Wall clock time and date at job start Sat Apr 11 2020 00:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47361 * 2 1 4 4 C 1.50694 * 109.47120 * 239.99422 * 2 1 3 5 5 H 1.08013 * 120.00056 * 240.00322 * 4 2 1 6 6 C 1.37871 * 120.00232 * 60.00207 * 4 2 1 7 7 N 1.31515 * 119.99720 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00385 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47436 * 59.99616 * 8 6 4 10 10 H 1.48499 * 109.47271 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.46716 * 299.99750 * 8 6 4 12 12 O 1.45207 * 109.46970 * 119.99365 * 2 1 3 13 13 C 1.34228 * 117.00248 * 269.99985 * 12 2 1 14 14 O 1.20831 * 119.99899 * 0.02562 * 13 12 2 15 15 C 1.50690 * 120.00297 * 180.02562 * 13 12 2 16 16 H 1.09008 * 110.43812 * 61.08465 * 15 13 12 17 17 C 1.54757 * 110.63759 * 183.63761 * 15 13 12 18 18 C 1.54475 * 101.70672 * 143.46854 * 17 15 13 19 19 N 1.46761 * 105.54934 * 334.68356 * 18 17 15 20 20 C 1.40037 * 124.34939 * 196.94976 * 19 18 17 21 21 C 1.38851 * 120.04194 * 173.93591 * 20 19 18 22 22 C 1.38119 * 119.95142 * 179.76924 * 21 20 19 23 23 C 1.38470 * 120.04316 * 0.50703 * 22 21 20 24 24 F 1.35102 * 119.95368 * 179.76512 * 23 22 21 25 25 C 1.38473 * 120.09109 * 359.75165 * 23 22 21 26 26 C 1.38106 * 120.04603 * 359.97438 * 25 23 22 27 27 C 1.34415 * 111.30382 * 16.97139 * 19 18 17 28 28 O 1.21286 * 124.94627 * 179.60830 * 27 19 18 29 29 H 1.09001 * 109.46999 * 300.00711 * 1 2 3 30 30 H 1.08995 * 109.47272 * 60.00569 * 1 2 3 31 31 H 1.08999 * 109.47479 * 180.02562 * 1 2 3 32 32 H 0.97009 * 120.00123 * 179.97438 * 7 6 4 33 33 H 1.08998 * 110.94693 * 25.39227 * 17 15 13 34 34 H 1.09001 * 111.04580 * 261.59004 * 17 15 13 35 35 H 1.09003 * 110.24805 * 215.64132 * 18 17 15 36 36 H 1.08996 * 110.24904 * 93.72715 * 18 17 15 37 37 H 1.07994 * 120.02652 * 0.03011 * 21 20 19 38 38 H 1.07998 * 119.97390 * 180.23195 * 22 21 20 39 39 H 1.08007 * 119.97540 * 179.97438 * 25 23 22 40 40 H 1.07998 * 120.02458 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4826 7 7 0.9428 0.8294 -2.6034 8 14 2.3213 -1.1207 -4.0078 9 1 1.8259 -2.5206 -4.0075 10 1 1.8270 -0.4204 -5.2203 11 1 3.8064 -1.1213 -4.0079 12 8 2.0140 -0.6844 1.1857 13 6 2.2171 0.0642 2.2812 14 8 1.9973 1.2519 2.2506 15 6 2.7192 -0.5767 3.5492 16 1 3.6976 -1.0286 3.3858 17 6 2.7888 0.4617 4.6946 18 6 2.3690 -0.3884 5.9142 19 7 1.5529 -1.4802 5.3706 20 6 0.6958 -2.2820 6.1346 21 6 -0.1298 -3.2079 5.5108 22 6 -0.9710 -4.0010 6.2665 23 6 -0.9988 -3.8660 7.6443 24 9 -1.8257 -4.6395 8.3813 25 6 -0.1801 -2.9395 8.2678 26 6 0.6665 -2.1484 7.5163 27 6 1.7340 -1.6122 4.0453 28 8 1.1871 -2.4405 3.3484 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 0.7088 1.1610 -3.4845 33 1 2.0843 1.2760 4.5257 34 1 3.8025 0.8436 4.8157 35 1 1.7812 0.2123 6.6084 36 1 3.2498 -0.7894 6.4157 37 1 -0.1113 -3.3107 4.4359 38 1 -1.6106 -4.7239 5.7820 39 1 -0.2036 -2.8354 9.3426 40 1 1.3052 -1.4262 8.0029 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342567519.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:59 Heat of formation + Delta-G solvation = -128.930698 kcal Electronic energy + Delta-G solvation = -26653.893613 eV Core-core repulsion = 22541.633588 eV Total energy + Delta-G solvation = -4112.260026 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.121 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.01534 -41.51234 -39.59018 -38.48497 -36.85448 -35.76847 -33.37045 -33.12586 -31.42354 -29.79900 -28.95020 -28.28163 -25.31623 -24.12374 -23.49240 -22.63474 -21.17640 -20.53037 -19.37083 -18.03590 -17.67503 -17.54497 -16.97418 -16.56882 -16.25553 -15.75084 -15.61607 -15.06609 -14.88609 -14.68822 -14.39564 -14.13298 -13.84487 -13.69355 -13.44015 -13.21182 -13.09186 -12.72087 -12.57308 -12.29819 -12.06747 -11.84730 -11.44470 -11.34369 -11.20990 -11.03828 -10.83705 -10.40127 -10.32385 -10.28058 -9.94511 -9.71436 -9.55313 -9.39767 -8.92544 -8.48865 -8.10028 -6.18064 -4.24799 0.82053 0.96615 2.18253 2.41714 2.84525 3.27231 3.30283 3.32048 3.39514 3.48570 3.93208 4.08598 4.11466 4.33366 4.50184 4.56685 4.58644 4.69737 4.90995 5.05159 5.06256 5.12067 5.15206 5.29719 5.54307 5.60784 5.64959 5.82095 5.83040 5.85871 6.06838 6.23478 6.61882 6.70838 6.75106 6.90068 6.91177 7.12191 7.57589 7.71703 7.81847 7.88714 8.12858 8.53925 8.85459 9.40276 10.89406 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.019719 B = 0.002951 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.598125 B = 9484.946487 C =10366.268064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.216 3.784 3 H 0.047 0.953 4 C -0.521 4.521 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.913 3.087 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.337 6.337 13 C 0.470 3.530 14 O -0.512 6.512 15 C -0.122 4.122 16 H 0.147 0.853 17 C -0.118 4.118 18 C 0.096 3.904 19 N -0.562 5.562 20 C 0.165 3.835 21 C -0.129 4.129 22 C -0.120 4.120 23 C 0.066 3.934 24 F -0.143 7.143 25 C -0.125 4.125 26 C -0.132 4.132 27 C 0.528 3.472 28 O -0.469 6.469 29 H 0.013 0.987 30 H 0.100 0.900 31 H 0.039 0.961 32 H 0.267 0.733 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.166 0.834 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.068 -4.018 22.408 22.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.559 4.559 5 H 0.087 0.913 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.740 3.260 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.200 1.200 12 O -0.251 6.251 13 C 0.311 3.689 14 O -0.402 6.402 15 C -0.144 4.144 16 H 0.164 0.836 17 C -0.156 4.156 18 C -0.026 4.026 19 N -0.286 5.286 20 C 0.070 3.930 21 C -0.149 4.149 22 C -0.139 4.139 23 C 0.046 3.954 24 F -0.122 7.122 25 C -0.145 4.145 26 C -0.153 4.153 27 C 0.315 3.685 28 O -0.340 6.340 29 H 0.033 0.967 30 H 0.118 0.882 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.184 0.816 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.581 -4.026 21.783 22.208 hybrid contribution 0.132 -0.398 -0.621 0.749 sum 1.713 -4.423 21.162 21.687 Atomic orbital electron populations 1.22146 0.97439 1.00323 1.01208 1.20700 0.91536 0.93739 0.77628 0.93541 1.20988 1.32572 1.13499 0.88812 0.91262 1.24882 0.94911 0.95102 0.99053 1.69891 1.36017 1.22595 1.24292 0.86313 0.79174 0.79614 0.80919 1.19876 1.21036 1.19979 1.86573 1.74734 1.42971 1.20862 1.22260 0.75245 0.85642 0.85770 1.90616 1.48592 1.16492 1.84488 1.21826 1.01824 0.97260 0.93524 0.83562 1.22706 1.05451 0.97283 0.90127 1.22362 0.95254 0.87509 0.97462 1.45786 1.41444 1.32985 1.08398 1.17806 0.91910 0.92802 0.90454 1.21606 0.94994 0.95119 1.03163 1.21095 1.00310 1.00822 0.91718 1.17684 0.93958 0.94319 0.89465 1.91486 1.70168 1.73511 1.77021 1.20873 0.96710 0.96151 1.00723 1.20584 1.01662 1.01944 0.91135 1.20426 0.82280 0.84679 0.81129 1.90727 1.48404 1.35837 1.59061 0.96750 0.88200 0.94228 0.92337 0.87608 0.87618 0.89013 0.89601 0.81643 0.84213 0.84393 0.84605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 9.33 37.16 0.35 -3.68 16 2 C 0.22 5.89 2.56 -27.89 -0.07 5.82 16 3 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 4 C -0.52 -14.84 8.90 -34.45 -0.31 -15.15 16 5 H 0.07 1.95 7.81 -52.48 -0.41 1.54 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.44 11.32 55.43 0.63 -24.81 16 8 Si 0.91 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 O -0.34 -8.18 9.44 -41.48 -0.39 -8.57 16 13 C 0.47 9.49 7.23 36.00 0.26 9.75 16 14 O -0.51 -11.30 14.76 -18.75 -0.28 -11.58 16 15 C -0.12 -1.68 3.43 -91.71 -0.31 -2.00 16 16 H 0.15 1.63 8.14 -51.92 -0.42 1.21 16 17 C -0.12 -1.11 6.47 -25.03 -0.16 -1.27 16 18 C 0.10 0.70 6.26 -3.13 -0.02 0.68 16 19 N -0.56 -6.47 3.14 -112.25 -0.35 -6.82 16 20 C 0.16 1.89 6.60 -83.66 -0.55 1.34 16 21 C -0.13 -1.65 9.28 -39.40 -0.37 -2.01 16 22 C -0.12 -1.34 10.02 -39.54 -0.40 -1.74 16 23 C 0.07 0.70 7.30 -39.41 -0.29 0.41 16 24 F -0.14 -1.59 17.27 2.25 0.04 -1.55 16 25 C -0.13 -1.10 10.02 -39.54 -0.40 -1.49 16 26 C -0.13 -1.15 9.40 -39.40 -0.37 -1.52 16 27 C 0.53 7.97 7.34 -10.86 -0.08 7.89 16 28 O -0.47 -8.86 14.30 3.79 0.05 -8.80 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.10 2.76 6.07 -51.93 -0.32 2.44 16 31 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.11 1.19 7.07 -51.93 -0.37 0.82 16 34 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.50 7.70 -51.93 -0.40 0.10 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.17 2.49 5.27 -52.49 -0.28 2.21 16 38 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 40 H 0.14 0.78 7.01 -52.49 -0.37 0.41 16 LS Contribution 343.74 15.07 5.18 5.18 Total: -1.00 -33.66 343.74 -7.55 -41.21 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -4.60 Total: 0.80 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -2.81 Total: -1.32 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: 0.27 Total: -31.63 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.61 Total: -28.96 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.66 -7.55 -41.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342567519.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.720 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds