Wall clock time and date at job start Sat Apr 11 2020 00:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99637 * 2 1 4 4 C 1.53006 * 109.46865 * 179.97438 * 3 2 1 5 5 N 1.46498 * 115.56028 * 324.85597 * 4 3 2 6 6 C 1.46496 * 120.00041 * 269.31614 * 5 4 3 7 7 C 1.34778 * 120.00330 * 89.31548 * 5 4 3 8 8 O 1.21551 * 119.99551 * 357.10089 * 7 5 4 9 9 C 1.47860 * 120.00424 * 177.10050 * 7 5 4 10 10 C 1.39670 * 120.09622 * 45.17593 * 9 7 5 11 11 C 1.38050 * 120.03698 * 179.97438 * 10 9 7 12 12 C 1.38178 * 120.23945 * 0.02562 * 11 10 9 13 13 C 1.39184 * 120.20637 * 0.02562 * 12 11 10 14 14 S 1.76191 * 120.02161 * 179.97438 * 13 12 11 15 15 C 1.76198 * 100.00033 * 274.92671 * 14 13 12 16 16 H 1.08003 * 120.00229 * 5.00751 * 15 14 13 17 17 C 1.38731 * 120.00402 * 185.00875 * 15 14 13 18 18 N 1.31624 * 120.00293 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99670 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.46563 * 90.00148 * 19 17 15 21 21 H 1.48493 * 109.47121 * 210.00082 * 19 17 15 22 22 H 1.48495 * 109.47286 * 330.00694 * 19 17 15 23 23 C 1.38878 * 119.95571 * 359.74236 * 13 12 11 24 24 C 1.52999 * 117.50018 * 179.17027 * 4 3 2 25 25 C 1.53004 * 60.02929 * 252.52250 * 24 4 3 26 26 H 1.09001 * 109.47276 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47604 * 300.00554 * 1 2 3 28 28 H 1.09006 * 109.47111 * 60.00711 * 1 2 3 29 29 H 1.08993 * 109.47686 * 59.99852 * 3 2 1 30 30 H 1.09001 * 109.47027 * 299.99181 * 3 2 1 31 31 H 1.09000 * 109.47312 * 114.43025 * 6 5 4 32 32 H 1.09004 * 109.47411 * 234.43184 * 6 5 4 33 33 H 1.08997 * 109.47433 * 354.43171 * 6 5 4 34 34 H 1.08001 * 119.98667 * 359.95606 * 10 9 7 35 35 H 1.07998 * 119.87737 * 180.02562 * 11 10 9 36 36 H 1.08003 * 119.89684 * 179.97438 * 12 11 10 37 37 H 0.97001 * 119.99483 * 179.97438 * 18 17 15 38 38 H 1.08000 * 120.12140 * 180.27334 * 23 13 12 39 39 H 1.08999 * 117.50239 * 145.02177 * 24 4 3 40 40 H 1.09005 * 117.49894 * 0.02562 * 24 4 3 41 41 H 1.08999 * 117.50104 * 107.47872 * 25 24 4 42 42 H 1.09006 * 117.49515 * 252.47624 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.0799 0.0576 0.7618 6 6 4.4234 0.2265 2.1759 7 6 4.2648 -1.1347 0.1612 8 8 3.9309 -1.2899 -0.9972 9 6 4.8738 -2.2539 0.9114 10 6 4.4519 -2.5368 2.2124 11 6 5.0210 -3.5824 2.9115 12 6 6.0093 -4.3526 2.3291 13 6 6.4381 -4.0790 1.0335 14 16 7.6991 -5.0639 0.2959 15 6 9.1300 -4.2443 0.9168 16 1 9.0246 -3.4369 1.6263 17 6 10.3920 -4.6360 0.4943 18 7 11.4609 -4.0241 0.9585 19 14 10.5744 -6.0330 -0.7325 20 1 10.5543 -5.4853 -2.1127 21 1 11.8621 -6.7338 -0.4967 22 1 9.4516 -6.9900 -0.5633 23 6 5.8680 -3.0322 0.3209 24 6 4.3468 2.4817 -0.0189 25 6 4.2780 1.6042 -1.2704 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8463 -0.8901 31 1 3.7665 -0.3935 2.7860 32 1 5.4589 -0.0738 2.3367 33 1 4.3006 1.2723 2.4573 34 1 3.6802 -1.9370 2.6720 35 1 4.6925 -3.7990 3.9172 36 1 6.4510 -5.1691 2.8812 37 1 12.3432 -4.2983 0.6632 38 1 6.1956 -2.8203 -0.6861 39 1 5.2858 2.4964 0.5345 40 1 3.7940 3.4210 -0.0318 41 1 3.6797 1.9660 -2.1066 42 1 5.1719 1.0418 -1.5405 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411469191.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:09 Heat of formation + Delta-G solvation = -33.292308 kcal Electronic energy + Delta-G solvation = -24633.465207 eV Core-core repulsion = 21091.565549 eV Total energy + Delta-G solvation = -3541.899658 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.54981 -39.78807 -38.65277 -37.65645 -35.28320 -34.72052 -32.07703 -31.89724 -29.16532 -27.92358 -27.79571 -26.49330 -25.13793 -23.89617 -23.36532 -22.20983 -20.32063 -19.66277 -18.29982 -18.00497 -17.46431 -17.14652 -17.05220 -16.86863 -16.48419 -16.21997 -16.12887 -15.30412 -15.17060 -14.98723 -14.68035 -14.53630 -14.28001 -13.89423 -13.59103 -13.53367 -13.33950 -13.23077 -13.09742 -12.99501 -12.64506 -12.48423 -12.27361 -12.15613 -11.85969 -11.73449 -11.23396 -11.22364 -11.02993 -10.81733 -10.47290 -9.99071 -9.75457 -9.64381 -9.15539 -8.54400 -6.28404 -0.08061 0.21319 1.05142 1.30246 1.43592 1.62175 1.71221 1.88573 2.20996 2.43172 2.54283 2.83741 2.93582 2.97742 3.47595 3.75307 3.84947 3.90707 3.92246 3.95498 4.21176 4.31099 4.34592 4.43065 4.48454 4.51806 4.57614 4.62733 4.64288 4.66514 4.74272 4.84244 4.86510 4.89191 4.92408 5.12278 5.22147 5.30551 5.42564 5.62400 5.68891 5.83134 6.09753 6.29504 6.32178 6.88511 7.15276 8.58892 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.018642 B = 0.003306 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.635130 B = 8468.111154 C = 8909.741568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.408 6.408 3 C 0.095 3.905 4 C 0.077 3.923 5 N -0.573 5.573 6 C 0.070 3.930 7 C 0.569 3.431 8 O -0.561 6.561 9 C -0.145 4.145 10 C -0.070 4.070 11 C -0.117 4.117 12 C -0.067 4.067 13 C -0.112 4.112 14 S -0.120 6.120 15 C -0.521 4.521 16 H 0.050 0.950 17 C 0.044 3.956 18 N -0.917 5.917 19 Si 0.918 3.082 20 H -0.263 1.263 21 H -0.256 1.256 22 H -0.230 1.230 23 C -0.051 4.051 24 C -0.131 4.131 25 C -0.177 4.177 26 H 0.081 0.919 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.169 0.831 35 H 0.175 0.825 36 H 0.136 0.864 37 H 0.278 0.722 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.141 0.859 41 H 0.114 0.886 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.958 13.661 4.800 26.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.327 6.327 3 C 0.018 3.982 4 C -0.009 4.009 5 N -0.304 5.304 6 C -0.071 4.071 7 C 0.357 3.643 8 O -0.439 6.439 9 C -0.150 4.150 10 C -0.088 4.088 11 C -0.137 4.137 12 C -0.087 4.087 13 C -0.223 4.223 14 S 0.113 5.887 15 C -0.668 4.668 16 H 0.068 0.932 17 C -0.161 4.161 18 N -0.555 5.555 19 Si 0.739 3.261 20 H -0.188 1.188 21 H -0.181 1.181 22 H -0.153 1.153 23 C -0.073 4.073 24 C -0.168 4.168 25 C -0.215 4.215 26 H 0.099 0.901 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.123 0.877 34 H 0.186 0.814 35 H 0.192 0.808 36 H 0.154 0.846 37 H 0.088 0.912 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.159 0.841 41 H 0.132 0.868 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.849 12.493 3.505 25.412 hybrid contribution 0.887 0.634 -0.006 1.091 sum -20.962 13.127 3.499 24.980 Atomic orbital electron populations 1.22851 0.79810 1.03111 1.00940 1.88009 1.20957 1.28205 1.95528 1.22328 0.89029 0.85009 1.01879 1.20937 0.91501 0.89130 0.99319 1.46984 1.62942 1.08488 1.12009 1.22257 1.00836 1.04851 0.79126 1.18350 0.77376 0.82752 0.85787 1.90722 1.51482 1.82968 1.18737 1.19935 1.00042 0.98286 0.96706 1.21879 0.98622 0.97058 0.91229 1.21527 0.95826 0.94651 1.01665 1.22022 0.95217 0.98809 0.92679 1.21999 1.01150 1.00422 0.98698 1.82714 0.97703 1.40678 1.67556 1.22347 0.91792 1.22033 1.30579 0.93197 1.25650 0.94172 0.98806 0.97504 1.70019 0.98888 1.42158 1.44449 0.85823 0.80521 0.80225 0.79531 1.18750 1.18052 1.15311 1.21486 0.94425 0.92692 0.98679 1.23502 1.01292 0.93288 0.98768 1.23273 1.02168 1.03072 0.92948 0.90054 0.92261 0.93412 0.90225 0.91289 0.89918 0.92598 0.87691 0.81426 0.80799 0.84607 0.91246 0.87691 0.87684 0.84071 0.86786 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.41 -9.86 9.69 -148.98 -1.44 -11.30 16 3 C 0.10 1.68 6.15 71.98 0.44 2.12 16 4 C 0.08 1.64 1.65 3.63 0.01 1.65 16 5 N -0.57 -14.68 2.74 -802.63 -2.20 -16.88 16 6 C 0.07 1.25 8.93 127.77 1.14 2.39 16 7 C 0.57 19.86 6.65 86.79 0.58 20.43 16 8 O -0.56 -23.87 16.11 -3.88 -0.06 -23.93 16 9 C -0.14 -5.08 5.15 -20.11 -0.10 -5.19 16 10 C -0.07 -1.85 8.16 22.57 0.18 -1.66 16 11 C -0.12 -3.09 10.02 22.21 0.22 -2.87 16 12 C -0.07 -2.39 9.79 22.48 0.22 -2.17 16 13 C -0.11 -4.94 5.45 22.65 0.12 -4.81 16 14 S -0.12 -6.15 19.38 -56.49 -1.09 -7.25 16 15 C -0.52 -31.24 10.01 67.94 0.68 -30.56 16 16 H 0.05 3.29 8.02 -2.91 -0.02 3.26 16 17 C 0.04 2.60 5.50 84.84 0.47 3.07 16 18 N -0.92 -56.59 13.97 21.64 0.30 -56.28 16 19 Si 0.92 44.40 27.74 68.60 1.90 46.30 16 20 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.23 -10.68 6.74 99.48 0.67 -10.01 16 23 C -0.05 -2.19 9.43 22.70 0.21 -1.98 16 24 C -0.13 -1.92 9.62 30.60 0.29 -1.63 16 25 C -0.18 -4.03 9.13 30.62 0.28 -3.75 16 26 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 1.03 7.91 -2.39 -0.02 1.01 16 31 H 0.08 1.17 5.49 -2.39 -0.01 1.16 16 32 H 0.06 1.16 7.67 -2.38 -0.02 1.14 16 33 H 0.10 1.20 7.63 -2.39 -0.02 1.19 16 34 H 0.17 3.10 5.47 -2.91 -0.02 3.09 16 35 H 0.17 2.95 8.06 -2.91 -0.02 2.93 16 36 H 0.14 4.67 8.06 -2.91 -0.02 4.65 16 37 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 38 H 0.10 4.92 8.06 -2.91 -0.02 4.90 16 39 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.14 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.11 2.23 8.05 -2.39 -0.02 2.21 16 42 H 0.07 1.98 8.13 -2.38 -0.02 1.96 16 Total: -1.00 -81.10 366.92 4.38 -76.72 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.98 Total: 15.87 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: 6.00 Total: -23.25 kcal Atomic # 7 Polarization: -71.27 SS G_CDS: -1.90 Total: -73.17 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -1.51 Total: -35.23 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.90 Total: 46.30 kcal Atomic # 16 Polarization: -6.15 SS G_CDS: -1.09 Total: -7.25 kcal Total: -81.10 4.38 -76.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411469191.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.429 kcal (2) G-P(sol) polarization free energy of solvation -81.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds