Wall clock time and date at job start Sat Apr 11 2020 00:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46857 * 2 1 4 4 O 1.42901 * 109.47199 * 239.99289 * 2 1 3 5 5 C 1.53004 * 109.46852 * 119.99330 * 2 1 3 6 6 H 1.09001 * 109.87490 * 53.64289 * 5 2 1 7 7 C 1.54324 * 109.88118 * 174.81695 * 5 2 1 8 8 C 1.55153 * 102.94243 * 141.60856 * 7 5 2 9 9 C 1.55121 * 101.48792 * 324.33414 * 8 7 5 10 10 N 1.47018 * 109.88254 * 292.62465 * 5 2 1 11 11 C 1.34775 * 125.65235 * 61.60696 * 10 5 2 12 12 O 1.21556 * 119.99829 * 359.84491 * 11 10 5 13 13 C 1.47862 * 120.00181 * 179.84216 * 11 10 5 14 14 C 1.39665 * 120.10240 * 20.81401 * 13 11 10 15 15 C 1.38041 * 120.04239 * 179.97438 * 14 13 11 16 16 C 1.38180 * 120.24258 * 359.97106 * 15 14 13 17 17 C 1.39182 * 120.19887 * 0.05176 * 16 15 14 18 18 S 1.76198 * 120.01981 * 179.97438 * 17 16 15 19 19 C 1.76199 * 100.00389 * 91.56247 * 18 17 16 20 20 H 1.08002 * 119.99641 * 354.33327 * 19 18 17 21 21 C 1.38731 * 120.00110 * 174.05204 * 19 18 17 22 22 N 1.31622 * 120.00059 * 0.27504 * 21 19 18 23 23 Si 1.86803 * 119.99864 * 180.27767 * 21 19 18 24 24 H 1.48502 * 109.46976 * 89.99811 * 23 21 19 25 25 H 1.48499 * 109.46934 * 209.99968 * 23 21 19 26 26 H 1.48500 * 109.46999 * 330.00037 * 23 21 19 27 27 C 1.38872 * 119.96139 * 0.22548 * 17 16 15 28 28 H 1.08993 * 109.47317 * 322.46720 * 1 2 3 29 29 H 1.09004 * 109.47086 * 82.46916 * 1 2 3 30 30 H 1.09005 * 109.47024 * 202.46330 * 1 2 3 31 31 H 0.96695 * 113.99763 * 60.00196 * 4 2 1 32 32 H 1.09001 * 110.71673 * 259.97546 * 7 5 2 33 33 H 1.09002 * 110.71629 * 23.06728 * 7 5 2 34 34 H 1.09008 * 110.99950 * 82.57257 * 8 7 5 35 35 H 1.08998 * 111.00457 * 206.37901 * 8 7 5 36 36 H 1.08998 * 110.49568 * 278.45540 * 9 8 7 37 37 H 1.09002 * 110.34708 * 156.05621 * 9 8 7 38 38 H 1.08005 * 119.97970 * 359.95091 * 14 13 11 39 39 H 1.08000 * 119.88019 * 180.02562 * 15 14 13 40 40 H 1.07996 * 119.90043 * 180.02562 * 16 15 14 41 41 H 0.96998 * 119.99770 * 179.97438 * 22 21 19 42 42 H 1.08003 * 120.12516 * 179.75362 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.0400 -0.7211 1.2494 6 1 1.5905 -1.7120 1.3147 7 6 3.5776 -0.8412 1.1952 8 6 3.9968 -0.6048 2.6702 9 6 2.9568 0.4542 3.1210 10 7 1.7052 0.0599 2.4491 11 6 0.4604 0.3691 2.8631 12 8 -0.5032 -0.0041 2.2230 13 6 0.2669 1.1621 4.0960 14 6 1.3076 1.9502 4.5925 15 6 1.1254 2.6905 5.7433 16 6 -0.0853 2.6563 6.4084 17 6 -1.1290 1.8740 5.9228 18 16 -2.6706 1.8334 6.7752 19 6 -3.5162 3.1344 5.9405 20 1 -2.9948 3.7368 5.2114 21 6 -4.8534 3.3813 6.2156 22 7 -5.4889 2.6470 7.1042 23 14 -5.7520 4.7557 5.3250 24 1 -6.3630 4.2227 4.0809 25 1 -6.8163 5.3024 6.2045 26 1 -4.7908 5.8343 4.9817 27 6 -0.9530 1.1215 4.7691 28 1 -0.3633 0.8149 0.6260 29 1 -0.3633 0.1347 -1.0188 30 1 -0.3633 -0.9497 0.3927 31 1 1.7211 -0.2703 -1.9979 32 1 3.8752 -1.8363 0.8643 33 1 4.0013 -0.0769 0.5437 34 1 3.9050 -1.5207 3.2540 35 1 5.0096 -0.2062 2.7294 36 1 3.2623 1.4500 2.7997 37 1 2.8316 0.4256 4.2034 38 1 2.2556 1.9802 4.0759 39 1 1.9318 3.2994 6.1246 40 1 -0.2219 3.2380 7.3080 41 1 -6.4237 2.8199 7.2968 42 1 -1.7598 0.5104 4.3921 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412353794.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:16 Heat of formation + Delta-G solvation = -35.137133 kcal Electronic energy + Delta-G solvation = -24755.367692 eV Core-core repulsion = 21213.388036 eV Total energy + Delta-G solvation = -3541.979656 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.81833 -38.55943 -37.40901 -36.81347 -32.51119 -32.39289 -31.61921 -30.64128 -30.05187 -28.31098 -25.57214 -24.81218 -23.24445 -22.50825 -21.72771 -21.04245 -19.40294 -18.12357 -17.69144 -17.08157 -16.36594 -16.29837 -15.63522 -14.90427 -14.85108 -14.60541 -14.50854 -14.17801 -13.91116 -13.55388 -13.45046 -13.02632 -13.00770 -12.90265 -12.54654 -12.37332 -12.32794 -11.81834 -11.34233 -11.20913 -11.10752 -11.10560 -11.08471 -10.94452 -10.64783 -10.57901 -10.17504 -9.93013 -9.49780 -9.16470 -8.99029 -8.77421 -8.56051 -8.01812 -6.71621 -6.28823 -4.02918 1.18811 1.65580 2.73031 2.95051 3.20170 3.22246 3.27566 3.46731 4.01444 4.10993 4.22268 4.23860 4.25588 4.62327 4.75843 4.80596 4.95574 5.02567 5.07684 5.17086 5.21075 5.25942 5.30103 5.44650 5.47457 5.51536 5.61025 5.70455 5.72060 5.82024 5.87234 5.96757 5.97371 6.07632 6.23612 6.25200 6.57732 6.58474 6.64541 6.92757 7.19384 7.38125 7.44085 7.57427 8.22218 8.32611 9.17106 10.77920 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.017571 B = 0.003369 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.181106 B = 8309.823472 C = 9319.521664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.094 3.906 3 H 0.051 0.949 4 O -0.568 6.568 5 C 0.146 3.854 6 H 0.082 0.918 7 C -0.117 4.117 8 C -0.138 4.138 9 C 0.091 3.909 10 N -0.610 5.610 11 C 0.568 3.432 12 O -0.515 6.515 13 C -0.149 4.149 14 C -0.110 4.110 15 C -0.142 4.142 16 C -0.056 4.056 17 C -0.106 4.106 18 S -0.037 6.037 19 C -0.519 4.519 20 H 0.075 0.925 21 C 0.074 3.926 22 N -0.870 5.870 23 Si 0.920 3.080 24 H -0.275 1.275 25 H -0.281 1.281 26 H -0.271 1.271 27 C -0.020 4.020 28 H 0.085 0.915 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.379 0.621 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.136 0.864 39 H 0.123 0.877 40 H 0.130 0.870 41 H 0.270 0.730 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.572 -3.888 -10.203 23.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.035 3.965 3 H 0.069 0.931 4 O -0.374 6.374 5 C 0.042 3.958 6 H 0.100 0.900 7 C -0.155 4.155 8 C -0.176 4.176 9 C -0.032 4.032 10 N -0.346 5.346 11 C 0.360 3.640 12 O -0.392 6.392 13 C -0.154 4.154 14 C -0.129 4.129 15 C -0.162 4.162 16 C -0.077 4.077 17 C -0.217 4.217 18 S 0.198 5.802 19 C -0.667 4.667 20 H 0.093 0.907 21 C -0.135 4.135 22 N -0.506 5.506 23 Si 0.746 3.254 24 H -0.201 1.201 25 H -0.207 1.207 26 H -0.196 1.196 27 C -0.042 4.042 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.226 0.774 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.153 0.847 39 H 0.141 0.859 40 H 0.148 0.852 41 H 0.079 0.921 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 19.630 -5.175 -9.088 22.242 hybrid contribution -0.435 2.084 -1.981 2.908 sum 19.195 -3.091 -11.069 22.373 Atomic orbital electron populations 1.22953 0.94270 1.05691 1.00322 1.22202 0.94473 0.94510 0.85339 0.93095 1.86406 1.77111 1.58019 1.15825 1.21440 0.95651 0.95062 0.83609 0.89975 1.22575 0.93052 1.03436 0.96477 1.22931 0.98821 0.99495 0.96365 1.22839 0.83665 0.97870 0.98800 1.48293 1.05540 1.55044 1.25692 1.18152 0.81386 0.79800 0.84679 1.90854 1.39837 1.53882 1.54611 1.19767 0.96273 1.02531 0.96832 1.21897 0.98315 0.96235 0.96413 1.21091 0.97854 1.00766 0.96486 1.21978 0.91969 0.95121 0.98648 1.22831 1.02173 0.98268 0.98399 1.83594 1.01798 1.49086 1.45762 1.22832 0.98031 1.17457 1.28333 0.90653 1.24998 0.96205 0.97085 0.95247 1.69986 1.11077 1.38294 1.31197 0.86127 0.79051 0.80882 0.79306 1.20113 1.20668 1.19577 1.21903 0.94815 0.95263 0.92201 0.89688 0.94267 0.90842 0.77362 0.89829 0.90376 0.90288 0.89659 0.90908 0.88936 0.84706 0.85930 0.85159 0.92059 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 7.70 37.16 0.29 -2.10 16 2 C 0.09 1.07 3.18 -26.73 -0.09 0.98 16 3 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 4 O -0.57 -5.66 12.83 -35.23 -0.45 -6.11 16 5 C 0.15 1.63 2.84 -66.95 -0.19 1.45 16 6 H 0.08 1.04 8.00 -51.93 -0.42 0.62 16 7 C -0.12 -0.95 6.02 -24.90 -0.15 -1.10 16 8 C -0.14 -0.93 7.10 -24.47 -0.17 -1.10 16 9 C 0.09 0.78 4.97 -2.41 -0.01 0.77 16 10 N -0.61 -7.43 3.06 -163.98 -0.50 -7.93 16 11 C 0.57 9.09 7.15 -12.32 -0.09 9.01 16 12 O -0.51 -9.61 11.41 5.32 0.06 -9.55 16 13 C -0.15 -2.50 5.77 -105.00 -0.61 -3.11 16 14 C -0.11 -1.51 8.04 -39.12 -0.31 -1.83 16 15 C -0.14 -2.02 10.02 -39.67 -0.40 -2.42 16 16 C -0.06 -1.00 9.79 -39.25 -0.38 -1.39 16 17 C -0.11 -2.26 5.45 -39.00 -0.21 -2.47 16 18 S -0.04 -0.95 21.41 -107.50 -2.30 -3.25 16 19 C -0.52 -14.71 9.46 30.91 0.29 -14.42 16 20 H 0.08 2.12 7.79 -52.49 -0.41 1.71 16 21 C 0.07 2.07 5.49 -17.46 -0.10 1.98 16 22 N -0.87 -25.51 13.22 55.49 0.73 -24.78 16 23 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 C -0.02 -0.41 9.34 -38.92 -0.36 -0.77 16 28 H 0.08 1.37 5.70 -51.97 -0.30 1.08 16 29 H 0.04 0.46 8.04 -51.93 -0.42 0.05 16 30 H 0.07 1.14 6.78 -51.93 -0.35 0.79 16 31 H 0.38 2.38 9.01 45.56 0.41 2.79 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.60 7.85 -51.93 -0.41 0.19 16 34 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.53 7.27 -51.93 -0.38 0.16 16 37 H 0.09 0.80 6.07 -51.93 -0.32 0.49 16 38 H 0.14 1.38 4.04 -52.48 -0.21 1.16 16 39 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 41 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.14 2.96 7.79 -52.48 -0.41 2.55 16 LS Contribution 350.47 15.07 5.28 5.28 Total: -1.00 -32.82 350.47 -9.57 -42.39 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -4.87 Total: 3.95 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -2.49 Total: -16.54 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.23 Total: -32.71 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.39 Total: -15.66 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -0.95 SS G_CDS: -2.30 Total: -3.25 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.82 -9.57 -42.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412353794.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.254 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds