Wall clock time and date at job start Sat Apr 11 2020 00:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47468 * 2 1 4 4 C 1.50702 * 109.47213 * 240.00070 * 2 1 3 5 5 H 1.08005 * 120.00143 * 240.00725 * 4 2 1 6 6 C 1.37878 * 119.99960 * 59.99938 * 4 2 1 7 7 N 1.31508 * 119.99965 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99895 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47457 * 60.00256 * 8 6 4 10 10 H 1.48502 * 109.47181 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47069 * 299.99884 * 8 6 4 12 12 O 1.45199 * 109.46823 * 120.00275 * 2 1 3 13 13 C 1.34225 * 117.00283 * 269.99638 * 12 2 1 14 14 O 1.20833 * 119.99309 * 359.97438 * 13 12 2 15 15 C 1.50695 * 120.00407 * 180.02562 * 13 12 2 16 16 H 1.09003 * 110.54058 * 298.84248 * 15 13 12 17 17 C 1.54636 * 110.48763 * 176.23123 * 15 13 12 18 18 C 1.54481 * 101.76143 * 216.52514 * 17 15 13 19 19 N 1.46762 * 105.47658 * 25.41456 * 18 17 15 20 20 C 1.40035 * 124.34851 * 162.96038 * 19 18 17 21 21 C 1.38848 * 120.04462 * 173.99479 * 20 19 18 22 22 C 1.38107 * 119.95499 * 179.76983 * 21 20 19 23 23 C 1.38478 * 120.04455 * 0.51517 * 22 21 20 24 24 F 1.35096 * 119.95500 * 179.72581 * 23 22 21 25 25 C 1.38476 * 120.09005 * 359.73874 * 23 22 21 26 26 C 1.38112 * 120.04149 * 0.02562 * 25 23 22 27 27 C 1.34420 * 111.30036 * 342.98232 * 19 18 17 28 28 O 1.21293 * 124.94067 * 180.42525 * 27 19 18 29 29 H 1.08993 * 109.47063 * 300.00305 * 1 2 3 30 30 H 1.09001 * 109.46912 * 59.99646 * 1 2 3 31 31 H 1.08996 * 109.47133 * 179.97438 * 1 2 3 32 32 H 0.97006 * 120.00143 * 179.97438 * 7 6 4 33 33 H 1.08993 * 110.96742 * 98.40510 * 17 15 13 34 34 H 1.09005 * 110.96468 * 334.64033 * 17 15 13 35 35 H 1.08996 * 110.24230 * 266.40754 * 18 17 15 36 36 H 1.09004 * 110.24128 * 144.41841 * 18 17 15 37 37 H 1.08003 * 120.02120 * 0.02590 * 21 20 19 38 38 H 1.08006 * 119.98058 * 180.23219 * 22 21 20 39 39 H 1.07999 * 119.97656 * 179.97438 * 25 23 22 40 40 H 1.08004 * 120.01870 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.8258 -2.5201 -4.0078 10 1 1.8270 -0.4198 -5.2205 11 1 3.8064 -1.1209 -4.0081 12 8 2.0139 -0.6845 1.1855 13 6 2.2171 0.0638 2.2811 14 8 1.9982 1.2518 2.2503 15 6 2.7192 -0.5772 3.5491 16 1 2.0124 -1.3272 3.9044 17 6 2.9639 0.4941 4.6371 18 6 4.2219 -0.0569 5.3443 19 7 4.9032 -0.8852 4.3425 20 6 6.2384 -1.2974 4.4339 21 6 6.7583 -2.1824 3.4988 22 6 8.0767 -2.5840 3.5879 23 6 8.8770 -2.1129 4.6151 24 9 10.1649 -2.5112 4.7037 25 6 8.3590 -1.2343 5.5517 26 6 7.0424 -0.8265 5.4633 27 6 4.0811 -1.1970 3.3258 28 8 4.3866 -1.8765 2.3687 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.7095 1.1618 -3.4844 33 1 2.1214 0.5493 5.3264 34 1 3.1634 1.4672 4.1883 35 1 3.9362 -0.6631 6.2039 36 1 4.8677 0.7632 5.6582 37 1 6.1332 -2.5533 2.6999 38 1 8.4826 -3.2694 2.8586 39 1 8.9847 -0.8684 6.3524 40 1 6.6387 -0.1416 6.1943 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342567523.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:01 Heat of formation + Delta-G solvation = -148.631069 kcal Electronic energy + Delta-G solvation = -26672.855462 eV Core-core repulsion = 22559.741164 eV Total energy + Delta-G solvation = -4113.114298 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.121 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.85892 -42.56730 -41.11615 -39.47940 -38.09248 -37.41382 -35.38021 -34.19352 -32.21594 -31.76797 -29.94004 -29.21944 -27.48517 -25.23090 -24.34919 -23.84926 -22.55207 -21.70754 -20.84689 -19.06875 -18.85949 -18.59440 -18.48084 -18.18518 -17.46646 -17.02328 -16.70371 -16.52439 -16.26394 -15.94145 -15.53309 -15.17305 -14.90711 -14.72454 -14.65069 -14.31513 -14.14391 -14.05123 -13.88240 -13.54888 -13.35819 -13.26615 -13.07739 -12.89226 -12.78370 -12.42600 -12.27481 -12.19925 -12.16337 -11.63627 -11.55548 -11.10963 -11.03265 -10.86685 -10.63152 -10.17995 -8.95159 -8.32837 -6.48839 -0.04690 0.18162 0.93365 1.31068 1.37185 1.40921 1.49065 1.64600 1.98183 2.37360 2.59677 2.96189 2.98340 3.20856 3.30023 3.69747 3.77978 3.82180 3.85877 4.05525 4.16784 4.22932 4.39410 4.46637 4.49350 4.65413 4.74998 4.79795 4.90237 4.93545 5.03216 5.07434 5.10424 5.13089 5.19146 5.39861 5.45137 5.60457 5.82200 5.87126 5.92645 6.03924 6.53706 6.78176 6.85434 7.22200 8.74603 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.014477 B = 0.003387 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.596600 B = 8264.067887 C = 9868.212204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.218 3.782 3 H 0.007 0.993 4 C -0.551 4.551 5 H 0.057 0.943 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.978 3.022 9 H -0.264 1.264 10 H -0.270 1.270 11 H -0.274 1.274 12 O -0.355 6.355 13 C 0.459 3.541 14 O -0.535 6.535 15 C -0.115 4.115 16 H 0.178 0.822 17 C -0.109 4.109 18 C 0.094 3.906 19 N -0.554 5.554 20 C 0.146 3.854 21 C -0.155 4.155 22 C -0.131 4.131 23 C 0.056 3.944 24 F -0.147 7.147 25 C -0.114 4.114 26 C -0.113 4.113 27 C 0.514 3.486 28 O -0.524 6.524 29 H 0.031 0.969 30 H 0.082 0.918 31 H 0.045 0.955 32 H 0.272 0.728 33 H 0.146 0.854 34 H 0.084 0.916 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.172 0.828 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.696 -2.447 23.345 25.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.589 4.589 5 H 0.075 0.925 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.801 3.199 9 H -0.189 1.189 10 H -0.194 1.194 11 H -0.199 1.199 12 O -0.270 6.270 13 C 0.303 3.697 14 O -0.426 6.426 15 C -0.137 4.137 16 H 0.195 0.805 17 C -0.147 4.147 18 C -0.025 4.025 19 N -0.278 5.278 20 C 0.052 3.948 21 C -0.176 4.176 22 C -0.150 4.150 23 C 0.036 3.964 24 F -0.126 7.126 25 C -0.133 4.133 26 C -0.133 4.133 27 C 0.301 3.699 28 O -0.400 6.400 29 H 0.050 0.950 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.164 0.836 34 H 0.102 0.898 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.152 0.848 38 H 0.159 0.841 39 H 0.190 0.810 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 9.706 -2.345 22.639 24.743 hybrid contribution 0.295 -0.385 -1.576 1.649 sum 10.001 -2.730 21.063 23.476 Atomic orbital electron populations 1.21969 0.96089 1.00509 1.01240 1.20359 0.92352 0.91773 0.78997 0.97491 1.21242 1.33426 1.13837 0.90396 0.92490 1.25754 0.94674 0.95692 1.01859 1.69982 1.36415 1.23395 1.25352 0.85308 0.78596 0.78834 0.77136 1.18870 1.19445 1.19913 1.86564 1.75444 1.43612 1.21390 1.23501 0.74379 0.85609 0.86249 1.90590 1.49859 1.17421 1.84739 1.22031 0.96615 1.02823 0.92210 0.80465 1.22830 1.00198 0.96544 0.95097 1.22819 0.93161 0.95864 0.90669 1.45858 1.08896 1.50110 1.22897 1.18025 0.83217 0.96428 0.97086 1.21445 0.96147 0.99132 1.00847 1.21120 0.93371 1.01744 0.98771 1.17877 0.79188 1.00680 0.98661 1.91473 1.35263 1.89760 1.96120 1.21283 0.96072 0.96778 0.99212 1.20986 0.92445 1.01685 0.98203 1.20775 0.87272 0.80051 0.81761 1.90727 1.78893 1.38609 1.31724 0.94970 0.89951 0.93617 0.91822 0.83626 0.89758 0.85376 0.85994 0.84752 0.84096 0.81014 0.80355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.30 9.33 71.98 0.67 -6.63 16 2 C 0.22 12.49 2.56 29.85 0.08 12.56 16 3 H 0.01 0.46 7.15 -2.39 -0.02 0.44 16 4 C -0.55 -33.34 8.90 25.60 0.23 -33.12 16 5 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16 6 C 0.02 1.16 5.30 84.66 0.45 1.61 16 7 N -0.91 -53.61 11.32 21.45 0.24 -53.37 16 8 Si 0.98 45.09 29.54 68.60 2.03 47.11 16 9 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 10 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 12 O -0.35 -18.09 9.44 -49.26 -0.47 -18.55 16 13 C 0.46 19.08 7.23 71.23 0.52 19.60 16 14 O -0.54 -24.34 14.74 21.94 0.32 -24.02 16 15 C -0.11 -3.06 3.44 -11.55 -0.04 -3.10 16 16 H 0.18 3.49 8.14 -2.39 -0.02 3.47 16 17 C -0.11 -1.70 6.45 31.65 0.20 -1.49 16 18 C 0.09 0.95 6.51 86.83 0.57 1.52 16 19 N -0.55 -12.00 3.14 -627.63 -1.97 -13.97 16 20 C 0.15 3.24 6.60 38.12 0.25 3.49 16 21 C -0.16 -4.26 9.29 22.38 0.21 -4.05 16 22 C -0.13 -3.10 10.02 22.30 0.22 -2.88 16 23 C 0.06 1.14 7.30 22.38 0.16 1.31 16 24 F -0.15 -3.18 17.26 44.97 0.78 -2.40 16 25 C -0.11 -1.66 10.02 22.30 0.22 -1.44 16 26 C -0.11 -1.57 9.42 22.39 0.21 -1.36 16 27 C 0.51 15.98 7.34 87.90 0.65 16.63 16 28 O -0.52 -21.82 14.30 -1.46 -0.02 -21.84 16 29 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 4.58 6.07 -2.39 -0.01 4.57 16 31 H 0.04 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 33 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 1.74 7.06 -2.38 -0.02 1.73 16 35 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.12 0.58 7.24 -2.38 -0.02 0.57 16 37 H 0.13 4.59 5.26 -2.91 -0.02 4.58 16 38 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16 39 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 40 H 0.18 0.94 6.74 -2.91 -0.02 0.92 16 Total: -1.00 -81.41 343.21 6.59 -74.82 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 1.08 Total: 9.57 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 4.59 Total: 2.64 kcal Atomic # 7 Polarization: -65.61 SS G_CDS: -1.73 Total: -67.34 kcal Atomic # 8 Polarization: -64.25 SS G_CDS: -0.16 Total: -64.41 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.78 Total: -2.40 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -81.41 6.59 -74.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342567523.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.809 kcal (2) G-P(sol) polarization free energy of solvation -81.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds