Wall clock time and date at job start Sat Apr 11 2020 00:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47023 * 266.05200 * 3 2 1 5 5 C 1.36941 * 120.00082 * 269.23771 * 4 3 2 6 6 H 1.08007 * 119.99480 * 321.68331 * 5 4 3 7 7 C 1.38803 * 120.00336 * 141.67994 * 5 4 3 8 8 N 1.31620 * 120.00180 * 157.72540 * 7 5 4 9 9 Si 1.86800 * 120.00183 * 337.72289 * 7 5 4 10 10 H 1.48509 * 109.46956 * 95.70455 * 9 7 5 11 11 H 1.48496 * 109.47204 * 215.70361 * 9 7 5 12 12 H 1.48497 * 109.47180 * 335.70475 * 9 7 5 13 13 C 1.46503 * 120.00528 * 89.23472 * 4 3 2 14 14 C 1.53001 * 109.46986 * 89.99877 * 13 4 3 15 15 H 1.08998 * 109.47105 * 305.00359 * 14 13 4 16 16 C 1.53001 * 109.47109 * 65.00131 * 14 13 4 17 17 C 1.50693 * 109.47056 * 185.00375 * 14 13 4 18 18 C 1.38240 * 120.00355 * 120.00202 * 17 14 13 19 19 C 1.38230 * 120.00096 * 179.97438 * 18 17 14 20 20 C 1.38236 * 120.00120 * 359.97438 * 19 18 17 21 21 S 1.76199 * 119.99778 * 180.02562 * 20 19 18 22 22 C 1.81393 * 104.45286 * 89.99917 * 21 20 19 23 23 O 1.42105 * 104.28009 * 333.92563 * 21 20 19 24 24 O 1.42107 * 104.27451 * 206.07108 * 21 20 19 25 25 C 1.38234 * 120.00087 * 0.27689 * 20 19 18 26 26 C 1.38234 * 119.99830 * 359.51463 * 25 20 19 27 27 H 4.40639 * 5.51305 * 179.97438 * 4 1 2 28 28 H 1.08994 * 109.47515 * 146.04854 * 3 2 1 29 29 H 1.09005 * 109.47164 * 26.04658 * 3 2 1 30 30 H 0.96995 * 120.00658 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.46507 * 330.00098 * 13 4 3 32 32 H 1.09003 * 109.47224 * 209.99988 * 13 4 3 33 33 H 1.09007 * 109.46772 * 60.00022 * 16 14 13 34 34 H 1.08995 * 109.47241 * 179.97438 * 16 14 13 35 35 H 1.08997 * 109.47169 * 300.00366 * 16 14 13 36 36 H 1.07997 * 119.99412 * 359.97438 * 18 17 14 37 37 H 1.08003 * 119.99567 * 180.02562 * 19 18 17 38 38 H 1.08997 * 109.47068 * 299.99697 * 22 21 20 39 39 H 1.09001 * 109.47255 * 179.97438 * 22 21 20 40 40 H 1.09002 * 109.47050 * 59.99939 * 22 21 20 41 41 H 1.08000 * 119.99872 * 179.72450 * 25 20 19 42 42 H 1.07997 * 119.99945 * 180.27083 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.0960 1.3779 5 6 3.3768 1.3232 1.9351 6 1 3.8118 2.1109 1.3377 7 6 3.0636 1.5548 3.2673 8 7 3.6635 2.5239 3.9256 9 14 1.7905 0.4911 4.1261 10 1 2.4743 -0.6036 4.8606 11 1 1.0163 1.3213 5.0834 12 1 0.8690 -0.0900 3.1170 13 6 3.3630 -1.1215 2.1600 14 6 4.8026 -1.5971 1.9539 15 1 4.9948 -1.7224 0.8883 16 6 5.7695 -0.5596 2.5280 17 6 5.0023 -2.9140 2.6586 18 6 5.3739 -4.0340 1.9385 19 6 5.5576 -5.2419 2.5851 20 6 5.3702 -5.3298 3.9519 21 16 5.6050 -6.8693 4.7760 22 6 7.3572 -6.8690 5.2453 23 8 5.3576 -7.8451 3.7731 24 8 4.7799 -6.7787 5.9295 25 6 4.9935 -4.2111 4.6712 26 6 4.8140 -3.0022 4.0253 27 1 -1.0500 0.0002 -0.0001 28 1 3.0090 0.8532 -0.5739 29 1 3.0097 -0.9225 -0.4513 30 1 3.4444 2.6860 4.8564 31 1 2.6730 -1.8990 1.8319 32 1 3.1976 -0.9111 3.2166 33 1 5.5772 -0.4343 3.5936 34 1 6.7950 -0.8986 2.3816 35 1 5.6250 0.3929 2.0183 36 1 5.5208 -3.9652 0.8708 37 1 5.8484 -6.1167 2.0225 38 1 7.9732 -6.7889 4.3496 39 1 7.5937 -7.7960 5.7675 40 1 7.5576 -6.0217 5.9010 41 1 4.8427 -4.2808 5.7384 42 1 4.5239 -2.1272 4.5880 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333871907.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:41 Heat of formation + Delta-G solvation = 12.628324 kcal Electronic energy + Delta-G solvation = -24774.739999 eV Core-core repulsion = 21234.831609 eV Total energy + Delta-G solvation = -3539.908390 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.68472 -38.49687 -38.11853 -36.96177 -35.38756 -34.30443 -32.86828 -32.04639 -30.71444 -30.13402 -28.30998 -27.83826 -24.90699 -23.92296 -23.29831 -21.33245 -19.99347 -19.07603 -18.80517 -18.65573 -17.44286 -17.11855 -16.97707 -16.63215 -16.03041 -15.92142 -15.53911 -15.28744 -15.04034 -14.57817 -14.45206 -14.34459 -14.10457 -13.92258 -13.90737 -13.76419 -13.49605 -13.28959 -13.12763 -13.02367 -12.79885 -12.68381 -12.24791 -12.21434 -12.02948 -11.93735 -11.84185 -11.48772 -11.36232 -11.28562 -10.87952 -10.62161 -10.09810 -10.01570 -8.89925 -8.23028 -5.60290 -0.82778 -0.15114 0.32947 1.19631 1.34049 1.43778 1.93174 1.95397 2.06217 2.36008 2.45484 3.03195 3.06887 3.21349 3.42377 3.72017 3.80453 3.91540 3.96519 4.06649 4.13406 4.22547 4.34150 4.37357 4.50192 4.52927 4.70209 4.75072 4.78602 4.91269 4.97896 4.98305 4.98802 5.09633 5.11919 5.19025 5.25241 5.32133 5.60038 5.73032 5.88896 5.92276 6.17151 6.84841 6.95010 7.57020 7.99136 8.95698 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.017241 B = 0.003578 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.613999 B = 7824.453476 C = 8202.533389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.210 4.210 3 C 0.236 3.764 4 N -0.602 5.602 5 C -0.242 4.242 6 H 0.058 0.942 7 C 0.007 3.993 8 N -0.934 5.934 9 Si 0.908 3.092 10 H -0.276 1.276 11 H -0.313 1.313 12 H -0.270 1.270 13 C 0.144 3.856 14 C -0.066 4.066 15 H 0.098 0.902 16 C -0.117 4.117 17 C -0.023 4.023 18 C -0.138 4.138 19 C -0.025 4.025 20 C -0.672 4.672 21 S 2.510 3.490 22 C -0.623 4.623 23 O -0.973 6.973 24 O -0.982 6.982 25 C -0.033 4.033 26 C -0.158 4.158 27 H 0.234 0.766 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.261 0.739 31 H 0.048 0.952 32 H 0.034 0.966 33 H 0.026 0.974 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.157 0.843 37 H 0.166 0.834 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.412 -19.097 -2.006 21.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.212 4.212 3 C 0.112 3.888 4 N -0.322 5.322 5 C -0.372 4.372 6 H 0.076 0.924 7 C -0.191 4.191 8 N -0.577 5.577 9 Si 0.739 3.261 10 H -0.203 1.203 11 H -0.242 1.242 12 H -0.195 1.195 13 C 0.019 3.981 14 C -0.086 4.086 15 H 0.116 0.884 16 C -0.175 4.175 17 C -0.023 4.023 18 C -0.157 4.157 19 C -0.044 4.044 20 C -0.757 4.757 21 S 2.694 3.306 22 C -0.777 4.777 23 O -0.970 6.970 24 O -0.980 6.980 25 C -0.052 4.052 26 C -0.177 4.177 27 H 0.251 0.749 28 H 0.102 0.898 29 H 0.118 0.882 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.045 0.955 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.174 0.826 37 H 0.183 0.817 38 H 0.175 0.825 39 H 0.173 0.827 40 H 0.167 0.833 41 H 0.164 0.836 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.794 -19.602 -1.742 21.555 hybrid contribution -0.952 1.107 0.860 1.694 sum 7.842 -18.495 -0.882 20.108 Atomic orbital electron populations 1.25578 0.96939 1.02715 1.01418 1.25524 0.97185 0.98999 0.99502 1.18410 0.81547 1.02348 0.86525 1.44263 1.74187 1.01789 1.11979 1.18597 1.33774 0.90439 0.94380 0.92422 1.25751 0.98516 0.96846 0.98022 1.69923 1.42675 1.35045 1.10080 0.86427 0.82473 0.78734 0.78445 1.20308 1.24202 1.19493 1.21246 0.94260 0.87640 0.95001 1.20766 0.96822 0.90692 1.00322 0.88362 1.21547 0.97303 0.99032 0.99583 1.20449 0.92360 0.95840 0.93693 1.21491 1.01025 0.91648 1.01503 1.21243 0.92329 0.98590 0.92189 1.30650 1.18470 1.20507 1.06116 1.04743 0.79607 0.72917 0.73368 1.30017 1.19182 1.13918 1.14550 1.93529 1.85675 1.58280 1.59509 1.93533 1.66911 1.86320 1.51209 1.21022 0.92476 0.91071 1.00601 1.21265 1.02824 0.98272 0.95330 0.74931 0.89820 0.88228 0.92939 0.93357 0.94815 0.95510 0.92427 0.92056 0.82575 0.81674 0.82517 0.82674 0.83296 0.83598 0.87314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -8.79 19.25 74.32 1.43 -7.36 16 2 C -0.21 -8.11 13.68 31.13 0.43 -7.68 16 3 C 0.24 8.59 6.14 84.58 0.52 9.11 16 4 N -0.60 -26.10 1.90 -712.54 -1.35 -27.46 16 5 C -0.24 -12.66 7.84 84.03 0.66 -12.00 16 6 H 0.06 3.29 8.06 -2.91 -0.02 3.27 16 7 C 0.01 0.36 5.30 84.86 0.45 0.81 16 8 N -0.93 -55.53 13.97 21.65 0.30 -55.23 16 9 Si 0.91 46.09 25.07 68.60 1.72 47.81 16 10 H -0.28 -13.38 6.69 99.48 0.67 -12.71 16 11 H -0.31 -16.37 7.11 99.48 0.71 -15.66 16 12 H -0.27 -13.77 7.11 99.48 0.71 -13.06 16 13 C 0.14 5.75 3.75 86.38 0.32 6.07 16 14 C -0.07 -2.15 2.77 -11.54 -0.03 -2.18 16 15 H 0.10 2.77 7.88 -2.39 -0.02 2.75 16 16 C -0.12 -4.29 8.56 71.98 0.62 -3.67 16 17 C -0.02 -0.66 4.78 -19.87 -0.09 -0.76 16 18 C -0.14 -3.16 9.67 22.27 0.22 -2.94 16 19 C -0.03 -0.51 9.47 22.27 0.21 -0.30 16 20 C -0.67 -14.65 5.66 22.27 0.13 -14.52 16 21 S 2.51 43.37 5.80 -56.49 -0.33 43.04 16 22 C -0.62 -3.69 10.79 113.37 1.22 -2.47 16 23 O -0.97 -22.25 17.13 -127.65 -2.19 -24.43 16 24 O -0.98 -24.95 17.12 -127.65 -2.19 -27.14 16 25 C -0.03 -0.87 9.47 22.27 0.21 -0.65 16 26 C -0.16 -4.93 8.76 22.27 0.20 -4.74 16 27 H 0.23 6.29 7.80 -4.42 -0.03 6.25 16 28 H 0.08 2.95 8.03 -2.39 -0.02 2.93 16 29 H 0.10 2.90 8.08 -2.38 -0.02 2.88 16 30 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 31 H 0.05 1.84 8.07 -2.39 -0.02 1.82 16 32 H 0.03 1.54 2.80 -2.39 -0.01 1.53 16 33 H 0.03 1.07 7.39 -2.38 -0.02 1.05 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.06 2.61 6.35 -2.39 -0.02 2.60 16 36 H 0.16 2.69 7.95 -2.91 -0.02 2.67 16 37 H 0.17 2.42 7.57 -2.91 -0.02 2.40 16 38 H 0.16 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.16 0.30 8.14 -2.39 -0.02 0.29 16 40 H 0.15 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.15 3.41 7.56 -2.91 -0.02 3.39 16 42 H 0.11 3.84 7.16 -2.91 -0.02 3.82 16 Total: -1.00 -77.05 363.37 3.42 -73.63 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.97 Total: 13.05 kcal Atomic # 6 Polarization: -49.76 SS G_CDS: 6.48 Total: -43.28 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -1.05 Total: -82.68 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -4.37 Total: -51.57 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.72 Total: 47.81 kcal Atomic # 16 Polarization: 43.37 SS G_CDS: -0.33 Total: 43.04 kcal Total: -77.05 3.42 -73.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333871907.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.255 kcal (2) G-P(sol) polarization free energy of solvation -77.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds