Wall clock time and date at job start Sat Apr 11 2020 00:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46857 * 2 1 4 4 O 1.42901 * 109.47199 * 239.99289 * 2 1 3 5 5 C 1.53004 * 109.46852 * 119.99330 * 2 1 3 6 6 H 1.09001 * 109.87490 * 53.64289 * 5 2 1 7 7 C 1.54324 * 109.88118 * 174.81695 * 5 2 1 8 8 C 1.55153 * 102.94243 * 141.60856 * 7 5 2 9 9 C 1.55121 * 101.48792 * 324.33414 * 8 7 5 10 10 N 1.47018 * 109.88254 * 292.62465 * 5 2 1 11 11 C 1.34775 * 125.65235 * 61.60696 * 10 5 2 12 12 O 1.21556 * 119.99829 * 359.84491 * 11 10 5 13 13 C 1.47862 * 120.00181 * 179.84216 * 11 10 5 14 14 C 1.39665 * 120.10240 * 20.81401 * 13 11 10 15 15 C 1.38041 * 120.04239 * 179.97438 * 14 13 11 16 16 C 1.38180 * 120.24258 * 359.97106 * 15 14 13 17 17 C 1.39182 * 120.19887 * 0.05176 * 16 15 14 18 18 S 1.76198 * 120.01981 * 179.97438 * 17 16 15 19 19 C 1.76199 * 100.00389 * 91.56247 * 18 17 16 20 20 H 1.08002 * 119.99641 * 354.33327 * 19 18 17 21 21 C 1.38731 * 120.00110 * 174.05204 * 19 18 17 22 22 N 1.31622 * 120.00059 * 0.27504 * 21 19 18 23 23 Si 1.86803 * 119.99864 * 180.27767 * 21 19 18 24 24 H 1.48502 * 109.46976 * 89.99811 * 23 21 19 25 25 H 1.48499 * 109.46934 * 209.99968 * 23 21 19 26 26 H 1.48500 * 109.46999 * 330.00037 * 23 21 19 27 27 C 1.38872 * 119.96139 * 0.22548 * 17 16 15 28 28 H 1.08993 * 109.47317 * 322.46720 * 1 2 3 29 29 H 1.09004 * 109.47086 * 82.46916 * 1 2 3 30 30 H 1.09005 * 109.47024 * 202.46330 * 1 2 3 31 31 H 0.96695 * 113.99763 * 60.00196 * 4 2 1 32 32 H 1.09001 * 110.71673 * 259.97546 * 7 5 2 33 33 H 1.09002 * 110.71629 * 23.06728 * 7 5 2 34 34 H 1.09008 * 110.99950 * 82.57257 * 8 7 5 35 35 H 1.08998 * 111.00457 * 206.37901 * 8 7 5 36 36 H 1.08998 * 110.49568 * 278.45540 * 9 8 7 37 37 H 1.09002 * 110.34708 * 156.05621 * 9 8 7 38 38 H 1.08005 * 119.97970 * 359.95091 * 14 13 11 39 39 H 1.08000 * 119.88019 * 180.02562 * 15 14 13 40 40 H 1.07996 * 119.90043 * 180.02562 * 16 15 14 41 41 H 0.96998 * 119.99770 * 179.97438 * 22 21 19 42 42 H 1.08003 * 120.12516 * 179.75362 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.0400 -0.7211 1.2494 6 1 1.5905 -1.7120 1.3147 7 6 3.5776 -0.8412 1.1952 8 6 3.9968 -0.6048 2.6702 9 6 2.9568 0.4542 3.1210 10 7 1.7052 0.0599 2.4491 11 6 0.4604 0.3691 2.8631 12 8 -0.5032 -0.0041 2.2230 13 6 0.2669 1.1621 4.0960 14 6 1.3076 1.9502 4.5925 15 6 1.1254 2.6905 5.7433 16 6 -0.0853 2.6563 6.4084 17 6 -1.1290 1.8740 5.9228 18 16 -2.6706 1.8334 6.7752 19 6 -3.5162 3.1344 5.9405 20 1 -2.9948 3.7368 5.2114 21 6 -4.8534 3.3813 6.2156 22 7 -5.4889 2.6470 7.1042 23 14 -5.7520 4.7557 5.3250 24 1 -6.3630 4.2227 4.0809 25 1 -6.8163 5.3024 6.2045 26 1 -4.7908 5.8343 4.9817 27 6 -0.9530 1.1215 4.7691 28 1 -0.3633 0.8149 0.6260 29 1 -0.3633 0.1347 -1.0188 30 1 -0.3633 -0.9497 0.3927 31 1 1.7211 -0.2703 -1.9979 32 1 3.8752 -1.8363 0.8643 33 1 4.0013 -0.0769 0.5437 34 1 3.9050 -1.5207 3.2540 35 1 5.0096 -0.2062 2.7294 36 1 3.2623 1.4500 2.7997 37 1 2.8316 0.4256 4.2034 38 1 2.2556 1.9802 4.0759 39 1 1.9318 3.2994 6.1246 40 1 -0.2219 3.2380 7.3080 41 1 -6.4237 2.8199 7.2968 42 1 -1.7598 0.5104 4.3921 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412353794.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:29:16 Heat of formation + Delta-G solvation = -57.718486 kcal Electronic energy + Delta-G solvation = -24756.346893 eV Core-core repulsion = 21213.388036 eV Total energy + Delta-G solvation = -3542.958857 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.87604 -39.74013 -38.58968 -37.65494 -34.67140 -33.47839 -32.46055 -31.99605 -31.22961 -29.19146 -27.75985 -25.86699 -24.30603 -23.77067 -22.68633 -21.95538 -20.51752 -19.85306 -18.78625 -18.31617 -17.63253 -17.21054 -16.95090 -16.83631 -16.15808 -15.80674 -15.62045 -15.37525 -14.95823 -14.82710 -14.62576 -14.28331 -13.93466 -13.92924 -13.72749 -13.42280 -13.36129 -13.23038 -13.10944 -12.99713 -12.60849 -12.41944 -12.17510 -11.84050 -11.73397 -11.67975 -11.43989 -11.25420 -11.06906 -10.80039 -10.62354 -10.00398 -9.70403 -9.67224 -8.82128 -8.40976 -6.21133 -0.15160 0.24266 1.27660 1.35646 1.43709 1.58653 1.75998 1.80825 2.22330 2.75091 2.92081 3.21719 3.40119 3.46112 3.53025 3.74203 3.86136 3.95127 4.03279 4.09860 4.16756 4.25598 4.38035 4.43851 4.46676 4.57095 4.66606 4.72599 4.82046 4.90131 4.94829 4.99159 5.01377 5.15122 5.20060 5.31074 5.34065 5.36605 5.37476 5.45527 5.51016 5.87470 6.13928 6.35566 6.78175 6.99338 7.04884 8.66111 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.017571 B = 0.003369 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.181106 B = 8309.823472 C = 9319.521664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.104 3.896 3 H 0.063 0.937 4 O -0.571 6.571 5 C 0.137 3.863 6 H 0.058 0.942 7 C -0.108 4.108 8 C -0.126 4.126 9 C 0.075 3.925 10 N -0.602 5.602 11 C 0.561 3.439 12 O -0.556 6.556 13 C -0.150 4.150 14 C -0.085 4.085 15 C -0.120 4.120 16 C -0.065 4.065 17 C -0.128 4.128 18 S -0.096 6.096 19 C -0.536 4.536 20 H 0.066 0.934 21 C 0.020 3.980 22 N -0.906 5.906 23 Si 0.991 3.009 24 H -0.272 1.272 25 H -0.268 1.268 26 H -0.262 1.262 27 C -0.046 4.046 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.396 0.604 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.119 0.881 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.185 0.815 39 H 0.176 0.824 40 H 0.134 0.866 41 H 0.274 0.726 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.014 -2.131 -11.573 27.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.044 3.956 3 H 0.081 0.919 4 O -0.378 6.378 5 C 0.034 3.966 6 H 0.076 0.924 7 C -0.146 4.146 8 C -0.164 4.164 9 C -0.046 4.046 10 N -0.336 5.336 11 C 0.352 3.648 12 O -0.436 6.436 13 C -0.155 4.155 14 C -0.102 4.102 15 C -0.139 4.139 16 C -0.086 4.086 17 C -0.239 4.239 18 S 0.138 5.862 19 C -0.684 4.684 20 H 0.084 0.916 21 C -0.185 4.185 22 N -0.542 5.542 23 Si 0.813 3.187 24 H -0.198 1.198 25 H -0.192 1.192 26 H -0.186 1.186 27 C -0.068 4.068 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.246 0.754 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.137 0.863 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.202 0.798 39 H 0.194 0.806 40 H 0.151 0.849 41 H 0.083 0.917 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 24.127 -3.427 -10.462 26.520 hybrid contribution -1.639 1.437 -1.644 2.730 sum 22.488 -1.990 -12.106 25.617 Atomic orbital electron populations 1.22816 0.96686 1.02936 1.00175 1.22017 0.92296 0.95198 0.86049 0.91872 1.86379 1.76807 1.58320 1.16329 1.21597 0.98159 0.93687 0.83198 0.92431 1.22562 0.89886 1.04263 0.97918 1.22931 0.99733 0.98910 0.94800 1.23249 0.82273 1.00089 0.98969 1.48299 1.05407 1.53832 1.26027 1.18117 0.82382 0.79946 0.84384 1.90855 1.41625 1.55420 1.55710 1.19880 0.95683 1.03074 0.96862 1.22463 0.98805 0.93289 0.95670 1.21593 0.97180 0.99794 0.95358 1.22083 0.92607 0.94667 0.99269 1.22473 1.00456 1.01491 0.99476 1.83460 1.05983 1.49270 1.47437 1.23059 0.98881 1.18085 1.28337 0.91580 1.25999 0.96905 0.99675 0.95912 1.70106 1.11529 1.40017 1.32549 0.85062 0.77913 0.77686 0.78066 1.19768 1.19219 1.18639 1.21572 0.95957 0.96201 0.93081 0.92421 0.92916 0.93750 0.75393 0.89306 0.89088 0.90547 0.86298 0.88000 0.88453 0.79839 0.80619 0.84852 0.91676 0.88179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.75 7.70 71.98 0.55 -4.19 16 2 C 0.10 2.20 3.18 30.60 0.10 2.30 16 3 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 4 O -0.57 -10.11 12.83 -148.98 -1.91 -12.02 16 5 C 0.14 2.85 2.84 45.34 0.13 2.98 16 6 H 0.06 1.48 8.00 -2.39 -0.02 1.46 16 7 C -0.11 -1.33 6.02 31.78 0.19 -1.14 16 8 C -0.13 -1.07 7.10 32.06 0.23 -0.84 16 9 C 0.07 0.93 4.97 86.93 0.43 1.36 16 10 N -0.60 -13.51 3.06 -790.97 -2.42 -15.93 16 11 C 0.56 18.11 7.15 86.79 0.62 18.73 16 12 O -0.56 -22.23 11.41 -3.89 -0.04 -22.27 16 13 C -0.15 -4.99 5.77 -20.11 -0.12 -5.10 16 14 C -0.08 -1.99 8.04 22.57 0.18 -1.81 16 15 C -0.12 -2.91 10.02 22.21 0.22 -2.69 16 16 C -0.07 -2.29 9.79 22.48 0.22 -2.07 16 17 C -0.13 -5.71 5.45 22.65 0.12 -5.58 16 18 S -0.10 -5.31 21.41 -56.49 -1.21 -6.52 16 19 C -0.54 -31.94 9.46 67.94 0.64 -31.30 16 20 H 0.07 3.90 7.79 -2.91 -0.02 3.88 16 21 C 0.02 1.18 5.49 84.84 0.47 1.65 16 22 N -0.91 -55.19 13.22 21.64 0.29 -54.90 16 23 Si 0.99 45.18 29.55 68.60 2.03 47.21 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 26 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 27 C -0.05 -1.99 9.34 22.70 0.21 -1.78 16 28 H 0.06 1.96 5.70 -2.98 -0.02 1.94 16 29 H 0.05 1.26 8.04 -2.38 -0.02 1.24 16 30 H 0.04 1.48 6.78 -2.38 -0.02 1.46 16 31 H 0.40 4.00 9.01 -74.06 -0.67 3.34 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.09 0.94 7.85 -2.39 -0.02 0.92 16 34 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.10 0.78 7.27 -2.39 -0.02 0.76 16 37 H 0.10 1.16 6.07 -2.39 -0.01 1.15 16 38 H 0.18 2.55 4.04 -2.91 -0.01 2.54 16 39 H 0.18 2.54 8.06 -2.91 -0.02 2.51 16 40 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 41 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 42 H 0.10 4.90 7.79 -2.91 -0.02 4.87 16 Total: -1.00 -79.78 350.47 1.31 -78.47 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.38 Total: 15.45 kcal Atomic # 6 Polarization: -33.68 SS G_CDS: 4.20 Total: -29.48 kcal Atomic # 7 Polarization: -68.69 SS G_CDS: -2.14 Total: -70.83 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -1.96 Total: -34.30 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 16 Polarization: -5.31 SS G_CDS: -1.21 Total: -6.52 kcal Total: -79.78 1.31 -78.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412353794.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.749 kcal (2) G-P(sol) polarization free energy of solvation -79.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds