Wall clock time and date at job start Sat Apr 11 2020 00:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47529 * 2 1 4 4 C 1.50701 * 109.47408 * 120.00669 * 2 1 3 5 5 H 1.07991 * 120.00049 * 119.99903 * 4 2 1 6 6 C 1.37877 * 119.99351 * 299.99444 * 4 2 1 7 7 N 1.31512 * 120.00428 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99817 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47229 * 59.99807 * 8 6 4 10 10 H 1.48495 * 109.47317 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47173 * 300.00155 * 8 6 4 12 12 O 1.45207 * 109.46821 * 240.00326 * 2 1 3 13 13 C 1.34228 * 117.00248 * 89.99994 * 12 2 1 14 14 O 1.20831 * 119.99899 * 0.02562 * 13 12 2 15 15 C 1.50690 * 120.00297 * 180.02562 * 13 12 2 16 16 H 1.09008 * 110.43812 * 61.08465 * 15 13 12 17 17 C 1.54757 * 110.63759 * 183.63761 * 15 13 12 18 18 C 1.54475 * 101.70672 * 143.46854 * 17 15 13 19 19 N 1.46761 * 105.54934 * 334.68356 * 18 17 15 20 20 C 1.40037 * 124.34939 * 196.94976 * 19 18 17 21 21 C 1.38851 * 120.04194 * 173.93591 * 20 19 18 22 22 C 1.38119 * 119.95142 * 179.76924 * 21 20 19 23 23 C 1.38470 * 120.04316 * 0.50703 * 22 21 20 24 24 F 1.35102 * 119.95368 * 179.76512 * 23 22 21 25 25 C 1.38473 * 120.09109 * 359.75165 * 23 22 21 26 26 C 1.38106 * 120.04603 * 359.97438 * 25 23 22 27 27 C 1.34415 * 111.30382 * 16.97139 * 19 18 17 28 28 O 1.21286 * 124.94627 * 179.60830 * 27 19 18 29 29 H 1.09000 * 109.47028 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46316 * 299.99627 * 1 2 3 31 31 H 1.08999 * 109.47157 * 59.99422 * 1 2 3 32 32 H 0.96997 * 120.00071 * 179.97438 * 7 6 4 33 33 H 1.08998 * 110.94693 * 25.39227 * 17 15 13 34 34 H 1.09001 * 111.04580 * 261.59004 * 17 15 13 35 35 H 1.09003 * 110.24805 * 215.64132 * 18 17 15 36 36 H 1.08996 * 110.24904 * 93.72715 * 18 17 15 37 37 H 1.07994 * 120.02652 * 0.03011 * 21 20 19 38 38 H 1.07998 * 119.97390 * 180.23195 * 22 21 20 39 39 H 1.08007 * 119.97540 * 179.97438 * 25 23 22 40 40 H 1.07998 * 120.02458 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4826 7 7 0.9438 0.8301 2.6034 8 14 2.3227 -1.1197 4.0078 9 1 3.8076 -1.1192 4.0075 10 1 1.8272 -0.4201 5.2203 11 1 1.8282 -2.5200 4.0080 12 8 2.0140 -0.6845 -1.1857 13 6 2.2171 0.0640 -2.2812 14 8 1.9982 1.2520 -2.2504 15 6 2.7181 -0.5771 -3.5496 16 1 2.0100 -1.3270 -3.9024 17 6 2.9611 0.4919 -4.6419 18 6 4.2186 -0.0618 -5.3480 19 7 4.9005 -0.8889 -4.3456 20 6 6.2349 -1.3034 -4.4386 21 6 6.8285 -1.9784 -3.3803 22 6 8.1433 -2.3905 -3.4759 23 6 8.8725 -2.1218 -4.6219 24 9 10.1599 -2.5216 -4.7116 25 6 8.2839 -1.4440 -5.6763 26 6 6.9678 -1.0352 -5.5870 27 6 4.0797 -1.1978 -3.3270 28 8 4.3860 -1.8754 -2.3689 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 0.7092 1.1613 3.4844 33 1 3.1613 1.4661 -4.1960 34 1 2.1185 0.5457 -5.3313 35 1 4.8649 0.7570 -5.6643 36 1 3.9324 -0.6691 -6.2066 37 1 6.2613 -2.1847 -2.4847 38 1 8.6042 -2.9189 -2.6544 39 1 8.8546 -1.2350 -6.5692 40 1 6.5090 -0.5069 -6.4097 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342567496.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:51 Heat of formation + Delta-G solvation = -128.589209 kcal Electronic energy + Delta-G solvation = -26673.672562 eV Core-core repulsion = 22561.427345 eV Total energy + Delta-G solvation = -4112.245218 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.121 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.99016 -41.48963 -39.58388 -38.46334 -36.83001 -35.76787 -33.35890 -33.10985 -31.39478 -29.79883 -28.93555 -28.26760 -25.31305 -24.10627 -23.47237 -22.62157 -21.17138 -20.47924 -19.41028 -18.00899 -17.64949 -17.48987 -16.97355 -16.56413 -16.23780 -15.72698 -15.58618 -15.08183 -14.86958 -14.66502 -14.37865 -14.12176 -13.81327 -13.64585 -13.43629 -13.19207 -13.09274 -12.69949 -12.52619 -12.21276 -12.16170 -11.86923 -11.43551 -11.30264 -11.20661 -11.03375 -10.84161 -10.39655 -10.30099 -10.26714 -9.93639 -9.69808 -9.56046 -9.36892 -8.91401 -8.47497 -8.07233 -6.16530 -4.22465 0.84911 0.99480 2.20075 2.44721 2.85465 3.29854 3.31735 3.33499 3.42124 3.49683 3.94540 4.11144 4.12837 4.35397 4.52368 4.58516 4.60855 4.70354 4.93433 5.07116 5.08661 5.11879 5.16747 5.32192 5.53865 5.61451 5.66609 5.83095 5.85572 5.88527 6.10424 6.26354 6.59355 6.73633 6.78119 6.85070 6.87098 7.10107 7.58902 7.70110 7.84986 7.90076 8.13755 8.54429 8.88726 9.42593 10.91084 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.014561 B = 0.003389 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.516410 B = 8259.455037 C = 9890.056678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.046 0.954 4 C -0.518 4.518 5 H 0.071 0.929 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.912 3.088 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.337 6.337 13 C 0.469 3.531 14 O -0.512 6.512 15 C -0.122 4.122 16 H 0.146 0.854 17 C -0.118 4.118 18 C 0.096 3.904 19 N -0.562 5.562 20 C 0.165 3.835 21 C -0.128 4.128 22 C -0.120 4.120 23 C 0.066 3.934 24 F -0.143 7.143 25 C -0.126 4.126 26 C -0.133 4.133 27 C 0.527 3.473 28 O -0.466 6.466 29 H 0.038 0.962 30 H 0.100 0.900 31 H 0.016 0.984 32 H 0.266 0.734 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.167 0.833 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.108 -2.814 -20.248 22.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.163 3.837 3 H 0.064 0.936 4 C -0.556 4.556 5 H 0.089 0.911 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.739 3.261 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.199 1.199 12 O -0.251 6.251 13 C 0.311 3.689 14 O -0.402 6.402 15 C -0.144 4.144 16 H 0.163 0.837 17 C -0.156 4.156 18 C -0.026 4.026 19 N -0.287 5.287 20 C 0.070 3.930 21 C -0.148 4.148 22 C -0.139 4.139 23 C 0.046 3.954 24 F -0.122 7.122 25 C -0.145 4.145 26 C -0.154 4.154 27 C 0.314 3.686 28 O -0.337 6.337 29 H 0.057 0.943 30 H 0.119 0.881 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.184 0.816 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.111 -2.738 -19.471 21.671 hybrid contribution 0.398 -0.335 0.706 0.877 sum 9.509 -3.073 -18.765 21.260 Atomic orbital electron populations 1.22177 0.97415 1.00224 1.01461 1.20705 0.91390 0.93841 0.77736 0.93617 1.21012 1.32333 1.13548 0.88736 0.91119 1.24875 0.94937 0.95106 0.99038 1.69882 1.36249 1.22615 1.24260 0.86320 0.79310 0.79565 0.80891 1.19945 1.21055 1.19887 1.86573 1.74745 1.43027 1.20792 1.22269 0.75386 0.85649 0.85638 1.90616 1.48974 1.16352 1.84244 1.21823 0.96994 1.00817 0.94763 0.83665 1.22704 0.97487 0.99287 0.96095 1.22352 0.94214 0.94805 0.91193 1.45782 1.09155 1.50576 1.23141 1.17804 0.82843 0.97318 0.94989 1.21618 0.94809 0.98480 0.99924 1.21099 0.94278 1.01230 0.97322 1.17683 0.79544 1.01816 0.96398 1.91485 1.35031 1.89047 1.96642 1.20867 0.95265 0.99740 0.98615 1.20578 0.93940 1.03712 0.97130 1.20420 0.86211 0.80297 0.81710 1.90743 1.77791 1.35982 1.29178 0.94309 0.88114 0.96520 0.92378 0.87589 0.87677 0.89025 0.89640 0.81594 0.84206 0.84413 0.84628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 9.33 37.16 0.35 -3.57 16 2 C 0.22 5.86 2.56 -27.88 -0.07 5.79 16 3 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 4 C -0.52 -14.97 8.90 -34.44 -0.31 -15.28 16 5 H 0.07 2.06 7.81 -52.49 -0.41 1.65 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.59 11.32 55.43 0.63 -24.96 16 8 Si 0.91 21.65 29.54 -169.99 -5.02 16.63 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 O -0.34 -8.17 9.44 -41.48 -0.39 -8.56 16 13 C 0.47 9.48 7.23 36.00 0.26 9.74 16 14 O -0.51 -11.30 14.76 -18.75 -0.28 -11.58 16 15 C -0.12 -1.68 3.43 -91.71 -0.31 -1.99 16 16 H 0.15 1.59 8.14 -51.92 -0.42 1.16 16 17 C -0.12 -1.11 6.47 -25.03 -0.16 -1.27 16 18 C 0.10 0.72 6.26 -3.13 -0.02 0.70 16 19 N -0.56 -6.62 3.14 -112.25 -0.35 -6.97 16 20 C 0.16 1.95 6.60 -83.66 -0.55 1.39 16 21 C -0.13 -1.70 9.28 -39.40 -0.37 -2.06 16 22 C -0.12 -1.39 10.02 -39.54 -0.40 -1.79 16 23 C 0.07 0.72 7.30 -39.41 -0.29 0.43 16 24 F -0.14 -1.64 17.27 2.25 0.04 -1.60 16 25 C -0.13 -1.13 10.02 -39.54 -0.40 -1.53 16 26 C -0.13 -1.19 9.40 -39.40 -0.37 -1.56 16 27 C 0.53 8.10 7.34 -10.86 -0.08 8.02 16 28 O -0.47 -9.03 14.30 3.79 0.05 -8.98 16 29 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.10 2.72 6.07 -51.93 -0.32 2.40 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.11 1.20 7.07 -51.93 -0.37 0.83 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.51 7.70 -51.93 -0.40 0.11 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.17 2.59 5.27 -52.49 -0.28 2.32 16 38 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 39 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 40 H 0.14 0.80 7.01 -52.49 -0.37 0.44 16 LS Contribution 343.74 15.07 5.18 5.18 Total: -1.00 -33.91 343.74 -7.55 -41.47 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -4.60 Total: 0.69 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -2.81 Total: -1.32 kcal Atomic # 7 Polarization: -32.21 SS G_CDS: 0.27 Total: -31.93 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.61 Total: -29.11 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.91 -7.55 -41.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342567496.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.122 kcal (2) G-P(sol) polarization free energy of solvation -33.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds