 1.76199 * 119.99778 * 180.02562 * 20 19 18 22 22 C 1.81393 * 104.45286 * 89.99917 * 21 20 19 23 23 O 1.42105 * 104.28009 * 333.92563 * 21 20 19 24 24 O 1.42107 * 104.27451 * 206.07108 * 21 20 19 25 25 C 1.38234 * 120.00087 * 0.27689 * 20 19 18 26 26 C 1.38234 * 119.99830 * 359.51463 * 25 20 19 27 27 H 4.40639 * 5.51305 * 179.97438 * 4 1 2 28 28 H 1.08994 * 109.47515 * 146.04854 * 3 2 1 29 29 H 1.09005 * 109.47164 * 26.04658 * 3 2 1 30 30 H 0.96995 * 120.00658 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.46507 * 330.00098 * 13 4 3 32 32 H 1.09003 * 109.47224 * 209.99988 * 13 4 3 33 33 H 1.09007 * 109.46772 * 60.00022 * 16 14 13 34 34 H 1.08995 * 109.47241 * 179.97438 * 16 14 13 35 35 H 1.08997 * 109.47169 * 300.00366 * 16 14 13 36 36 H 1.07997 * 119.99412 * 359.97438 * 18 17 14 37 37 H 1.08003 * 119.99567 * 180.02562 * 19 18 17 38 38 H 1.08997 * 109.47068 * 299.99697 * 22 21 20 39 39 H 1.09001 * 109.47255 * 179.97438 * 22 21 20 40 40 H 1.09002 * 109.47050 * 59.99939 * 22 21 20 41 41 H 1.08000 * 119.99872 * 179.72450 * 25 20 19 42 42 H 1.07997 * 119.99945 * 180.27083 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.0960 1.3779 5 6 3.3768 1.3232 1.9351 6 1 3.8118 2.1109 1.3377 7 6 3.0636 1.5548 3.2673 8 7 3.6635 2.5239 3.9256 9 14 1.7905 0.4911 4.1261 10 1 2.4743 -0.6036 4.8606 11 1 1.0163 1.3213 5.0834 12 1 0.8690 -0.0900 3.1170 13 6 3.3630 -1.1215 2.1600 14 6 4.8026 -1.5971 1.9539 15 1 4.9948 -1.7224 0.8883 16 6 5.7695 -0.5596 2.5280 17 6 5.0023 -2.9140 2.6586 18 6 5.3739 -4.0340 1.9385 19 6 5.5576 -5.2419 2.5851 20 6 5.3702 -5.3298 3.9519 21 16 5.6050 -6.8693 4.7760 22 6 7.3572 -6.8690 5.2453 23 8 5.3576 -7.8451 3.7731 24 8 4.7799 -6.7787 5.9295 25 6 4.9935 -4.2111 4.6712 26 6 4.8140 -3.0022 4.0253 27 1 -1.0500 0.0002 -0.0001 28 1 3.0090 0.8532 -0.5739 29 1 3.0097 -0.9225 -0.4513 30 1 3.4444 2.6860 4.8564 31 1 2.6730 -1.8990 1.8319 32 1 3.1976 -0.9111 3.2166 33 1 5.5772 -0.4343 3.5936 34 1 6.7950 -0.8986 2.3816 35 1 5.6250 0.3929 2.0183 36 1 5.5208 -3.9652 0.8708 37 1 5.8484 -6.1167 2.0225 38 1 7.9732 -6.7889 4.3496 39 1 7.5937 -7.7960 5.7675 40 1 7.5576 -6.0217 5.9010 41 1 4.8427 -4.2808 5.7384 42 1 4.5239 -2.1272 4.5880 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333871907.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:42 Heat of formation + Delta-G solvation = 34.928634 kcal Electronic energy + Delta-G solvation = -24773.772985 eV Core-core repulsion = 21234.831609 eV Total energy + Delta-G solvation = -3538.941376 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -39.56652 -37.24122 -36.94517 -36.07843 -34.02700 -32.48867 -31.19271 -31.02341 -29.89284 -29.25466 -26.72553 -26.08303 -23.64832 -22.81902 -21.66811 -20.00896 -19.12606 -17.91131 -17.47630 -16.92075 -16.38179 -16.14078 -15.74856 -15.15458 -14.92797 -14.59908 -14.19374 -13.84764 -13.66615 -13.50963 -13.48037 -13.34077 -13.07086 -12.72274 -12.60907 -12.33801 -12.22834 -12.11868 -11.87873 -11.66477 -11.38767 -11.29716 -11.02038 -10.74982 -10.72511 -10.55158 -10.32992 -9.86796 -9.74951 -9.63486 -9.39496 -9.03158 -8.97393 -8.59841 -7.07655 -6.13351 -3.56701 -0.10429 0.87657 1.36298 2.72763 3.20302 3.40365 3.42051 3.47978 3.51424 3.56619 3.84085 3.94057 4.41615 4.47958 4.60705 4.74662 4.86280 4.90759 5.10283 5.20825 5.32699 5.33751 5.38790 5.43299 5.58603 5.73605 5.81023 5.94695 6.02510 6.11429 6.14035 6.27929 6.34032 6.37575 6.49164 6.52209 6.63425 6.70889 6.89678 6.93265 7.27036 7.89519 8.21617 8.37087 8.80835 9.55261 9.92884 11.00928 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.017241 B = 0.003578 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.613999 B = 7824.453476 C = 8202.533389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.168 4.168 3 C 0.238 3.762 4 N -0.592 5.592 5 C -0.271 4.271 6 H 0.084 0.916 7 C 0.048 3.952 8 N -0.891 5.891 9 Si 0.864 3.136 10 H -0.284 1.284 11 H -0.300 1.300 12 H -0.264 1.264 13 C 0.146 3.854 14 C -0.079 4.079 15 H 0.076 0.924 16 C -0.128 4.128 17 C -0.003 4.003 18 C -0.143 4.143 19 C -0.025 4.025 20 C -0.675 4.675 21 S 2.503 3.497 22 C -0.651 4.651 23 O -0.943 6.943 24 O -0.941 6.941 25 C -0.023 4.023 26 C -0.137 4.137 27 H 0.203 0.797 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.265 0.735 31 H 0.041 0.959 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.031 0.969 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.132 0.868 41 H 0.138 0.862 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.144 -15.913 -0.867 17.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.171 4.171 3 C 0.113 3.887 4 N -0.311 5.311 5 C -0.399 4.399 6 H 0.102 0.898 7 C -0.154 4.154 8 N -0.531 5.531 9 Si 0.693 3.307 10 H -0.212 1.212 11 H -0.228 1.228 12 H -0.189 1.189 13 C 0.020 3.980 14 C -0.100 4.100 15 H 0.095 0.905 16 C -0.185 4.185 17 C -0.004 4.004 18 C -0.162 4.162 19 C -0.044 4.044 20 C -0.763 4.763 21 S 2.683 3.317 22 C -0.800 4.800 23 O -0.940 6.940 24 O -0.939 6.939 25 C -0.042 4.042 26 C -0.156 4.156 27 H 0.220 0.780 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.111 0.889 36 H 0.148 0.852 37 H 0.155 0.845 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.155 0.845 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.581 -16.400 -0.557 18.076 hybrid contribution -0.636 0.239 0.571 0.887 sum 6.945 -16.161 0.013 17.590 Atomic orbital electron populations 1.24709 0.95848 1.03988 1.03193 1.25177 0.96284 0.97664 0.97993 1.18261 0.81705 1.00393 0.88372 1.44201 1.73415 1.02612 1.10904 1.18737 1.36406 0.89717 0.95057 0.89811 1.25420 0.96933 0.95850 0.97187 1.69838 1.40616 1.32707 1.09895 0.87162 0.84212 0.79794 0.79490 1.21224 1.22751 1.18883 1.21255 0.91751 0.88227 0.96739 1.21015 0.99757 0.90227 0.98978 0.90550 1.21708 0.95253 0.99926 1.01573 1.20617 0.90058 0.95913 0.93843 1.21223 1.02341 0.92314 1.00308 1.20842 0.93385 0.98002 0.92152 1.30249 1.20183 1.20243 1.05622 1.04963 0.77477 0.74491 0.74737 1.30231 1.25371 1.11647 1.12794 1.93569 1.83809 1.58045 1.58587 1.93581 1.63536 1.86291 1.50443 1.20899 0.92177 0.91217 0.99883 1.21325 1.01311 0.98131 0.94815 0.78046 0.90174 0.91655 0.92539 0.94089 0.92266 0.93082 0.94952 0.88874 0.85173 0.84533 0.85034 0.85304 0.84969 0.84461 0.84853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.84 19.25 29.55 0.57 -4.27 16 2 C -0.17 -3.37 13.68 -37.12 -0.51 -3.88 16 3 C 0.24 4.47 6.14 -6.83 -0.04 4.43 16 4 N -0.59 -12.85 1.90 -176.57 -0.34 -13.19 16 5 C -0.27 -6.89 7.84 -15.06 -0.12 -7.01 16 6 H 0.08 2.30 8.06 -52.48 -0.42 1.87 16 7 C 0.05 1.29 5.30 -17.43 -0.09 1.20 16 8 N -0.89 -25.36 13.97 55.49 0.78 -24.59 16 9 Si 0.86 21.57 25.07 -169.99 -4.26 17.31 16 10 H -0.28 -6.76 6.69 56.52 0.38 -6.38 16 11 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 12 H -0.26 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.15 2.94 3.75 -4.04 -0.02 2.93 16 14 C -0.08 -1.33 2.77 -91.77 -0.25 -1.58 16 15 H 0.08 1.17 7.88 -51.93 -0.41 0.76 16 16 C -0.13 -2.30 8.56 37.16 0.32 -1.98 16 17 C 0.00 -0.05 4.78 -104.62 -0.50 -0.55 16 18 C -0.14 -1.85 9.67 -39.58 -0.38 -2.24 16 19 C -0.02 -0.29 9.47 -39.59 -0.37 -0.67 16 20 C -0.68 -8.12 5.66 -39.58 -0.22 -8.34 16 21 S 2.50 24.75 5.80 -107.50 -0.62 24.12 16 22 C -0.65 -3.51 10.79 101.05 1.09 -2.42 16 23 O -0.94 -11.94 17.13 -57.54 -0.99 -12.93 16 24 O -0.94 -12.50 17.12 -57.54 -0.98 -13.48 16 25 C -0.02 -0.31 9.47 -39.58 -0.37 -0.68 16 26 C -0.14 -2.13 8.76 -39.58 -0.35 -2.48 16 27 H 0.20 3.02 7.80 -54.09 -0.42 2.59 16 28 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 29 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 32 H 0.06 1.32 2.80 -51.93 -0.15 1.18 16 33 H 0.05 0.99 7.39 -51.92 -0.38 0.61 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 1.93 6.35 -51.93 -0.33 1.60 16 36 H 0.13 1.40 7.95 -52.49 -0.42 0.99 16 37 H 0.14 1.30 7.57 -52.48 -0.40 0.90 16 38 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.13 0.48 8.14 -51.92 -0.42 0.06 16 40 H 0.13 0.58 8.14 -51.92 -0.42 0.16 16 41 H 0.14 1.61 7.56 -52.49 -0.40 1.21 16 42 H 0.13 2.22 7.16 -52.49 -0.38 1.84 16 LS Contribution 363.37 15.07 5.48 5.48 Total: -1.00 -34.01 363.37 -8.00 -42.01 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -5.81 Total: 2.82 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: -1.26 Total: -27.55 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.44 Total: -37.77 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -1.97 Total: -26.41 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.26 Total: 17.31 kcal Atomic # 16 Polarization: 24.75 SS G_CDS: -0.62 Total: 24.12 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.01 -8.00 -42.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333871907.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.938 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds