Wall clock time and date at job start Sat Apr 11 2020 00:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47529 * 2 1 4 4 C 1.50701 * 109.47408 * 120.00669 * 2 1 3 5 5 H 1.07991 * 120.00049 * 119.99903 * 4 2 1 6 6 C 1.37877 * 119.99351 * 299.99444 * 4 2 1 7 7 N 1.31512 * 120.00428 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99817 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47229 * 59.99807 * 8 6 4 10 10 H 1.48495 * 109.47317 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47173 * 300.00155 * 8 6 4 12 12 O 1.45207 * 109.46821 * 240.00326 * 2 1 3 13 13 C 1.34228 * 117.00248 * 89.99994 * 12 2 1 14 14 O 1.20831 * 119.99899 * 0.02562 * 13 12 2 15 15 C 1.50690 * 120.00297 * 180.02562 * 13 12 2 16 16 H 1.09008 * 110.43812 * 61.08465 * 15 13 12 17 17 C 1.54757 * 110.63759 * 183.63761 * 15 13 12 18 18 C 1.54475 * 101.70672 * 143.46854 * 17 15 13 19 19 N 1.46761 * 105.54934 * 334.68356 * 18 17 15 20 20 C 1.40037 * 124.34939 * 196.94976 * 19 18 17 21 21 C 1.38851 * 120.04194 * 173.93591 * 20 19 18 22 22 C 1.38119 * 119.95142 * 179.76924 * 21 20 19 23 23 C 1.38470 * 120.04316 * 0.50703 * 22 21 20 24 24 F 1.35102 * 119.95368 * 179.76512 * 23 22 21 25 25 C 1.38473 * 120.09109 * 359.75165 * 23 22 21 26 26 C 1.38106 * 120.04603 * 359.97438 * 25 23 22 27 27 C 1.34415 * 111.30382 * 16.97139 * 19 18 17 28 28 O 1.21286 * 124.94627 * 179.60830 * 27 19 18 29 29 H 1.09000 * 109.47028 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46316 * 299.99627 * 1 2 3 31 31 H 1.08999 * 109.47157 * 59.99422 * 1 2 3 32 32 H 0.96997 * 120.00071 * 179.97438 * 7 6 4 33 33 H 1.08998 * 110.94693 * 25.39227 * 17 15 13 34 34 H 1.09001 * 111.04580 * 261.59004 * 17 15 13 35 35 H 1.09003 * 110.24805 * 215.64132 * 18 17 15 36 36 H 1.08996 * 110.24904 * 93.72715 * 18 17 15 37 37 H 1.07994 * 120.02652 * 0.03011 * 21 20 19 38 38 H 1.07998 * 119.97390 * 180.23195 * 22 21 20 39 39 H 1.08007 * 119.97540 * 179.97438 * 25 23 22 40 40 H 1.07998 * 120.02458 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4826 7 7 0.9438 0.8301 2.6034 8 14 2.3227 -1.1197 4.0078 9 1 3.8076 -1.1192 4.0075 10 1 1.8272 -0.4201 5.2203 11 1 1.8282 -2.5200 4.0080 12 8 2.0140 -0.6845 -1.1857 13 6 2.2171 0.0640 -2.2812 14 8 1.9982 1.2520 -2.2504 15 6 2.7181 -0.5771 -3.5496 16 1 2.0100 -1.3270 -3.9024 17 6 2.9611 0.4919 -4.6419 18 6 4.2186 -0.0618 -5.3480 19 7 4.9005 -0.8889 -4.3456 20 6 6.2349 -1.3034 -4.4386 21 6 6.8285 -1.9784 -3.3803 22 6 8.1433 -2.3905 -3.4759 23 6 8.8725 -2.1218 -4.6219 24 9 10.1599 -2.5216 -4.7116 25 6 8.2839 -1.4440 -5.6763 26 6 6.9678 -1.0352 -5.5870 27 6 4.0797 -1.1978 -3.3270 28 8 4.3860 -1.8754 -2.3689 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 0.7092 1.1613 3.4844 33 1 3.1613 1.4661 -4.1960 34 1 2.1185 0.5457 -5.3313 35 1 4.8649 0.7570 -5.6643 36 1 3.9324 -0.6691 -6.2066 37 1 6.2613 -2.1847 -2.4847 38 1 8.6042 -2.9189 -2.6544 39 1 8.8546 -1.2350 -6.5692 40 1 6.5090 -0.5069 -6.4097 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342567496.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:51 Heat of formation + Delta-G solvation = -148.965497 kcal Electronic energy + Delta-G solvation = -26674.556145 eV Core-core repulsion = 22561.427345 eV Total energy + Delta-G solvation = -4113.128800 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.121 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.85795 -42.56197 -41.11571 -39.48037 -38.08914 -37.41469 -35.38108 -34.18936 -32.21435 -31.76885 -29.94008 -29.21820 -27.48669 -25.23174 -24.35227 -23.85129 -22.54939 -21.70369 -20.84162 -19.06832 -18.84319 -18.60072 -18.47812 -18.17625 -17.49188 -17.04143 -16.70476 -16.52525 -16.29483 -15.88485 -15.53585 -15.11502 -14.91324 -14.74755 -14.66016 -14.31592 -14.14691 -14.03443 -13.88090 -13.58920 -13.34426 -13.27293 -13.07817 -12.89306 -12.78583 -12.42736 -12.29941 -12.20034 -12.13134 -11.63766 -11.55810 -11.10425 -11.03173 -10.87643 -10.63224 -10.18064 -8.95416 -8.32923 -6.48965 -0.04901 0.18038 0.94089 1.30668 1.37115 1.40826 1.48998 1.64548 1.98136 2.37259 2.59552 2.96175 2.98382 3.20971 3.29780 3.70457 3.77818 3.81819 3.85802 4.05603 4.17849 4.23161 4.38344 4.46486 4.49265 4.66871 4.74877 4.79692 4.89966 4.93286 5.03492 5.07650 5.10105 5.12934 5.19180 5.40058 5.45070 5.60329 5.82138 5.86999 5.92713 6.03811 6.53651 6.78292 6.85356 7.22093 8.74520 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.014561 B = 0.003389 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.516410 B = 8259.455037 C = 9890.056678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.218 3.782 3 H 0.007 0.993 4 C -0.551 4.551 5 H 0.057 0.943 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.978 3.022 9 H -0.274 1.274 10 H -0.270 1.270 11 H -0.264 1.264 12 O -0.355 6.355 13 C 0.459 3.541 14 O -0.535 6.535 15 C -0.115 4.115 16 H 0.178 0.822 17 C -0.109 4.109 18 C 0.094 3.906 19 N -0.554 5.554 20 C 0.147 3.853 21 C -0.157 4.157 22 C -0.131 4.131 23 C 0.056 3.944 24 F -0.147 7.147 25 C -0.114 4.114 26 C -0.111 4.111 27 C 0.513 3.487 28 O -0.524 6.524 29 H 0.045 0.955 30 H 0.082 0.918 31 H 0.031 0.969 32 H 0.273 0.727 33 H 0.083 0.917 34 H 0.146 0.854 35 H 0.121 0.879 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.140 0.860 39 H 0.173 0.827 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.628 -2.626 -23.567 25.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.589 4.589 5 H 0.075 0.925 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.801 3.199 9 H -0.199 1.199 10 H -0.194 1.194 11 H -0.189 1.189 12 O -0.270 6.270 13 C 0.303 3.697 14 O -0.426 6.426 15 C -0.137 4.137 16 H 0.195 0.805 17 C -0.146 4.146 18 C -0.025 4.025 19 N -0.278 5.278 20 C 0.053 3.947 21 C -0.177 4.177 22 C -0.150 4.150 23 C 0.036 3.964 24 F -0.126 7.126 25 C -0.133 4.133 26 C -0.131 4.131 27 C 0.301 3.699 28 O -0.400 6.400 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.164 0.836 35 H 0.139 0.861 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.158 0.842 39 H 0.191 0.809 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 9.639 -2.521 -22.859 24.935 hybrid contribution 0.311 -0.338 1.641 1.704 sum 9.950 -2.859 -21.218 23.609 Atomic orbital electron populations 1.21971 0.96088 1.00509 1.01240 1.20362 0.92355 0.91772 0.78993 0.97495 1.21239 1.33429 1.13838 0.90394 0.92484 1.25755 0.94678 0.95684 1.01859 1.69982 1.36421 1.23394 1.25352 0.85308 0.78607 0.78826 0.77134 1.19890 1.19445 1.18887 1.86566 1.75449 1.43607 1.21392 1.23501 0.74376 0.85605 0.86256 1.90590 1.49853 1.17433 1.84750 1.22051 0.96644 1.02813 0.92204 0.80484 1.22845 1.00218 0.96533 0.95012 1.22818 0.93195 0.95801 0.90715 1.45863 1.08927 1.50028 1.22942 1.18021 0.83103 0.97881 0.95721 1.21431 0.95502 1.00752 1.00002 1.21108 0.93988 1.01711 0.98240 1.17871 0.79396 1.02315 0.96780 1.91475 1.35288 1.89196 1.96654 1.21290 0.95423 0.97789 0.98785 1.20984 0.93368 1.02123 0.96638 1.20776 0.87261 0.79968 0.81871 1.90728 1.78894 1.38699 1.31649 0.93616 0.89948 0.94970 0.91820 0.89832 0.83565 0.86112 0.85206 0.85035 0.84219 0.80926 0.80208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.31 9.33 71.98 0.67 -6.64 16 2 C 0.22 12.49 2.56 29.85 0.08 12.57 16 3 H 0.01 0.46 7.16 -2.39 -0.02 0.44 16 4 C -0.55 -33.35 8.90 25.60 0.23 -33.12 16 5 H 0.06 3.51 7.81 -2.92 -0.02 3.48 16 6 C 0.02 1.16 5.30 84.65 0.45 1.61 16 7 N -0.91 -53.63 11.32 21.45 0.24 -53.38 16 8 Si 0.98 45.09 29.54 68.60 2.03 47.12 16 9 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 11 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 12 O -0.35 -18.11 9.44 -49.27 -0.46 -18.57 16 13 C 0.46 19.10 7.23 71.23 0.52 19.62 16 14 O -0.54 -24.39 14.76 21.95 0.32 -24.07 16 15 C -0.12 -3.07 3.43 -11.50 -0.04 -3.11 16 16 H 0.18 3.49 8.14 -2.38 -0.02 3.47 16 17 C -0.11 -1.69 6.47 31.69 0.20 -1.48 16 18 C 0.09 0.94 6.26 86.83 0.54 1.49 16 19 N -0.55 -11.99 3.14 -627.64 -1.97 -13.96 16 20 C 0.15 3.24 6.60 38.12 0.25 3.49 16 21 C -0.16 -4.36 9.28 22.39 0.21 -4.15 16 22 C -0.13 -3.15 10.02 22.30 0.22 -2.93 16 23 C 0.06 1.15 7.30 22.38 0.16 1.32 16 24 F -0.15 -3.18 17.27 44.97 0.78 -2.40 16 25 C -0.11 -1.62 10.02 22.29 0.22 -1.40 16 26 C -0.11 -1.50 9.40 22.38 0.21 -1.29 16 27 C 0.51 16.00 7.34 87.90 0.65 16.65 16 28 O -0.52 -21.89 14.30 -1.36 -0.02 -21.91 16 29 H 0.04 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.08 4.59 6.07 -2.39 -0.01 4.57 16 31 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 33 H 0.08 1.73 7.07 -2.39 -0.02 1.72 16 34 H 0.15 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.12 0.61 7.70 -2.39 -0.02 0.59 16 36 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.13 4.64 5.27 -2.91 -0.02 4.62 16 38 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 39 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 40 H 0.18 0.84 7.01 -2.91 -0.02 0.82 16 Total: -1.00 -81.67 343.74 6.57 -75.10 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 1.08 Total: 9.45 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 4.57 Total: 2.63 kcal Atomic # 7 Polarization: -65.62 SS G_CDS: -1.73 Total: -67.34 kcal Atomic # 8 Polarization: -64.39 SS G_CDS: -0.16 Total: -64.55 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.78 Total: -2.40 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -81.67 6.57 -75.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342567496.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.862 kcal (2) G-P(sol) polarization free energy of solvation -81.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds