Wall clock time and date at job start Sat Apr 11 2020 00:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47361 * 2 1 4 4 C 1.50694 * 109.47120 * 239.99422 * 2 1 3 5 5 H 1.08013 * 120.00056 * 240.00322 * 4 2 1 6 6 C 1.37871 * 120.00232 * 60.00207 * 4 2 1 7 7 N 1.31515 * 119.99720 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00385 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47436 * 59.99616 * 8 6 4 10 10 H 1.48499 * 109.47271 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.46716 * 299.99750 * 8 6 4 12 12 O 1.45207 * 109.46970 * 119.99365 * 2 1 3 13 13 C 1.34228 * 117.00248 * 269.99985 * 12 2 1 14 14 O 1.20831 * 119.99899 * 0.02562 * 13 12 2 15 15 C 1.50690 * 120.00297 * 180.02562 * 13 12 2 16 16 H 1.09008 * 110.43812 * 61.08465 * 15 13 12 17 17 C 1.54757 * 110.63759 * 183.63761 * 15 13 12 18 18 C 1.54475 * 101.70672 * 143.46854 * 17 15 13 19 19 N 1.46761 * 105.54934 * 334.68356 * 18 17 15 20 20 C 1.40037 * 124.34939 * 196.94976 * 19 18 17 21 21 C 1.38851 * 120.04194 * 173.93591 * 20 19 18 22 22 C 1.38119 * 119.95142 * 179.76924 * 21 20 19 23 23 C 1.38470 * 120.04316 * 0.50703 * 22 21 20 24 24 F 1.35102 * 119.95368 * 179.76512 * 23 22 21 25 25 C 1.38473 * 120.09109 * 359.75165 * 23 22 21 26 26 C 1.38106 * 120.04603 * 359.97438 * 25 23 22 27 27 C 1.34415 * 111.30382 * 16.97139 * 19 18 17 28 28 O 1.21286 * 124.94627 * 179.60830 * 27 19 18 29 29 H 1.09001 * 109.46999 * 300.00711 * 1 2 3 30 30 H 1.08995 * 109.47272 * 60.00569 * 1 2 3 31 31 H 1.08999 * 109.47479 * 180.02562 * 1 2 3 32 32 H 0.97009 * 120.00123 * 179.97438 * 7 6 4 33 33 H 1.08998 * 110.94693 * 25.39227 * 17 15 13 34 34 H 1.09001 * 111.04580 * 261.59004 * 17 15 13 35 35 H 1.09003 * 110.24805 * 215.64132 * 18 17 15 36 36 H 1.08996 * 110.24904 * 93.72715 * 18 17 15 37 37 H 1.07994 * 120.02652 * 0.03011 * 21 20 19 38 38 H 1.07998 * 119.97390 * 180.23195 * 22 21 20 39 39 H 1.08007 * 119.97540 * 179.97438 * 25 23 22 40 40 H 1.07998 * 120.02458 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4826 7 7 0.9428 0.8294 -2.6034 8 14 2.3213 -1.1207 -4.0078 9 1 1.8259 -2.5206 -4.0075 10 1 1.8270 -0.4204 -5.2203 11 1 3.8064 -1.1213 -4.0079 12 8 2.0140 -0.6844 1.1857 13 6 2.2171 0.0642 2.2812 14 8 1.9973 1.2519 2.2506 15 6 2.7192 -0.5767 3.5492 16 1 3.6976 -1.0286 3.3858 17 6 2.7888 0.4617 4.6946 18 6 2.3690 -0.3884 5.9142 19 7 1.5529 -1.4802 5.3706 20 6 0.6958 -2.2820 6.1346 21 6 -0.1298 -3.2079 5.5108 22 6 -0.9710 -4.0010 6.2665 23 6 -0.9988 -3.8660 7.6443 24 9 -1.8257 -4.6395 8.3813 25 6 -0.1801 -2.9395 8.2678 26 6 0.6665 -2.1484 7.5163 27 6 1.7340 -1.6122 4.0453 28 8 1.1871 -2.4405 3.3484 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 0.7088 1.1610 -3.4845 33 1 2.0843 1.2760 4.5257 34 1 3.8025 0.8436 4.8157 35 1 1.7812 0.2123 6.6084 36 1 3.2498 -0.7894 6.4157 37 1 -0.1113 -3.3107 4.4359 38 1 -1.6106 -4.7239 5.7820 39 1 -0.2036 -2.8354 9.3426 40 1 1.3052 -1.4262 8.0029 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342567519.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:58 Heat of formation + Delta-G solvation = -148.880309 kcal Electronic energy + Delta-G solvation = -26654.758693 eV Core-core repulsion = 22541.633588 eV Total energy + Delta-G solvation = -4113.125106 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.121 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.85437 -42.56827 -41.11888 -39.47924 -38.09417 -37.41739 -35.37819 -34.19184 -32.21216 -31.78689 -29.93916 -29.22561 -27.50545 -25.23132 -24.34809 -23.85974 -22.56854 -21.72191 -20.80620 -19.05801 -18.86736 -18.64856 -18.54261 -18.05381 -17.50126 -17.06050 -16.69343 -16.52075 -16.27840 -15.88814 -15.53688 -15.09401 -14.93148 -14.77712 -14.66701 -14.31888 -14.16793 -14.01250 -13.90820 -13.58362 -13.36735 -13.21213 -13.16432 -12.88293 -12.75906 -12.44416 -12.30477 -12.19499 -12.13258 -11.64102 -11.55573 -11.10304 -11.05280 -10.88051 -10.62772 -10.17743 -8.95469 -8.31659 -6.48634 -0.04894 0.18360 0.94493 1.28889 1.39888 1.44092 1.51963 1.63480 1.98487 2.38486 2.59746 2.96739 2.98724 3.20703 3.30153 3.70064 3.77416 3.81027 3.86079 4.06200 4.18056 4.23285 4.37751 4.45400 4.46547 4.66740 4.70101 4.76521 4.90080 4.93310 5.03466 5.06233 5.09727 5.10727 5.19148 5.39748 5.43825 5.55820 5.81582 5.84965 5.92411 6.02846 6.54031 6.77236 6.84826 7.22565 8.76108 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.019719 B = 0.002951 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.598125 B = 9484.946487 C =10366.268064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.220 3.780 3 H 0.015 0.985 4 C -0.552 4.552 5 H 0.065 0.935 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.984 3.016 9 H -0.268 1.268 10 H -0.274 1.274 11 H -0.265 1.265 12 O -0.354 6.354 13 C 0.460 3.540 14 O -0.535 6.535 15 C -0.117 4.117 16 H 0.175 0.825 17 C -0.109 4.109 18 C 0.095 3.905 19 N -0.553 5.553 20 C 0.146 3.854 21 C -0.156 4.156 22 C -0.130 4.130 23 C 0.056 3.944 24 F -0.147 7.147 25 C -0.114 4.114 26 C -0.111 4.111 27 C 0.516 3.484 28 O -0.524 6.524 29 H 0.019 0.981 30 H 0.085 0.915 31 H 0.035 0.965 32 H 0.272 0.728 33 H 0.084 0.916 34 H 0.144 0.856 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.141 0.859 39 H 0.173 0.827 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.763 -3.786 25.285 25.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.167 3.833 3 H 0.033 0.967 4 C -0.589 4.589 5 H 0.083 0.917 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.806 3.194 9 H -0.193 1.193 10 H -0.199 1.199 11 H -0.189 1.189 12 O -0.270 6.270 13 C 0.303 3.697 14 O -0.426 6.426 15 C -0.138 4.138 16 H 0.193 0.807 17 C -0.146 4.146 18 C -0.025 4.025 19 N -0.277 5.277 20 C 0.053 3.947 21 C -0.176 4.176 22 C -0.150 4.150 23 C 0.036 3.964 24 F -0.126 7.126 25 C -0.133 4.133 26 C -0.131 4.131 27 C 0.304 3.696 28 O -0.399 6.399 29 H 0.038 0.962 30 H 0.103 0.897 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.162 0.838 35 H 0.140 0.860 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.159 0.841 39 H 0.190 0.810 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 3.284 -3.767 24.734 25.233 hybrid contribution -0.435 -0.433 -1.386 1.516 sum 2.849 -4.200 23.348 23.893 Atomic orbital electron populations 1.21966 0.97298 0.99818 1.00653 1.20351 0.91651 0.92216 0.79128 0.96703 1.21258 1.33634 1.13951 0.90057 0.91697 1.25836 0.94640 0.95667 1.02102 1.70000 1.36394 1.23605 1.25384 0.85226 0.78993 0.78440 0.76712 1.19286 1.19894 1.18932 1.86568 1.75394 1.43565 1.21470 1.23500 0.74220 0.85595 0.86401 1.90589 1.49442 1.17632 1.84958 1.22046 1.02243 0.98404 0.91155 0.80746 1.22842 1.07345 0.95715 0.88737 1.22812 0.96703 0.86292 0.96692 1.45848 1.41168 1.33454 1.07204 1.18019 0.92061 0.92901 0.91760 1.21433 0.97033 0.97171 1.01960 1.21112 1.00408 1.00968 0.92491 1.17879 0.94458 0.94938 0.89098 1.91476 1.70439 1.73794 1.76914 1.21286 0.95124 0.94522 1.02399 1.20979 1.01086 1.01690 0.89392 1.20707 0.82169 0.84349 0.82404 1.90713 1.50471 1.38033 1.60725 0.96201 0.89687 0.94551 0.91856 0.89705 0.83777 0.86019 0.85309 0.84880 0.84118 0.81006 0.80297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.71 9.33 71.98 0.67 -7.04 16 2 C 0.22 12.58 2.56 29.85 0.08 12.66 16 3 H 0.02 0.94 7.16 -2.39 -0.02 0.93 16 4 C -0.55 -32.56 8.90 25.60 0.23 -32.33 16 5 H 0.06 3.78 7.81 -2.90 -0.02 3.76 16 6 C 0.02 0.98 5.30 84.65 0.45 1.43 16 7 N -0.92 -53.55 11.32 21.45 0.24 -53.31 16 8 Si 0.98 43.91 29.54 68.60 2.03 45.94 16 9 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 12 O -0.35 -18.12 9.44 -49.27 -0.46 -18.58 16 13 C 0.46 19.16 7.23 71.23 0.52 19.68 16 14 O -0.54 -24.44 14.76 21.95 0.32 -24.12 16 15 C -0.12 -3.12 3.43 -11.50 -0.04 -3.16 16 16 H 0.18 3.59 8.14 -2.38 -0.02 3.57 16 17 C -0.11 -1.70 6.47 31.69 0.20 -1.50 16 18 C 0.09 0.93 6.26 86.83 0.54 1.47 16 19 N -0.55 -11.60 3.14 -627.64 -1.97 -13.57 16 20 C 0.15 3.11 6.60 38.12 0.25 3.36 16 21 C -0.16 -4.15 9.28 22.39 0.21 -3.94 16 22 C -0.13 -2.99 10.02 22.30 0.22 -2.77 16 23 C 0.06 1.11 7.30 22.38 0.16 1.27 16 24 F -0.15 -3.08 17.27 44.97 0.78 -2.30 16 25 C -0.11 -1.56 10.02 22.29 0.22 -1.34 16 26 C -0.11 -1.44 9.40 22.38 0.21 -1.23 16 27 C 0.52 15.68 7.34 87.90 0.65 16.32 16 28 O -0.52 -21.13 14.30 -1.36 -0.02 -21.15 16 29 H 0.02 1.00 8.14 -2.39 -0.02 0.99 16 30 H 0.08 4.92 6.07 -2.39 -0.01 4.91 16 31 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.27 14.82 8.31 -92.70 -0.77 14.05 16 33 H 0.08 1.74 7.07 -2.39 -0.02 1.73 16 34 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.12 0.57 7.70 -2.39 -0.02 0.55 16 36 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.13 4.47 5.27 -2.91 -0.02 4.46 16 38 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 39 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 40 H 0.18 0.77 7.01 -2.91 -0.02 0.75 16 Total: -1.00 -80.15 343.74 6.57 -73.59 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 1.08 Total: 10.63 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 4.57 Total: 2.89 kcal Atomic # 7 Polarization: -65.16 SS G_CDS: -1.73 Total: -66.88 kcal Atomic # 8 Polarization: -63.69 SS G_CDS: -0.16 Total: -63.85 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.78 Total: -2.30 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -80.15 6.57 -73.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342567519.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.295 kcal (2) G-P(sol) polarization free energy of solvation -80.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds