Wall clock time and date at job start Sat Apr 11 2020 00:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46835 * 2 1 4 4 O 1.42896 * 109.47254 * 119.99848 * 2 1 3 5 5 C 1.52999 * 109.47371 * 240.00138 * 2 1 3 6 6 H 1.08995 * 110.00292 * 185.49522 * 5 2 1 7 7 C 1.54312 * 109.77121 * 306.65682 * 5 2 1 8 8 C 1.55158 * 102.86318 * 141.88449 * 7 5 2 9 9 C 1.54900 * 101.58201 * 324.29906 * 8 7 5 10 10 N 1.47026 * 109.88215 * 64.40108 * 5 2 1 11 11 C 1.34778 * 125.64621 * 61.67908 * 10 5 2 12 12 O 1.21550 * 119.99983 * 172.65927 * 11 10 5 13 13 C 1.47861 * 120.00157 * 352.66558 * 11 10 5 14 14 C 1.39675 * 120.10210 * 20.52036 * 13 11 10 15 15 C 1.38041 * 120.03845 * 179.97438 * 14 13 11 16 16 C 1.38178 * 120.24489 * 359.97438 * 15 14 13 17 17 C 1.39183 * 120.20134 * 0.04774 * 16 15 14 18 18 S 1.76204 * 120.01984 * 179.97438 * 17 16 15 19 19 C 1.76198 * 99.99698 * 94.95152 * 18 17 16 20 20 H 1.08004 * 120.00345 * 354.98943 * 19 18 17 21 21 C 1.38732 * 120.00018 * 174.71048 * 19 18 17 22 22 N 1.31626 * 119.99820 * 0.28137 * 21 19 18 23 23 Si 1.86802 * 120.00298 * 180.27248 * 21 19 18 24 24 H 1.48502 * 109.46913 * 90.00088 * 23 21 19 25 25 H 1.48498 * 109.47029 * 210.00471 * 23 21 19 26 26 H 1.48498 * 109.47145 * 330.00400 * 23 21 19 27 27 C 1.38873 * 119.95940 * 0.22773 * 17 16 15 28 28 H 1.09006 * 109.47455 * 306.38380 * 1 2 3 29 29 H 1.09003 * 109.47665 * 66.38606 * 1 2 3 30 30 H 1.08997 * 109.46926 * 186.38797 * 1 2 3 31 31 H 0.96696 * 114.00182 * 299.99698 * 4 2 1 32 32 H 1.08997 * 110.92851 * 23.46364 * 7 5 2 33 33 H 1.09001 * 110.74037 * 260.21110 * 7 5 2 34 34 H 1.08997 * 111.00371 * 206.22492 * 8 7 5 35 35 H 1.09005 * 111.00290 * 82.37656 * 8 7 5 36 36 H 1.09000 * 110.37119 * 278.17403 * 9 8 7 37 37 H 1.09004 * 110.37023 * 155.84535 * 9 8 7 38 38 H 1.08005 * 119.97879 * 359.96192 * 14 13 11 39 39 H 1.08001 * 119.87612 * 179.97438 * 15 14 13 40 40 H 1.07996 * 119.89829 * 180.02562 * 16 15 14 41 41 H 0.97001 * 120.00067 * 180.02562 * 22 21 19 42 42 H 1.08002 * 120.12134 * 179.74502 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7212 -1.2492 6 1 3.1255 -0.8120 -1.2103 7 6 1.3966 -2.1207 -1.3433 8 6 1.1464 -2.2842 -2.8658 9 6 0.7754 -0.8376 -3.2771 10 7 1.6435 0.0234 -2.4534 11 6 2.0165 1.2825 -2.7567 12 8 1.7388 1.7539 -3.8421 13 6 2.7638 2.0904 -1.7692 14 6 3.4517 1.4633 -0.7278 15 6 4.1493 2.2188 0.1931 16 6 4.1712 3.5965 0.0896 17 6 3.4890 4.2319 -0.9439 18 16 3.5196 5.9891 -1.0710 19 6 4.8513 6.1903 -2.2072 20 1 5.4198 5.3309 -2.5307 21 6 5.1659 7.4520 -2.6907 22 7 4.4731 8.4995 -2.2964 23 14 6.5728 7.6645 -3.9011 24 1 6.0569 7.5340 -5.2875 25 1 7.1801 9.0078 -3.7232 26 1 7.5996 6.6204 -3.6547 27 6 2.7797 3.4804 -1.8717 28 1 -0.3634 0.6096 0.8274 29 1 -0.3634 0.4116 -0.9416 30 1 -0.3633 -1.0213 0.1143 31 1 1.7210 -0.2701 1.9979 32 1 0.4570 -2.1550 -0.7921 33 1 2.0828 -2.8861 -0.9809 34 1 0.3192 -2.9684 -3.0545 35 1 2.0502 -2.6161 -3.3768 36 1 -0.2737 -0.6383 -3.0587 37 1 0.9799 -0.6800 -4.3361 38 1 3.4375 0.3867 -0.6429 39 1 4.6799 1.7312 0.9976 40 1 4.7192 4.1821 0.8129 41 1 4.6928 9.3816 -2.6347 42 1 2.2460 3.9710 -2.6722 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412353786.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:13 Heat of formation + Delta-G solvation = -24.353101 kcal Electronic energy + Delta-G solvation = -25221.386077 eV Core-core repulsion = 21679.874052 eV Total energy + Delta-G solvation = -3541.512025 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.16576 -38.42260 -37.96799 -36.42127 -32.64593 -32.49614 -31.49724 -30.65962 -30.19654 -28.30102 -25.57818 -25.24078 -23.50641 -22.40166 -21.52526 -21.14802 -19.34162 -17.99346 -17.48211 -16.92520 -16.83396 -16.38501 -15.59285 -14.97330 -14.85290 -14.83754 -14.45179 -14.16262 -13.94787 -13.52849 -13.51203 -13.40308 -12.96728 -12.79417 -12.48945 -12.30311 -12.09138 -11.96656 -11.50159 -11.35987 -11.17146 -11.13043 -11.07528 -11.00291 -10.83387 -10.60639 -10.24076 -9.94195 -9.73114 -9.14533 -8.91581 -8.82866 -8.55779 -7.92211 -6.71054 -6.27859 -4.01886 1.16853 1.65241 2.70777 2.96308 3.21428 3.23366 3.28798 3.47073 3.95022 4.03999 4.17298 4.22098 4.25047 4.55459 4.68504 4.78569 4.84152 4.94039 5.07283 5.08733 5.18232 5.21336 5.39327 5.46788 5.48000 5.52718 5.56120 5.60000 5.67893 5.71284 5.75861 5.83054 5.87165 5.93423 6.00148 6.22372 6.26736 6.59221 6.64751 6.92686 7.18687 7.33120 7.42799 7.58845 8.18497 8.33973 9.18227 10.78782 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.020292 B = 0.003525 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.494792 B = 7942.105492 C = 8599.478257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.060 3.940 3 H 0.096 0.904 4 O -0.563 6.563 5 C 0.133 3.867 6 H 0.094 0.906 7 C -0.125 4.125 8 C -0.136 4.136 9 C 0.106 3.894 10 N -0.612 5.612 11 C 0.581 3.419 12 O -0.528 6.528 13 C -0.163 4.163 14 C -0.108 4.108 15 C -0.148 4.148 16 C -0.052 4.052 17 C -0.111 4.111 18 S -0.035 6.035 19 C -0.519 4.519 20 H 0.076 0.924 21 C 0.074 3.926 22 N -0.871 5.871 23 Si 0.920 3.080 24 H -0.275 1.275 25 H -0.281 1.281 26 H -0.271 1.271 27 C -0.017 4.017 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.382 0.618 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.147 0.853 39 H 0.124 0.876 40 H 0.131 0.869 41 H 0.269 0.731 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.017 -22.024 6.054 23.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.001 3.999 3 H 0.113 0.887 4 O -0.368 6.368 5 C 0.030 3.970 6 H 0.111 0.889 7 C -0.163 4.163 8 C -0.174 4.174 9 C -0.017 4.017 10 N -0.348 5.348 11 C 0.372 3.628 12 O -0.404 6.404 13 C -0.168 4.168 14 C -0.126 4.126 15 C -0.168 4.168 16 C -0.073 4.073 17 C -0.222 4.222 18 S 0.199 5.801 19 C -0.667 4.667 20 H 0.094 0.906 21 C -0.135 4.135 22 N -0.506 5.506 23 Si 0.746 3.254 24 H -0.201 1.201 25 H -0.207 1.207 26 H -0.196 1.196 27 C -0.038 4.038 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.230 0.770 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.164 0.836 39 H 0.142 0.858 40 H 0.149 0.851 41 H 0.079 0.921 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.556 -20.990 5.478 22.972 hybrid contribution 1.298 -0.383 -0.893 1.621 sum -6.259 -21.373 4.585 22.738 Atomic orbital electron populations 1.22559 0.96327 1.02391 1.02963 1.22973 0.93589 0.97868 0.85481 0.88715 1.86390 1.77116 1.57505 1.15820 1.21673 0.99606 0.91635 0.84129 0.88879 1.22772 1.02216 0.94935 0.96377 1.22830 1.02611 0.95941 0.95983 1.22235 0.94089 0.88811 0.96516 1.48303 1.51042 1.13638 1.21839 1.18168 0.78428 0.79478 0.86762 1.90791 1.55937 1.70423 1.23276 1.19780 1.04674 0.94329 0.97982 1.22218 0.95376 1.01593 0.93409 1.21079 1.01396 0.94058 1.00267 1.21978 0.94656 0.93995 0.96695 1.22807 0.99070 1.03564 0.96723 1.83562 1.47235 0.89467 1.59814 1.22851 1.16641 0.96396 1.30786 0.90611 1.24997 0.97295 0.94836 0.96392 1.69987 1.39069 0.99146 1.42427 0.86123 0.80953 0.77686 0.80597 1.20098 1.20677 1.19555 1.21906 0.94225 0.91155 0.96553 0.92238 0.91432 0.91536 0.77047 0.89594 0.89744 0.89696 0.90464 0.91396 0.89971 0.83604 0.85791 0.85138 0.92072 0.84566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.65 8.96 37.15 0.33 -1.32 16 2 C 0.06 0.59 2.21 -26.73 -0.06 0.53 16 3 H 0.10 1.14 3.83 -54.99 -0.21 0.93 16 4 O -0.56 -4.80 13.12 -35.23 -0.46 -5.26 16 5 C 0.13 1.34 2.15 -66.96 -0.14 1.20 16 6 H 0.09 0.97 6.06 -51.93 -0.31 0.66 16 7 C -0.13 -0.93 6.09 -24.90 -0.15 -1.09 16 8 C -0.14 -0.95 7.08 -24.59 -0.17 -1.13 16 9 C 0.11 1.06 6.88 -2.53 -0.02 1.05 16 10 N -0.61 -7.69 2.42 -164.12 -0.40 -8.09 16 11 C 0.58 9.84 7.60 -12.32 -0.09 9.75 16 12 O -0.53 -10.86 16.76 5.32 0.09 -10.77 16 13 C -0.16 -2.83 5.15 -104.99 -0.54 -3.37 16 14 C -0.11 -1.56 6.04 -39.12 -0.24 -1.80 16 15 C -0.15 -2.17 10.02 -39.68 -0.40 -2.57 16 16 C -0.05 -0.94 9.79 -39.25 -0.38 -1.32 16 17 C -0.11 -2.38 5.45 -39.00 -0.21 -2.59 16 18 S -0.04 -0.91 21.41 -107.50 -2.30 -3.22 16 19 C -0.52 -14.84 9.46 30.92 0.29 -14.54 16 20 H 0.08 2.16 7.79 -52.48 -0.41 1.75 16 21 C 0.07 2.09 5.49 -17.46 -0.10 1.99 16 22 N -0.87 -25.62 13.22 55.49 0.73 -24.88 16 23 Si 0.92 21.74 29.55 -169.99 -5.02 16.72 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 27 C -0.02 -0.34 9.34 -38.92 -0.36 -0.71 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.70 7.38 -51.93 -0.38 0.32 16 30 H 0.07 0.50 6.11 -51.93 -0.32 0.19 16 31 H 0.38 2.03 9.08 45.56 0.41 2.45 16 32 H 0.09 0.60 5.46 -51.93 -0.28 0.31 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.63 8.01 -51.93 -0.42 0.21 16 37 H 0.08 0.91 7.97 -51.93 -0.41 0.50 16 38 H 0.15 1.77 2.90 -52.48 -0.15 1.62 16 39 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 41 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.14 3.03 7.79 -52.49 -0.41 2.62 16 LS Contribution 348.88 15.07 5.26 5.26 Total: -1.00 -33.45 348.88 -8.92 -42.37 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -4.57 Total: 3.78 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -2.24 Total: -15.91 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: 0.34 Total: -32.97 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.37 Total: -16.03 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -2.30 Total: -3.22 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.45 -8.92 -42.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412353786.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.016 kcal (2) G-P(sol) polarization free energy of solvation -33.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds