Wall clock time and date at job start Sat Apr 11 2020 00:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99637 * 2 1 4 4 C 1.53006 * 109.46865 * 179.97438 * 3 2 1 5 5 N 1.46498 * 115.56028 * 324.85597 * 4 3 2 6 6 C 1.46496 * 120.00041 * 269.31614 * 5 4 3 7 7 C 1.34778 * 120.00330 * 89.31548 * 5 4 3 8 8 O 1.21551 * 119.99551 * 357.10089 * 7 5 4 9 9 C 1.47860 * 120.00424 * 177.10050 * 7 5 4 10 10 C 1.39670 * 120.09622 * 45.17593 * 9 7 5 11 11 C 1.38050 * 120.03698 * 179.97438 * 10 9 7 12 12 C 1.38178 * 120.23945 * 0.02562 * 11 10 9 13 13 C 1.39184 * 120.20637 * 0.02562 * 12 11 10 14 14 S 1.76191 * 120.02161 * 179.97438 * 13 12 11 15 15 C 1.76198 * 100.00033 * 274.92671 * 14 13 12 16 16 H 1.08003 * 120.00229 * 5.00751 * 15 14 13 17 17 C 1.38731 * 120.00402 * 185.00875 * 15 14 13 18 18 N 1.31624 * 120.00293 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99670 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.46563 * 90.00148 * 19 17 15 21 21 H 1.48493 * 109.47121 * 210.00082 * 19 17 15 22 22 H 1.48495 * 109.47286 * 330.00694 * 19 17 15 23 23 C 1.38878 * 119.95571 * 359.74236 * 13 12 11 24 24 C 1.52999 * 117.50018 * 179.17027 * 4 3 2 25 25 C 1.53004 * 60.02929 * 252.52250 * 24 4 3 26 26 H 1.09001 * 109.47276 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47604 * 300.00554 * 1 2 3 28 28 H 1.09006 * 109.47111 * 60.00711 * 1 2 3 29 29 H 1.08993 * 109.47686 * 59.99852 * 3 2 1 30 30 H 1.09001 * 109.47027 * 299.99181 * 3 2 1 31 31 H 1.09000 * 109.47312 * 114.43025 * 6 5 4 32 32 H 1.09004 * 109.47411 * 234.43184 * 6 5 4 33 33 H 1.08997 * 109.47433 * 354.43171 * 6 5 4 34 34 H 1.08001 * 119.98667 * 359.95606 * 10 9 7 35 35 H 1.07998 * 119.87737 * 180.02562 * 11 10 9 36 36 H 1.08003 * 119.89684 * 179.97438 * 12 11 10 37 37 H 0.97001 * 119.99483 * 179.97438 * 18 17 15 38 38 H 1.08000 * 120.12140 * 180.27334 * 23 13 12 39 39 H 1.08999 * 117.50239 * 145.02177 * 24 4 3 40 40 H 1.09005 * 117.49894 * 0.02562 * 24 4 3 41 41 H 1.08999 * 117.50104 * 107.47872 * 25 24 4 42 42 H 1.09006 * 117.49515 * 252.47624 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.0799 0.0576 0.7618 6 6 4.4234 0.2265 2.1759 7 6 4.2648 -1.1347 0.1612 8 8 3.9309 -1.2899 -0.9972 9 6 4.8738 -2.2539 0.9114 10 6 4.4519 -2.5368 2.2124 11 6 5.0210 -3.5824 2.9115 12 6 6.0093 -4.3526 2.3291 13 6 6.4381 -4.0790 1.0335 14 16 7.6991 -5.0639 0.2959 15 6 9.1300 -4.2443 0.9168 16 1 9.0246 -3.4369 1.6263 17 6 10.3920 -4.6360 0.4943 18 7 11.4609 -4.0241 0.9585 19 14 10.5744 -6.0330 -0.7325 20 1 10.5543 -5.4853 -2.1127 21 1 11.8621 -6.7338 -0.4967 22 1 9.4516 -6.9900 -0.5633 23 6 5.8680 -3.0322 0.3209 24 6 4.3468 2.4817 -0.0189 25 6 4.2780 1.6042 -1.2704 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8463 -0.8901 31 1 3.7665 -0.3935 2.7860 32 1 5.4589 -0.0738 2.3367 33 1 4.3006 1.2723 2.4573 34 1 3.6802 -1.9370 2.6720 35 1 4.6925 -3.7990 3.9172 36 1 6.4510 -5.1691 2.8812 37 1 12.3432 -4.2983 0.6632 38 1 6.1956 -2.8203 -0.6861 39 1 5.2858 2.4964 0.5345 40 1 3.7940 3.4210 -0.0318 41 1 3.6797 1.9660 -2.1066 42 1 5.1719 1.0418 -1.5405 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411469191.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:10 Heat of formation + Delta-G solvation = -11.233418 kcal Electronic energy + Delta-G solvation = -24632.508662 eV Core-core repulsion = 21091.565549 eV Total energy + Delta-G solvation = -3540.943113 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.39439 -38.65217 -37.53582 -36.66411 -34.20765 -32.49539 -30.68962 -30.50808 -28.44825 -26.83069 -25.75846 -25.67287 -23.88215 -22.70563 -22.31291 -21.05641 -19.01971 -17.86868 -17.06655 -16.84591 -16.36822 -16.03940 -15.95079 -15.53775 -15.07493 -14.91932 -14.75852 -14.28207 -13.94309 -13.60676 -13.27023 -13.03933 -12.91965 -12.84689 -12.62074 -12.35383 -12.31231 -11.74411 -11.64407 -11.47794 -11.29774 -11.19163 -11.08933 -10.92373 -10.54974 -10.39740 -9.90519 -9.72904 -9.55539 -9.15791 -9.07796 -8.67508 -8.52948 -8.07286 -7.11130 -6.32930 -4.07574 1.32993 1.66943 2.80024 2.97127 3.04774 3.20472 3.27878 3.40366 3.52224 3.72740 4.06156 4.27140 4.50527 4.61877 4.70002 4.77110 4.92585 4.99791 5.03167 5.05490 5.07657 5.10116 5.16657 5.25237 5.31656 5.34398 5.40309 5.47971 5.56509 5.70802 5.73790 5.75444 5.85836 5.94618 6.02204 6.26052 6.53941 6.63952 6.67504 6.89139 7.01253 7.18768 7.46319 7.91393 8.39907 8.43926 9.11530 10.76447 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.018642 B = 0.003306 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.635130 B = 8468.111154 C = 8909.741568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.096 3.904 4 C 0.099 3.901 5 N -0.580 5.580 6 C 0.079 3.921 7 C 0.575 3.425 8 O -0.516 6.516 9 C -0.140 4.140 10 C -0.092 4.092 11 C -0.137 4.137 12 C -0.058 4.058 13 C -0.081 4.081 14 S -0.114 6.114 15 C -0.508 4.508 16 H 0.091 0.909 17 C 0.095 3.905 18 N -0.877 5.877 19 Si 0.857 3.143 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.239 1.239 23 C -0.029 4.029 24 C -0.169 4.169 25 C -0.151 4.151 26 H 0.085 0.915 27 H 0.037 0.963 28 H 0.039 0.961 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.131 0.869 37 H 0.271 0.729 38 H 0.132 0.868 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.344 12.405 2.873 23.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C 0.018 3.982 4 C 0.012 3.988 5 N -0.314 5.314 6 C -0.064 4.064 7 C 0.364 3.636 8 O -0.391 6.391 9 C -0.145 4.145 10 C -0.110 4.110 11 C -0.157 4.157 12 C -0.079 4.079 13 C -0.192 4.192 14 S 0.120 5.880 15 C -0.655 4.655 16 H 0.109 0.891 17 C -0.114 4.114 18 N -0.514 5.514 19 Si 0.682 3.318 20 H -0.190 1.190 21 H -0.198 1.198 22 H -0.163 1.163 23 C -0.050 4.050 24 C -0.206 4.206 25 C -0.189 4.189 26 H 0.104 0.896 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.149 0.851 37 H 0.082 0.918 38 H 0.150 0.850 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -19.224 11.201 1.539 22.302 hybrid contribution 0.211 0.849 0.498 1.007 sum -19.013 12.049 2.037 22.602 Atomic orbital electron populations 1.22729 0.81432 1.02818 0.99480 1.88063 1.18979 1.26446 1.95198 1.22192 0.90493 0.85574 0.99991 1.20485 0.90100 0.88630 0.99546 1.46937 1.64425 1.09252 1.10751 1.22015 1.01273 1.02244 0.80859 1.18312 0.77428 0.81619 0.86245 1.90753 1.49299 1.82015 1.17027 1.19779 1.00863 0.98446 0.95410 1.21416 0.99155 0.97574 0.92902 1.21054 0.98171 0.96483 1.00016 1.21863 0.94147 0.97894 0.93966 1.22110 1.00989 0.99251 0.96826 1.83092 0.98211 1.39906 1.66803 1.22246 0.89388 1.22599 1.31253 0.89136 1.24732 0.94638 0.96267 0.95732 1.69926 0.98142 1.40372 1.42925 0.86739 0.79669 0.83185 0.82234 1.19041 1.19829 1.16302 1.21700 0.92469 0.91477 0.99363 1.23391 1.01741 0.93294 1.02201 1.23295 1.02916 1.01276 0.91366 0.89638 0.94411 0.94272 0.93044 0.92463 0.91705 0.91316 0.90932 0.85497 0.85774 0.85077 0.91844 0.84976 0.87696 0.87768 0.87925 0.87885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.37 -4.80 9.69 -35.23 -0.34 -5.14 16 3 C 0.10 0.98 6.15 37.16 0.23 1.21 16 4 C 0.10 1.15 1.65 -131.78 -0.22 0.93 16 5 N -0.58 -7.86 2.74 -167.66 -0.46 -8.32 16 6 C 0.08 0.82 8.93 59.84 0.53 1.36 16 7 C 0.58 9.95 6.65 -12.32 -0.08 9.86 16 8 O -0.52 -10.50 16.11 5.32 0.09 -10.42 16 9 C -0.14 -2.46 5.15 -105.00 -0.54 -3.00 16 10 C -0.09 -1.35 8.16 -39.12 -0.32 -1.67 16 11 C -0.14 -2.04 10.02 -39.67 -0.40 -2.44 16 12 C -0.06 -1.06 9.79 -39.25 -0.38 -1.44 16 13 C -0.08 -1.73 5.45 -38.99 -0.21 -1.94 16 14 S -0.11 -2.81 19.38 -107.50 -2.08 -4.89 16 15 C -0.51 -14.54 10.01 30.91 0.31 -14.23 16 16 H 0.09 2.80 8.02 -52.48 -0.42 2.37 16 17 C 0.10 2.74 5.50 -17.46 -0.10 2.64 16 18 N -0.88 -26.22 13.97 55.49 0.78 -25.44 16 19 Si 0.86 21.13 27.74 -169.99 -4.71 16.41 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.24 -5.74 6.74 56.52 0.38 -5.36 16 23 C -0.03 -0.58 9.43 -38.92 -0.37 -0.95 16 24 C -0.17 -1.47 9.62 -26.73 -0.26 -1.73 16 25 C -0.15 -1.73 9.13 -26.69 -0.24 -1.97 16 26 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.51 7.91 -51.93 -0.41 0.09 16 31 H 0.06 0.61 5.49 -51.93 -0.29 0.33 16 32 H 0.07 0.79 7.67 -51.93 -0.40 0.39 16 33 H 0.07 0.58 7.63 -51.93 -0.40 0.18 16 34 H 0.13 1.50 5.47 -52.49 -0.29 1.22 16 35 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 36 H 0.13 2.30 8.06 -52.48 -0.42 1.88 16 37 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.13 2.81 8.06 -52.49 -0.42 2.38 16 39 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 1.01 8.05 -51.93 -0.42 0.59 16 42 H 0.10 1.42 8.13 -51.93 -0.42 1.00 16 LS Contribution 366.92 15.07 5.53 5.53 Total: -1.00 -34.27 366.92 -8.14 -42.41 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -6.00 Total: 1.83 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -0.93 Total: -11.97 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.32 Total: -33.76 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.26 Total: -15.56 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.71 Total: 16.41 kcal Atomic # 16 Polarization: -2.81 SS G_CDS: -2.08 Total: -4.89 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.27 -8.14 -42.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411469191.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.174 kcal (2) G-P(sol) polarization free energy of solvation -34.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds