Wall clock time and date at job start Sat Apr 11 2020 00:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46835 * 2 1 4 4 O 1.42896 * 109.47254 * 119.99848 * 2 1 3 5 5 C 1.52999 * 109.47371 * 240.00138 * 2 1 3 6 6 H 1.08995 * 110.00292 * 185.49522 * 5 2 1 7 7 C 1.54312 * 109.77121 * 306.65682 * 5 2 1 8 8 C 1.55158 * 102.86318 * 141.88449 * 7 5 2 9 9 C 1.54900 * 101.58201 * 324.29906 * 8 7 5 10 10 N 1.47026 * 109.88215 * 64.40108 * 5 2 1 11 11 C 1.34778 * 125.64621 * 61.67908 * 10 5 2 12 12 O 1.21550 * 119.99983 * 172.65927 * 11 10 5 13 13 C 1.47861 * 120.00157 * 352.66558 * 11 10 5 14 14 C 1.39675 * 120.10210 * 20.52036 * 13 11 10 15 15 C 1.38041 * 120.03845 * 179.97438 * 14 13 11 16 16 C 1.38178 * 120.24489 * 359.97438 * 15 14 13 17 17 C 1.39183 * 120.20134 * 0.04774 * 16 15 14 18 18 S 1.76204 * 120.01984 * 179.97438 * 17 16 15 19 19 C 1.76198 * 99.99698 * 94.95152 * 18 17 16 20 20 H 1.08004 * 120.00345 * 354.98943 * 19 18 17 21 21 C 1.38732 * 120.00018 * 174.71048 * 19 18 17 22 22 N 1.31626 * 119.99820 * 0.28137 * 21 19 18 23 23 Si 1.86802 * 120.00298 * 180.27248 * 21 19 18 24 24 H 1.48502 * 109.46913 * 90.00088 * 23 21 19 25 25 H 1.48498 * 109.47029 * 210.00471 * 23 21 19 26 26 H 1.48498 * 109.47145 * 330.00400 * 23 21 19 27 27 C 1.38873 * 119.95940 * 0.22773 * 17 16 15 28 28 H 1.09006 * 109.47455 * 306.38380 * 1 2 3 29 29 H 1.09003 * 109.47665 * 66.38606 * 1 2 3 30 30 H 1.08997 * 109.46926 * 186.38797 * 1 2 3 31 31 H 0.96696 * 114.00182 * 299.99698 * 4 2 1 32 32 H 1.08997 * 110.92851 * 23.46364 * 7 5 2 33 33 H 1.09001 * 110.74037 * 260.21110 * 7 5 2 34 34 H 1.08997 * 111.00371 * 206.22492 * 8 7 5 35 35 H 1.09005 * 111.00290 * 82.37656 * 8 7 5 36 36 H 1.09000 * 110.37119 * 278.17403 * 9 8 7 37 37 H 1.09004 * 110.37023 * 155.84535 * 9 8 7 38 38 H 1.08005 * 119.97879 * 359.96192 * 14 13 11 39 39 H 1.08001 * 119.87612 * 179.97438 * 15 14 13 40 40 H 1.07996 * 119.89829 * 180.02562 * 16 15 14 41 41 H 0.97001 * 120.00067 * 180.02562 * 22 21 19 42 42 H 1.08002 * 120.12134 * 179.74502 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7212 -1.2492 6 1 3.1255 -0.8120 -1.2103 7 6 1.3966 -2.1207 -1.3433 8 6 1.1464 -2.2842 -2.8658 9 6 0.7754 -0.8376 -3.2771 10 7 1.6435 0.0234 -2.4534 11 6 2.0165 1.2825 -2.7567 12 8 1.7388 1.7539 -3.8421 13 6 2.7638 2.0904 -1.7692 14 6 3.4517 1.4633 -0.7278 15 6 4.1493 2.2188 0.1931 16 6 4.1712 3.5965 0.0896 17 6 3.4890 4.2319 -0.9439 18 16 3.5196 5.9891 -1.0710 19 6 4.8513 6.1903 -2.2072 20 1 5.4198 5.3309 -2.5307 21 6 5.1659 7.4520 -2.6907 22 7 4.4731 8.4995 -2.2964 23 14 6.5728 7.6645 -3.9011 24 1 6.0569 7.5340 -5.2875 25 1 7.1801 9.0078 -3.7232 26 1 7.5996 6.6204 -3.6547 27 6 2.7797 3.4804 -1.8717 28 1 -0.3634 0.6096 0.8274 29 1 -0.3634 0.4116 -0.9416 30 1 -0.3633 -1.0213 0.1143 31 1 1.7210 -0.2701 1.9979 32 1 0.4570 -2.1550 -0.7921 33 1 2.0828 -2.8861 -0.9809 34 1 0.3192 -2.9684 -3.0545 35 1 2.0502 -2.6161 -3.3768 36 1 -0.2737 -0.6383 -3.0587 37 1 0.9799 -0.6800 -4.3361 38 1 3.4375 0.3867 -0.6429 39 1 4.6799 1.7312 0.9976 40 1 4.7192 4.1821 0.8129 41 1 4.6928 9.3816 -2.6347 42 1 2.2460 3.9710 -2.6722 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412353786.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:12 Heat of formation + Delta-G solvation = -47.238769 kcal Electronic energy + Delta-G solvation = -25222.378474 eV Core-core repulsion = 21679.874052 eV Total energy + Delta-G solvation = -3542.504422 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.23806 -39.58958 -39.21067 -37.26201 -34.67284 -33.71104 -32.37598 -32.04188 -31.30145 -29.09115 -27.76335 -26.29621 -24.57115 -23.67687 -22.63662 -21.95017 -20.57328 -19.73789 -18.59162 -18.02311 -17.78140 -17.57444 -16.95087 -16.80372 -16.21337 -15.96620 -15.70388 -15.29774 -15.08968 -14.92180 -14.63392 -14.30544 -14.27113 -13.86780 -13.70770 -13.28912 -13.21249 -13.04941 -12.99778 -12.81536 -12.69378 -12.49850 -12.24218 -12.13976 -11.86211 -11.65614 -11.47899 -11.30802 -11.20753 -11.00673 -10.58276 -10.12249 -9.77869 -9.47805 -8.81980 -8.40979 -6.21151 -0.22686 0.19450 1.27300 1.35590 1.42692 1.53767 1.71650 1.75567 2.21859 2.67721 2.91724 3.07207 3.38969 3.41706 3.49658 3.68311 3.84224 3.89057 3.96687 4.04278 4.14156 4.27694 4.34132 4.37491 4.47710 4.53463 4.60850 4.75416 4.83498 4.85814 4.88785 4.94991 4.99794 5.09819 5.15749 5.20056 5.26785 5.28161 5.36407 5.44543 5.46170 5.80521 6.13802 6.25199 6.85128 6.92165 6.99274 8.65697 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.020292 B = 0.003525 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.494792 B = 7942.105492 C = 8599.478257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.068 3.932 3 H 0.070 0.930 4 O -0.561 6.561 5 C 0.121 3.879 6 H 0.098 0.902 7 C -0.116 4.116 8 C -0.122 4.122 9 C 0.094 3.906 10 N -0.601 5.601 11 C 0.575 3.425 12 O -0.580 6.580 13 C -0.165 4.165 14 C -0.079 4.079 15 C -0.128 4.128 16 C -0.055 4.055 17 C -0.132 4.132 18 S -0.088 6.088 19 C -0.539 4.539 20 H 0.065 0.935 21 C 0.022 3.978 22 N -0.905 5.905 23 Si 0.990 3.010 24 H -0.272 1.272 25 H -0.267 1.267 26 H -0.264 1.264 27 C -0.040 4.040 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.398 0.602 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.181 0.819 39 H 0.173 0.827 40 H 0.138 0.862 41 H 0.274 0.726 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.171 -26.146 7.552 27.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.009 3.991 3 H 0.087 0.913 4 O -0.368 6.368 5 C 0.018 3.982 6 H 0.115 0.885 7 C -0.153 4.153 8 C -0.160 4.160 9 C -0.027 4.027 10 N -0.335 5.335 11 C 0.365 3.635 12 O -0.460 6.460 13 C -0.170 4.170 14 C -0.097 4.097 15 C -0.147 4.147 16 C -0.076 4.076 17 C -0.243 4.243 18 S 0.146 5.854 19 C -0.686 4.686 20 H 0.083 0.917 21 C -0.183 4.183 22 N -0.541 5.541 23 Si 0.812 3.188 24 H -0.198 1.198 25 H -0.191 1.191 26 H -0.188 1.188 27 C -0.062 4.062 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.248 0.752 32 H 0.114 0.886 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.197 0.803 39 H 0.191 0.809 40 H 0.155 0.845 41 H 0.084 0.916 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.729 -25.161 7.029 26.977 hybrid contribution 0.927 0.680 -1.250 1.699 sum -5.801 -24.481 5.778 25.814 Atomic orbital electron populations 1.22528 0.95649 1.03629 1.02149 1.22665 0.94090 0.96257 0.86131 0.91313 1.86363 1.77054 1.57313 1.16093 1.21966 1.00123 0.93045 0.83075 0.88510 1.22787 1.02872 0.93084 0.96575 1.22825 1.03815 0.93719 0.95651 1.22519 0.94156 0.90556 0.95474 1.48304 1.49869 1.12289 1.23027 1.18145 0.78483 0.80844 0.85994 1.90758 1.58162 1.71920 1.25207 1.19842 1.05068 0.92947 0.99120 1.22618 0.92611 1.03128 0.91299 1.21501 1.00159 0.92276 1.00801 1.22076 0.94153 0.95785 0.95583 1.22458 1.02254 1.00314 0.99309 1.83400 1.47234 0.95147 1.59575 1.23077 1.17509 0.96507 1.31529 0.91711 1.25973 0.99977 0.94306 0.98089 1.70097 1.40702 0.99687 1.43623 0.85078 0.77610 0.78312 0.77828 1.19755 1.19103 1.18805 1.21572 0.95436 0.92916 0.96237 0.91747 0.93407 0.89491 0.75165 0.88570 0.87849 0.86952 0.90139 0.90534 0.91607 0.80309 0.80949 0.84461 0.91637 0.88096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.74 8.96 71.98 0.64 -2.10 16 2 C 0.07 1.10 2.21 30.59 0.07 1.17 16 3 H 0.07 1.48 3.83 -5.26 -0.02 1.46 16 4 O -0.56 -6.82 13.12 -148.98 -1.95 -8.77 16 5 C 0.12 2.01 2.15 45.34 0.10 2.11 16 6 H 0.10 1.59 6.06 -2.39 -0.01 1.57 16 7 C -0.12 -1.18 6.09 31.78 0.19 -0.98 16 8 C -0.12 -1.26 7.08 31.98 0.23 -1.03 16 9 C 0.09 1.76 6.88 86.85 0.60 2.36 16 10 N -0.60 -14.39 2.42 -791.44 -1.91 -16.30 16 11 C 0.57 19.96 7.60 86.79 0.66 20.62 16 12 O -0.58 -25.39 16.76 -3.87 -0.06 -25.45 16 13 C -0.16 -5.80 5.15 -20.11 -0.10 -5.91 16 14 C -0.08 -2.10 6.04 22.57 0.14 -1.96 16 15 C -0.13 -3.34 10.02 22.21 0.22 -3.12 16 16 C -0.06 -1.96 9.79 22.48 0.22 -1.74 16 17 C -0.13 -5.95 5.45 22.65 0.12 -5.83 16 18 S -0.09 -4.88 21.41 -56.49 -1.21 -6.08 16 19 C -0.54 -32.31 9.46 67.94 0.64 -31.67 16 20 H 0.06 3.88 7.79 -2.91 -0.02 3.85 16 21 C 0.02 1.28 5.49 84.84 0.47 1.75 16 22 N -0.90 -55.09 13.22 21.64 0.29 -54.81 16 23 Si 0.99 45.54 29.55 68.60 2.03 47.57 16 24 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 27 C -0.04 -1.75 9.34 22.70 0.21 -1.53 16 28 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.05 0.92 7.38 -2.39 -0.02 0.90 16 30 H 0.09 0.96 6.11 -2.39 -0.01 0.94 16 31 H 0.40 2.36 9.08 -74.06 -0.67 1.69 16 32 H 0.10 0.83 5.46 -2.39 -0.01 0.82 16 33 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.11 0.62 8.14 -2.39 -0.02 0.61 16 35 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.08 1.31 8.01 -2.39 -0.02 1.29 16 37 H 0.07 1.46 7.97 -2.38 -0.02 1.44 16 38 H 0.18 3.61 2.90 -2.91 -0.01 3.60 16 39 H 0.17 2.96 8.06 -2.91 -0.02 2.93 16 40 H 0.14 4.62 8.06 -2.91 -0.02 4.60 16 41 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 42 H 0.10 5.04 7.79 -2.91 -0.02 5.02 16 Total: -1.00 -79.20 348.88 1.96 -77.24 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.38 Total: 14.47 kcal Atomic # 6 Polarization: -32.27 SS G_CDS: 4.41 Total: -27.86 kcal Atomic # 7 Polarization: -69.48 SS G_CDS: -1.63 Total: -71.11 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -2.02 Total: -34.23 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: -4.88 SS G_CDS: -1.21 Total: -6.08 kcal Total: -79.20 1.96 -77.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412353786.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.002 kcal (2) G-P(sol) polarization free energy of solvation -79.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds