Wall clock time and date at job start Sat Apr 11 2020 00:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47468 * 2 1 4 4 C 1.50702 * 109.47213 * 240.00070 * 2 1 3 5 5 H 1.08005 * 120.00143 * 240.00725 * 4 2 1 6 6 C 1.37878 * 119.99960 * 59.99938 * 4 2 1 7 7 N 1.31508 * 119.99965 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99895 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47457 * 60.00256 * 8 6 4 10 10 H 1.48502 * 109.47181 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47069 * 299.99884 * 8 6 4 12 12 O 1.45199 * 109.46823 * 120.00275 * 2 1 3 13 13 C 1.34225 * 117.00283 * 269.99638 * 12 2 1 14 14 O 1.20833 * 119.99309 * 359.97438 * 13 12 2 15 15 C 1.50695 * 120.00407 * 180.02562 * 13 12 2 16 16 H 1.09003 * 110.54058 * 298.84248 * 15 13 12 17 17 C 1.54636 * 110.48763 * 176.23123 * 15 13 12 18 18 C 1.54481 * 101.76143 * 216.52514 * 17 15 13 19 19 N 1.46762 * 105.47658 * 25.41456 * 18 17 15 20 20 C 1.40035 * 124.34851 * 162.96038 * 19 18 17 21 21 C 1.38848 * 120.04462 * 173.99479 * 20 19 18 22 22 C 1.38107 * 119.95499 * 179.76983 * 21 20 19 23 23 C 1.38478 * 120.04455 * 0.51517 * 22 21 20 24 24 F 1.35096 * 119.95500 * 179.72581 * 23 22 21 25 25 C 1.38476 * 120.09005 * 359.73874 * 23 22 21 26 26 C 1.38112 * 120.04149 * 0.02562 * 25 23 22 27 27 C 1.34420 * 111.30036 * 342.98232 * 19 18 17 28 28 O 1.21293 * 124.94067 * 180.42525 * 27 19 18 29 29 H 1.08993 * 109.47063 * 300.00305 * 1 2 3 30 30 H 1.09001 * 109.46912 * 59.99646 * 1 2 3 31 31 H 1.08996 * 109.47133 * 179.97438 * 1 2 3 32 32 H 0.97006 * 120.00143 * 179.97438 * 7 6 4 33 33 H 1.08993 * 110.96742 * 98.40510 * 17 15 13 34 34 H 1.09005 * 110.96468 * 334.64033 * 17 15 13 35 35 H 1.08996 * 110.24230 * 266.40754 * 18 17 15 36 36 H 1.09004 * 110.24128 * 144.41841 * 18 17 15 37 37 H 1.08003 * 120.02120 * 0.02590 * 21 20 19 38 38 H 1.08006 * 119.98058 * 180.23219 * 22 21 20 39 39 H 1.07999 * 119.97656 * 179.97438 * 25 23 22 40 40 H 1.08004 * 120.01870 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.8258 -2.5201 -4.0078 10 1 1.8270 -0.4198 -5.2205 11 1 3.8064 -1.1209 -4.0081 12 8 2.0139 -0.6845 1.1855 13 6 2.2171 0.0638 2.2811 14 8 1.9982 1.2518 2.2503 15 6 2.7192 -0.5772 3.5491 16 1 2.0124 -1.3272 3.9044 17 6 2.9639 0.4941 4.6371 18 6 4.2219 -0.0569 5.3443 19 7 4.9032 -0.8852 4.3425 20 6 6.2384 -1.2974 4.4339 21 6 6.7583 -2.1824 3.4988 22 6 8.0767 -2.5840 3.5879 23 6 8.8770 -2.1129 4.6151 24 9 10.1649 -2.5112 4.7037 25 6 8.3590 -1.2343 5.5517 26 6 7.0424 -0.8265 5.4633 27 6 4.0811 -1.1970 3.3258 28 8 4.3866 -1.8765 2.3687 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.7095 1.1618 -3.4844 33 1 2.1214 0.5493 5.3264 34 1 3.1634 1.4672 4.1883 35 1 3.9362 -0.6631 6.2039 36 1 4.8677 0.7632 5.6582 37 1 6.1332 -2.5533 2.6999 38 1 8.4826 -3.2694 2.8586 39 1 8.9847 -0.8684 6.3524 40 1 6.6387 -0.1416 6.1943 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342567523.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:02 Heat of formation + Delta-G solvation = -128.233145 kcal Electronic energy + Delta-G solvation = -26671.970942 eV Core-core repulsion = 22559.741164 eV Total energy + Delta-G solvation = -4112.229778 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.121 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.99124 -41.49502 -39.58542 -38.46279 -36.83333 -35.76776 -33.35963 -33.11170 -31.39764 -29.79762 -28.93696 -28.26803 -25.31137 -24.10420 -23.47132 -22.62114 -21.17794 -20.47938 -19.41623 -18.02030 -17.65303 -17.49070 -16.98892 -16.56389 -16.14242 -15.75105 -15.60789 -15.08828 -14.88226 -14.69255 -14.37578 -14.13413 -13.83922 -13.59612 -13.43065 -13.22198 -13.08668 -12.65899 -12.54478 -12.21216 -12.15786 -11.86795 -11.41365 -11.33089 -11.20313 -11.03440 -10.84061 -10.39613 -10.31022 -10.26177 -9.92546 -9.69993 -9.56025 -9.36904 -8.91255 -8.47370 -8.07041 -6.16397 -4.22288 0.84983 0.99456 2.19496 2.45146 2.85431 3.30000 3.31851 3.33630 3.42438 3.49646 3.94104 4.10583 4.13659 4.35550 4.51908 4.58521 4.60967 4.70668 4.92040 5.07221 5.08407 5.13239 5.16917 5.31208 5.54063 5.61529 5.66803 5.83283 5.85478 5.88512 6.09650 6.26134 6.59442 6.73649 6.77833 6.85158 6.87182 7.10220 7.59011 7.70227 7.84929 7.90173 8.13888 8.54491 8.88831 9.42747 10.91222 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.014477 B = 0.003387 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.596600 B = 8264.067887 C = 9868.212204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.046 0.954 4 C -0.518 4.518 5 H 0.071 0.929 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.912 3.088 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.336 6.336 13 C 0.469 3.531 14 O -0.512 6.512 15 C -0.121 4.121 16 H 0.146 0.854 17 C -0.119 4.119 18 C 0.096 3.904 19 N -0.562 5.562 20 C 0.165 3.835 21 C -0.129 4.129 22 C -0.120 4.120 23 C 0.066 3.934 24 F -0.143 7.143 25 C -0.125 4.125 26 C -0.133 4.133 27 C 0.527 3.473 28 O -0.466 6.466 29 H 0.016 0.984 30 H 0.100 0.900 31 H 0.038 0.962 32 H 0.266 0.734 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.167 0.833 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.088 -2.873 20.286 22.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.163 3.837 3 H 0.064 0.936 4 C -0.556 4.556 5 H 0.089 0.911 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.739 3.261 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.200 1.200 12 O -0.251 6.251 13 C 0.311 3.689 14 O -0.402 6.402 15 C -0.144 4.144 16 H 0.164 0.836 17 C -0.156 4.156 18 C -0.026 4.026 19 N -0.287 5.287 20 C 0.071 3.929 21 C -0.149 4.149 22 C -0.139 4.139 23 C 0.045 3.955 24 F -0.122 7.122 25 C -0.145 4.145 26 C -0.154 4.154 27 C 0.314 3.686 28 O -0.337 6.337 29 H 0.035 0.965 30 H 0.119 0.881 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.184 0.816 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.090 -2.798 19.509 21.704 hybrid contribution 0.411 -0.307 -0.722 0.886 sum 9.501 -3.105 18.787 21.280 Atomic orbital electron populations 1.22174 0.97412 1.00223 1.01460 1.20701 0.91388 0.93840 0.77742 0.93621 1.21014 1.32327 1.13548 0.88736 0.91124 1.24874 0.94933 0.95113 0.99039 1.69883 1.36247 1.22617 1.24259 0.86319 0.79309 0.79566 0.80889 1.19880 1.21054 1.19952 1.86570 1.74738 1.43031 1.20790 1.22273 0.75384 0.85653 0.85639 1.90617 1.48989 1.16348 1.84236 1.21804 0.96966 1.00821 0.94776 0.83635 1.22693 0.97497 0.99283 0.96168 1.22358 0.94139 0.94875 0.91190 1.45779 1.09105 1.50668 1.23109 1.17804 0.82822 0.96006 0.96290 1.21610 0.95675 0.97247 1.00346 1.21096 0.93624 1.01253 0.97964 1.17685 0.79415 1.00073 0.98285 1.91483 1.35029 1.89595 1.96096 1.20871 0.95726 0.98394 0.99461 1.20590 0.93153 1.02533 0.99118 1.20421 0.86229 0.80394 0.81592 1.90742 1.77790 1.35930 1.29234 0.96522 0.88115 0.94309 0.92381 0.87688 0.87577 0.89578 0.89046 0.81599 0.84217 0.84406 0.84604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 9.33 37.16 0.35 -3.57 16 2 C 0.22 5.87 2.56 -27.88 -0.07 5.80 16 3 H 0.05 1.36 7.15 -51.93 -0.37 0.99 16 4 C -0.52 -15.00 8.90 -34.44 -0.31 -15.30 16 5 H 0.07 2.06 7.81 -52.48 -0.41 1.65 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.62 11.32 55.43 0.63 -24.99 16 8 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 O -0.34 -8.18 9.44 -41.45 -0.39 -8.57 16 13 C 0.47 9.49 7.23 36.00 0.26 9.75 16 14 O -0.51 -11.31 14.74 -18.76 -0.28 -11.59 16 15 C -0.12 -1.67 3.44 -91.78 -0.32 -1.99 16 16 H 0.15 1.58 8.14 -51.93 -0.42 1.16 16 17 C -0.12 -1.12 6.45 -25.09 -0.16 -1.28 16 18 C 0.10 0.72 6.51 -3.12 -0.02 0.70 16 19 N -0.56 -6.62 3.14 -112.25 -0.35 -6.98 16 20 C 0.17 1.95 6.60 -83.66 -0.55 1.40 16 21 C -0.13 -1.69 9.29 -39.40 -0.37 -2.05 16 22 C -0.12 -1.38 10.02 -39.54 -0.40 -1.78 16 23 C 0.07 0.72 7.30 -39.41 -0.29 0.43 16 24 F -0.14 -1.64 17.26 2.25 0.04 -1.60 16 25 C -0.13 -1.14 10.02 -39.54 -0.40 -1.54 16 26 C -0.13 -1.20 9.42 -39.40 -0.37 -1.57 16 27 C 0.53 8.10 7.34 -10.86 -0.08 8.02 16 28 O -0.47 -9.03 14.30 3.86 0.06 -8.97 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.10 2.72 6.07 -51.93 -0.32 2.40 16 31 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.11 1.20 7.06 -51.93 -0.37 0.84 16 35 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.50 7.24 -51.93 -0.38 0.13 16 37 H 0.17 2.53 5.26 -52.48 -0.28 2.26 16 38 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 39 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 40 H 0.14 0.83 6.74 -52.48 -0.35 0.47 16 LS Contribution 343.21 15.07 5.17 5.17 Total: -1.00 -34.00 343.21 -7.52 -41.52 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -4.56 Total: 0.67 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -2.81 Total: -1.33 kcal Atomic # 7 Polarization: -32.24 SS G_CDS: 0.27 Total: -31.96 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.61 Total: -29.13 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.00 -7.52 -41.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342567523.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.712 kcal (2) G-P(sol) polarization free energy of solvation -33.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds